>CHM895 (CHM895Q) /CSM/CH/CHM8-D/CHM895Q.Seq.d/
ATTTTATTAAAAATATAATTATTTCAAATAGTATATATAAAAAACAAAGATGGCAGATGA
TGCAATTAGAATAGCAATTGTAAATGCAGATAGATGCAAACCAAAGAAATGTAGTCAAGA
ATGTAAAAAGTATTGCCCAGTCGTAAAGATGGGTAAACTTTGTATTGAAGTTAAACCAAC
ATCAAAGATGTCATACATTTCAGAAGAACTTTGTAATGGTTGTGGTATTTGTGTAAAGAA
ATGTCCATTCGAAGCAATTCAAATCATTAATTTACCAAAGAATTTAACCAAAGAAACCAC
ACATCGTTATGGTCCAAACAGTTTCAAACTTCATAGATTACCAACACCACXXXXXXXXXX

fy*kynyfk*yi*KTKMADDAIRIAIVNADRCKPKKCSQECKKYCPVVKMGKLCIEVKPT
SKMSYISEELCNGCGICVKKCPFEAIQIINLPKNLTKETTHRYGPNSFKLHRLPTP---

Frame A:
illki*lfqivyiknkdgr*cn*nsnckcr*mqtkem*srm*kvlpsrkdg*tly*s*tn
ikdvihfrrtl*wlwylckemsirsnsnh*ftkefnqrnhtslwskqfqts*itnt---


Frame B:
fy*kynyfk*yi*KTKMADDAIRIAIVNADRCKPKKCSQECKKYCPVVKMGKLCIEVKPT
SKMSYISEELCNGCGICVKKCPFEAIQIINLPKNLTKETTHRYGPNSFKLHRLPTP---


Frame C:
fikniiisnsiykkqrwqmmqle*ql*mqidanqrnvvknvksiaqs*rwvnfvlklnqh
qrchtfqknfvmvvvfv*rnvhskqfksliyqri*pkkphivmvqtvsnfidyqh---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN604 (VHN604Q) /CSM/VH/VHN6-A/VHN604Q.Seq.d/                        694   0.0
VHN381 (VHN381Q) /CSM/VH/VHN3-D/VHN381Q.Seq.d/                        694   0.0
VHN147 (VHN147Q) /CSM/VH/VHN1-B/VHN147Q.Seq.d/                        694   0.0
VHL677 (VHL677Q) /CSM/VH/VHL6-D/VHL677Q.Seq.d/                        694   0.0
VHK618 (VHK618Q) /CSM/VH/VHK6-A/VHK618Q.Seq.d/                        694   0.0
VHI606 (VHI606Q) /CSM/VH/VHI6-A/VHI606Q.Seq.d/                        694   0.0
VHI356 (VHI356Q) /CSM/VH/VHI3-C/VHI356Q.Seq.d/                        694   0.0
VHE148 (VHE148Q) /CSM/VH/VHE1-B/VHE148Q.Seq.d/                        694   0.0
VHC726 (VHC726Q) /CSM/VH/VHC7-B/VHC726Q.Seq.d/                        694   0.0
VHB384 (VHB384Q) /CSM/VH/VHB3-D/VHB384Q.Seq.d/                        694   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY077634|AY077634.1 Dictyostelium discoideum RNaseL inhibitor-like protein ABCE.1 gene, complete cds.   694   0.0    1
BJ203253|BJ203253.1 Physcomitrella patens subsp. patens cDNA clone:pphn48n12, 5' end, single read.    64   2e-20  4
CN904597|CN904597.1 010901ABDA002068HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus x domestica cDNA clone ABDA002068, mRNA sequence.   103   2e-18  1
CN905746|CN905746.1 010929ABDA004496HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus x domestica cDNA clone ABDA004496, mRNA sequence.   103   2e-18  1
CN883016|CN883016.1 010813AASB003555HT (AASB) Royal Gala 10 DAFB fruit Malus x domestica cDNA clone AASB003555, mRNA sequence.   103   2e-18  1
CN904533|CN904533.1 010831ABDA001900HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus x domestica cDNA clone ABDA001900, mRNA sequence.   103   2e-18  1
CN904283|CN904283.1 010831ABDA001389HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus x domestica cDNA clone ABDA001389, mRNA sequence.   103   2e-18  1
BI178501|BI178501.1 EST519446 cSTE Solanum tuberosum cDNA clone cSTE14E2 5' sequence, mRNA sequence.    80   4e-18  2
BJ163878|BJ163878.1 Physcomitrella patens subsp. patens cDNA clone:pph31f22, 5' end, single read.    60   2e-17  4
AZ539223|AZ539223.1 ENTDX30TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    82   3e-17  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY077634_1(AY077634|pid:none) Dictyostelium discoideum RNaseL in...   215   3e-55
AM467716_1(AM467716|pid:none) Vitis vinifera contig VV78X234292....   177   1e-43
CR954213_290(CR954213|pid:none) Ostreococcus tauri strain OTTH05...   172   3e-42
AP008217_1071(AP008217|pid:none) Oryza sativa (japonica cultivar...   172   4e-42
AC157490_5(AC157490|pid:none) Medicago truncatula clone mth2-123...   171   9e-42
CP000593_269(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...   169   2e-41
AK226939_1(AK226939|pid:none) Arabidopsis thaliana mRNA for RNas...   169   3e-41
CR382139_534(CR382139|pid:none) Debaryomyces hansenii strain CBS...   168   6e-41
CR380953_343(CR380953|pid:none) Candida glabrata strain CBS138 c...   166   2e-40
(Q03195) RecName: Full=Translation initiation factor RLI1; AltNa...   164   7e-40

 psg: 0.61  gvh: 0.30  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHM895 is nuc

>CHM895F.Seq
ATTTTATTAAAAATATAATTATTTCAAATAGTATATATAAAAAACAAAGATGGCAGATGA
TGCAATTAGAATAGCAATTGTAAATGCAGATAGATGCAAACCAAAGAAATGTAGTCAAGA
ATGTAAAAAGTATTGCCCAGTCGTAAAGATGGGTAAACTTTGTATTGAAGTTAAACCAAC
ATCAAAGATGTCATACATTTCAGAAGAACTTTGTAATGGTTGTGGTATTTGTGTAAAGAA
ATGTCCATTCGAAGCAATTCAAATCATTAATTTACCAAAGAATTTAACCAAAGAAACCAC
ACATCGTTATGGTCCAAACAGTTTCAAACTTCATAGATTACCAACACCACNNNNNNNNNN