CHN139
Library CH
(Link to library)
Clone ID CHN139
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16259-1
Original site URL
Representative seq. ID CHN139P
(Link to Original site)
Representative DNA sequence
>CHN139 (CHN139Q) /CSM/CH/CHN1-B/CHN139Q.Seq.d/
ATATATTTTTCATTTTATTAAAATTAATAATATATAATATATAATATATATATTACTTTT
ACTAATATATATTTTTTTAATTTAAAAAAATGTTAATAAATAAAATTTTATTTTTATTTT
TTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTTATACTTTATCTGTTAAAG
GAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAATTACTGAAATTTTGTTAA
CTTCCCAAAAAATATTACCAGATTACTCAATTACATTCACTTGTGAAATTCCATCTGCCA
ATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAATTAGCTGGAAAATTAACTC
TAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCTATGATATTAAAGCCAATC
AAATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCACCAACAATGGCTGGTACAG
CTGCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATGTTACAACTCTTCCTGGTG
TTTACAATTCAAAACCAGTXXXXXXXXXXGAAGTGGTATTAAAAATGCTGTTTCATTCAT
GGTTAAAGATGCTGAATCAAAATTATCACCACCATTGTTTTTAGATTATAGTCCACCAAC
CATTATGTCATCAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTATGGTAC
CAATTTTGAAAATACTTTGATTACAGTAAATGTTGGAAGTAAATCATGTGAAGATGTTTC
TGTAATAGATTCAACCAAACTTACTTGTTCAATTTCAAAATCAACAATAGATCCTTCATT
AACAAATAAGAAATTGGCCGTAAATGTTACTGTAAATGGTCAATCTGCTAATGGTGAAGT
ATTTGAATATGATAATGAAGCACTCAATACTGAAACTCCTAAACCAACATTAGCACCAAC
TATAAAACCAACTGAAAAACCAACTGAAAAACCAACTGAAAAACCAACAACATCTCCAAT
AGATAAACACATTGAAAATAGTTCTTCTAAAATTTCTAATTCATTAATTTTAATTTTCTC
ATTATTATTA
sequence update 2002.10.25
Translated Amino Acid sequence
iffillkliiyni*yiyyfy*yiff*FKKMLINKILFLFFILSLTIFNIVDAGYTLSVKG
KKLIYTGANVDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDFTKLAGKLTL
RGANLKTPNIVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDVTTLPGV
YNSKP---

---SGIKNAVSFMVKDAESKLSPPLFLDYSPPTIMSSTSVKQVEGGQVTIYGTNFENTLI
TVNVGSKSCEDVSVIDSTKLTCSISKSTIDPSLTNKKLAVNVTVNGQSANGEVFEYDNEA
LNTETPKPTLAPTIKPTEKPTEKPTEKPTTSPIDKHIENSSSKISNSLILIFSLLL


Translated Amino Acid sequence (All Frames)
Frame A:
iyfsfy*n**yiiyniyitftniyffnlkkc**ikfyfyflfyh*qylillmlvilyllk
eks*yilvpm*iskllkfc*lpkkyyqitqlhslvkfhlpialfvrvwiwtlqn*len*l
*geqi*kpqi**lpmilkpikfhyhyqlrlngnhqqwlvqlll*leisyylvkmlqlflv
ftiqnq---

---evvlkmlfhswlkmlnqnyhhhcf*iivhqplchqqv*nklkvvkllfmvpilkil*
lq*mlevnhvkmfl**iqpnllvqfqnqq*ilh*qirnwp*mll*mvnllmvkylnmimk
hsilkllnqh*hql*nqlknqlknqlknqqhlq*intlkivllkflih*f*fshyy

Frame B:
yifhfikinni*yiiyilllliyifli*knvnk*nfififysitnni*yc*cwlyfic*r
kkvniywcqcrfqny*nfvnfpknitrllnyihl*nsicq*pclyeygyglykiswkins
kgskfknpkysncl*y*sqsnsttitn*g*mgttnngwyscsydwrfliiw*rcynsswc
lqfkts---

