CHN129
Library CH
(Link to library)
Clone ID CHN129
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16495-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHN129 (CHN129Q) /CSM/CH/CHN1-B/CHN129Q.Seq.d/
XXXXXXXXXXTACCACTAGCAAATCACATCTCGCCCCATCCGCCCCACCAATGTCATGGA
ATCTCGCAATGCGTCATATCTTACCAATTCCTCAAAGTGAAGGTATTCCAACTCAAGAAC
TTTTAAGAAGAAAACTTAGAACTAGAAGAGGTTATCCTTCAAAAGGCTATGACGATGATA
AGATTACCTATATCCTTTACGTCTTTGAGTGGTTAGATATCTTTAGTGAAAAGAATAATG
TCGCTCAATGTGGTAACTATTTCGAAGCTTTCACAGAGTTATTGAAAACTAAACTCAATC
TCTTACCATCAGAAAGAGATTTAATCATTTTACATAATGTCGTTGGTATCGAATGGGATG
GTGGTAAACATGAAACTAAAACTTCAACACTCGTTTACTATGGTTCAAAAGATCAATCTG
CTGTTAGCACTGTAGTTGGTTTACCAGTTGCTATCGCAGCTGAATTATT
sequence update 2002. 9.10
Translated Amino Acid sequence
---TTSKSHLAPSAPPMSWNLAMRHILPIPQSEGIPTQELLRRKLRTRRGYPSKGYDDDK
ITYILYVFEWLDIFSEKNNVAQCGNYFEAFTELLKTKLNLLPSERDLIILHNVVGIEWDG
GKHETKTSTLVYYGSKDQSAVSTVVGLPVAIAAEL


Translated Amino Acid sequence (All Frames)
Frame A:
---TTSKSHLAPSAPPMSWNLAMRHILPIPQSEGIPTQELLRRKLRTRRGYPSKGYDDDK
ITYILYVFEWLDIFSEKNNVAQCGNYFEAFTELLKTKLNLLPSERDLIILHNVVGIEWDG
GKHETKTSTLVYYGSKDQSAVSTVVGLPVAIAAEL


Frame B:
---planhisphpphqchgisqcvisyqflkvkvfqlknf*eenleleevilqkamtmir
lpisftslsg*islvkrimslnvvtisklsqsy*klnsisyhqkei*sfyimslvsngmv
vnmklklqhsftmvqkinlllal*lvyqllsqlny


Frame C:
---h*qitsrpirptnvmesrnasyltnssk*rysnsrtfkkkt*n*krlsfkrl*r**d
ylyplrl*vvryl**ke*crsmw*lfrsfhrvien*tqsltirkrfnhft*crwyrmgww
*t*n*nfntrllwfkrsicc*hcswftscyrs*ii


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHI192 (VHI192Q) /CSM/VH/VHI1-D/VHI192Q.Seq.d/ 910 0.0
VHE481 (VHE481Q) /CSM/VH/VHE4-D/VHE481Q.Seq.d/ 910 0.0
VHB321 (VHB321Q) /CSM/VH/VHB3-A/VHB321Q.Seq.d/ 910 0.0
SHK518 (SHK518Q) /CSM/SH/SHK5-A/SHK518Q.Seq.d/ 910 0.0
SHD787 (SHD787Q) /CSM/SH/SHD7-D/SHD787Q.Seq.d/ 910 0.0
CHN129 (CHN129Q) /CSM/CH/CHN1-B/CHN129Q.Seq.d/ 910 0.0
CHK492 (CHK492Q) /CSM/CH/CHK4-D/CHK492Q.Seq.d/ 910 0.0
AHL713 (AHL713Q) /CSM/AH/AHL7-A/AHL713Q.Seq.d/ 910 0.0
AHL574 (AHL574Q) /CSM/AH/AHL5-D/AHL574Q.Seq.d/ 910 0.0
AHA214 (AHA214Q) /CSM/AH/AHA2-A/AHA214Q.Seq.d/ 910 0.0