---kwy*kccfihg*rc*ikiittivfrl*stnhyvinkckts*rwssyylwyqf*kyfd
yskcwk*im*rcfcnrfnqtylfnfkinnrsfink*eigrkcyckwsic*w*si*i***s
tqy*ns*tnistnyktn*ktn*ktn*ktnnisnr*th*k*ff*nf*finfnfliii

Frame C:
iffillkliiyni*yiyyfy*yiff*FKKMLINKILFLFFILSLTIFNIVDAGYTLSVKG
KKLIYTGANVDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDFTKLAGKLTL
RGANLKTPNIVIAYDIKANQIPLPLPTEVKWEPPTMAGTAALMTGDFLLFGEDVTTLPGV
YNSKP---

---SGIKNAVSFMVKDAESKLSPPLFLDYSPPTIMSSTSVKQVEGGQVTIYGTNFENTLI
TVNVGSKSCEDVSVIDSTKLTCSISKSTIDPSLTNKKLAVNVTVNGQSANGEVFEYDNEA
LNTETPKPTLAPTIKPTEKPTEKPTEKPTTSPIDKHIENSSSKISNSLILIFSLLL

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHB874 (SHB874Q) /CSM/SH/SHB8-D/SHB874Q.Seq.d/ 866 0.0
SHL869 (SHL869Q) /CSM/SH/SHL8-C/SHL869Q.Seq.d/ 866 0.0
SHL629 (SHL629Q) /CSM/SH/SHL6-B/SHL629Q.Seq.d/ 866 0.0
SHL431 (SHL431Q) /CSM/SH/SHL4-B/SHL431Q.Seq.d/ 866 0.0
SHL351 (SHL351Q) /CSM/SH/SHL3-C/SHL351Q.Seq.d/ 866 0.0
SHL288 (SHL288Q) /CSM/SH/SHL2-D/SHL288Q.Seq.d/ 866 0.0
SHL231 (SHL231Q) /CSM/SH/SHL2-B/SHL231Q.Seq.d/ 866 0.0
SHL114 (SHL114Q) /CSM/SH/SHL1-A/SHL114Q.Seq.d/ 866 0.0
SHK779 (SHK779Q) /CSM/SH/SHK7-D/SHK779Q.Seq.d/ 866 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY653733|AY653733.1 Acanthamoeba polyphaga mimivirus, complete genome. 32 4e-05 27
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence. 36 4e-05 14
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 36 7e-05 31
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 32 1e-04 25
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome. 36 1e-04 25
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 1e-04 21
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence. 38 2e-04 13
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 34 2e-04 15
AC004153|AC004153.7 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 36 3e-04 12
AE014016|AE014016.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 1 of 2 of the complete genome. 36 5e-04 16
dna update 2005. 6.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117076_23(AC117076|pid:none) Dictyostelium discoideum chromoso... 64 1e-08
AC115598_15(AC115598|pid:none) Dictyostelium discoideum chromoso... 62 3e-08
AC116100_1(AC116100|pid:none) Dictyostelium discoideum chromosom... 57 8e-07
AC116956_73(AC116956|pid:none) Dictyostelium discoideum chromoso... 52 5e-05
FJ374909_1(FJ374909|pid:none) Dictyostelium discoideum strain QS... 48 5e-04
FJ374971_1(FJ374971|pid:none) Dictyostelium discoideum strain AX... 48 7e-04
FJ374921_1(FJ374921|pid:none) Dictyostelium discoideum strain QS... 48 7e-04
FJ374902_1(FJ374902|pid:none) Dictyostelium discoideum strain QS... 47 9e-04
FJ374970_1(FJ374970|pid:none) Dictyostelium discoideum strain QS... 47 0.001
FJ374903_1(FJ374903|pid:none) Dictyostelium discoideum strain QS... 46 0.002
protein update 2009. 4. 9
PSORT

psg: 1.02 gvh: 0.61 alm: 0.23 top: 0.40 tms: 0.07 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: Golgi
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for CHN139 is end

5' end seq. ID CHN139F
5' end seq.
>CHN139F.Seq
ATATATTTTTCATTTTATTAAAATTAATAATATATAATATATAATATATATATTACTTTT
ACTAATATATATTTTTTTAATTTAAAAAAATGTTAATAAATAAAATTTTATTTTTATTTT
TTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTTATACTTTATCTGTTAAAG
GAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAATTACTGAAATTTTGTTAA
CTTCCCAAAAAATATTACCAGATTACTCAATTACATTCACTTGTGAAATTCCATCTGCCA
ATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAATTAGCTGGAAAATTAACTC
TAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCTATGATATTAAAGCCAATC
AAATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCACCAACAATGGCTGGTACAG
CTGCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATGTTACAACTCTTCCTGGTG
TTTACAATTCAAAACCAGTNNNNNNNNNN
Length of 5' end seq. 569
3' end seq. ID CHN139Z
3' end seq.
>CHN139Z.Seq
NNNNNNNNNNGAAGTGGTATTAAAAATGCTGTTTCATTCATGGTTAAAGATGCTGAATCA
AAATTATCACCACCATTGTTTTTAGATTATAGTCCACCAACCATTATGTCATCAACAAGT
GTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTATGGTACCAATTTTGAAAATACTTTG
ATTACAGTAAATGTTGGAAGTAAATCATGTGAAGATGTTTCTGTAATAGATTCAACCAAA
CTTACTTGTTCAATTTCAAAATCAACAATAGATCCTTCATTAACAAATAAGAAATTGGCC
GTAAATGTTACTGTAAATGGTCAATCTGCTAATGGTGAAGTATTTGAATATGATAATGAA
GCACTCAATACTGAAACTCCTAAACCAACATTAGCACCAACTATAAAACCAACTGAAAAA
CCAACTGAAAAACCAACTGAAAAACCAACAACATCTCCAATAGATAAACACATTGAAAAT
AGTTCTTCTAAAATTTCTAATTCATTAATTTTAATTTTCTCATTATTATTA
Length of 3' end seq. 531
Connected seq. ID CHN139P
Connected seq.
>CHN139P.Seq
ATATATTTTTCATTTTATTAAAATTAATAATATATAATATATAATATATATATTACTTTT
ACTAATATATATTTTTTTAATTTAAAAAAATGTTAATAAATAAAATTTTATTTTTATTTT
TTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTTATACTTTATCTGTTAAAG
GAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAATTACTGAAATTTTGTTAA
CTTCCCAAAAAATATTACCAGATTACTCAATTACATTCACTTGTGAAATTCCATCTGCCA
ATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAATTAGCTGGAAAATTAACTC
TAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCTATGATATTAAAGCCAATC
AAATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCACCAACAATGGCTGGTACAG
CTGCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATGTTACAACTCTTCCTGGTG
TTTACAATTCAAAACCAGT----------GAAGTGGTATTAAAAATGCTGTTTCATTCAT
GGTTAAAGATGCTGAATCAAAATTATCACCACCATTGTTTTTAGATTATAGTCCACCAAC
CATTATGTCATCAACAAGTGTAAAACAAGTTGAAGGTGGTCAAGTTACTATTTATGGTAC
CAATTTTGAAAATACTTTGATTACAGTAAATGTTGGAAGTAAATCATGTGAAGATGTTTC
TGTAATAGATTCAACCAAACTTACTTGTTCAATTTCAAAATCAACAATAGATCCTTCATT
AACAAATAAGAAATTGGCCGTAAATGTTACTGTAAATGGTCAATCTGCTAATGGTGAAGT
ATTTGAATATGATAATGAAGCACTCAATACTGAAACTCCTAAACCAACATTAGCACCAAC
TATAAAACCAACTGAAAAACCAACTGAAAAACCAACTGAAAAACCAACAACATCTCCAAT
AGATAAACACATTGAAAATAGTTCTTCTAAAATTTCTAATTCATTAATTTTAATTTTCTC
ATTATTATTA
Length of connected seq. 1080
Full length Seq ID -
Full length Seq. -
Length of full length seq. -