own update 2002.10. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116905|AC116905.7 Homo sapiens chromosome 15 clone CTD-2062A7 map 15, 3 ordered pieces. 36 0.069 7
AC136774|AC136774.4 Homo sapiens chromosome 15 clone RP11-354H8 map 15, WORKING DRAFT SEQUENCE, 2 ordered pieces. 36 0.55 7
AC012414|AC012414.12 Homo sapiens chromosome 15, clone RP11-403B2, complete sequence. 36 0.57 7
AC060814|AC060814.11 Homo sapiens chromosome 15, clone RP11-275E15, complete sequence. 36 0.74 7
AC023191|AC023191.5 Homo sapiens chromosome 15 clone RP11-388D24 map 15, WORKING DRAFT SEQUENCE, 6 unordered pieces. 36 1.00 7
AC159002|AC159002.1 Mus musculus chromosome 14 clone RP23-203D7, WORKING DRAFT SEQUENCE, 8 unordered pieces. 44 2.4 1
AZ941527|AZ941527.1 2M0201L13F Mouse 10kb plasmid UUGC2M library Mus musculus genomic clone UUGC2M0201L13 F, DNA sequence. 44 2.4 1
BX294168|BX294168.12 Mouse DNA sequence from clone RP23-29M4 on chromosome X. 44 2.4 1
AC002315|AC002315.1 Mouse BAC-146N21 Chromosome X contains iduronate-2-sulfatase gene; complete sequence. 44 2.4 1
AW048636|AW048636.1 UI-M-BH1-amd-c-12-0-UI.s1 NIH_BMAP_M_S2 Mus musculus cDNA clone UI-M-BH1-amd-c-12-0-UI 3', mRNA sequence. 44 2.4 1
dna update 2005. 6.24
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR382130_918(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 76 3e-13
CR382138_765(CR382138|pid:none) Debaryomyces hansenii strain CBS... 70 2e-11
CR382123_810(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 68 8e-11
FM992690_618(FM992690|pid:none) Candida dubliniensis CD36 chromo... 68 1e-10
(P38999) RecName: Full=Saccharopine dehydrogenase [NADP+, L-glut... 67 2e-10
BC073642_1(BC073642|pid:none) Xenopus laevis MGC82978 protein, m... 66 4e-10
AM920437_580(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 64 2e-09
(A2VCW9) RecName: Full=Alpha-aminoadipic semialdehyde synthase, ... 63 4e-09
AJ224761_1(AJ224761|pid:none) Mus musculus mRNA encoding lysine-... 61 1e-08
AM989986_8(AM989986|pid:none) Zygosaccharomyces rouxii strain CB... 61 1e-08
protein update 2009. 5.20
PSORT

psg: 0.85 gvh: 0.47 alm: 0.34 top: 0.40 tms: 0.00 mit: 0.38 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for CHN129 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHN129Z
3' end seq.
>CHN129Z.Seq
NNNNNNNNNNTACCACTAGCAAATCACATCTCGCCCCATCCGCCCCACCAATGTCATGGA
ATCTCGCAATGCGTCATATCTTACCAATTCCTCAAAGTGAAGGTATTCCAACTCAAGAAC
TTTTAAGAAGAAAACTTAGAACTAGAAGAGGTTATCCTTCAAAAGGCTATGACGATGATA
AGATTACCTATATCCTTTACGTCTTTGAGTGGTTAGATATCTTTAGTGAAAAGAATAATG
TCGCTCAATGTGGTAACTATTTCGAAGCTTTCACAGAGTTATTGAAAACTAAACTCAATC
TCTTACCATCAGAAAGAGATTTAATCATTTTACATAATGTCGTTGGTATCGAATGGGATG
GTGGTAAACATGAAACTAAAACTTCAACACTCGTTTACTATGGTTCAAAAGATCAATCTG
CTGTTAGCACTGTAGTTGGTTTACCAGTTGCTATCGCAGCTGAATTATT
Length of 3' end seq. 469
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -