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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CHM837
Library CH
(Link to library)
Clone ID CHM837
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16527-1
Original site URL
Representative seq. ID CHM837P
(Link to Original site)
Representative DNA sequence 
>CHM837 (CHM837Q) /CSM/CH/CHM8-B/CHM837Q.Seq.d/
TAACTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCT
AAGTATAAATTCTTGTACGATGAAACTGCAGACGGCTCATTACAACAGTGATAAACTAAT
AGACTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATACATACAAGCG
ATGGGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTT
TGGGTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCA
CTGCCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGG
GAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGC
AGCAGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATAC
CTATCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATT
GGAGGGCAAGTCTGGTGCCAGCAGCCCGCGGTAATTCCAGCTCCAATAGCATATACTAXX
XXXXXXXXCTCGGGAAAACTTACCAAGTTAAGATATAGTAAGGATTGACAGACTAAAAGA
TCTTTCATGATTCTATAAGTGGTGGTGCATGGTCGTTCTTAGTTGGTGGAGCGATTTGTC
TGGTCAATTCCGATAACGGACGAGACCTCGACCTGCTAACTAGTAGTATTTATTAGTCGA
TATAGACGATAGCTTTTNTGGGGTTTGGAATGATTTCGGTCATCTCCTGCTTCAAGGAGT
GTGTAGTCTGACTCGATAGGTACNNNNTNCAACTTC
sequence update 2002.10.25
Translated Amino Acid sequence 
*lvdpasshmlvskikpcmskykflydetadgslqq**tnrlsgftfwitavnrg*yiqa
mgdwqrklsdy*hstnafgfwvipnniadrgfifdkstvslpyqlsmvrywptmvvtgng
elgfdsgega*emattstegsrranysipirgssdnkyqylsflegn*NEHKLKLLINTI
GGQVWCQQPAVIPAPIAYT---

---SGKLTKLRYSKD*qtkrsfmil*vvvhgrs*lverfvwsipitdetstc*lvvfisr
yrr*lxwgle*frsspasrsv*sdsigtxxnf
Translated Amino Acid sequence (All Frames) 
Frame A:
*lvdpasshmlvskikpcmskykflydetadgslqq**tnrlsgftfwitavnrg*yiqa
mgdwqrklsdy*hstnafgfwvipnniadrgfifdkstvslpyqlsmvrywptmvvtgng
elgfdsgega*emattstegsrranysipirgssdnkyqylsflegn*NEHKLKLLINTI
GGQVWCQQPAVIPAPIAYT---

---lgktyqvki**gltd*kifhdsisggawsflvggaiclvnsdngrdldlltssiy*s
i*tiafxgfgmisviscfkecvv*ldryxxql

Frame B:
nwlilpvviclsqrlshaclsinsctmklqtahynsdklidfrvlpfg*pq*igantykr
wvtgngssaiisilpmpsgfg*yriilqiedlsstsllchcpinfrwygiglpwl*rvtg
n*gsiperepekwlpllrkaagaqitqsqygevvtinintypfwraiemntn*ns*ltql
egksgasspr*fqlq*hil---

---SGKLTKLRYSKD*qtkrsfmil*vvvhgrs*lverfvwsipitdetstc*lvvfisr
yrr*lxwgle*frsspasrsv*sdsigtxxnf

Frame C:
tg*scq*syaclkd*amhv*v*ilvr*ncrrlittvin**tfgfylldnrsksglihtsd
g*lateaqrllafyqclrvlgdte*ycrsriylrqvycvtalstfdgtvlayhgcng*rg
irvrfrrgslrngyhfygrqqarkllnpntgk**q*isipilfggqlk*tqiktln*hnw
raslvpaargnsssnsiy---

---renlps*divridrlkdls*fykwwcmvvlswwsdlsgqfr*rtrprpan**yllvd
iddsfxgvwndfghlllqgvcsltr*vxxxt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM837 (CHM837Q) /CSM/CH/CHM8-B/CHM837Q.Seq.d/                       1645   0.0
CHO248 (CHO248Q) /CSM/CH/CHO2-B/CHO248Q.Seq.d/                       1185   0.0
CHG692 (CHG692Q) /CSM/CH/CHG6-D/CHG692Q.Seq.d/                       1185   0.0
SFK216 (SFK216Q) /CSM/SF/SFK2-A/SFK216Q.Seq.d/                       1179   0.0
CHI773 (CHI773Q) /CSM/CH/CHI7-D/CHI773Q.Seq.d/                       1178   0.0
VHG238 (VHG238Q) /CSM/VH/VHG2-B/VHG238Q.Seq.d/                       1164   0.0
VHE381 (VHE381Q) /CSM/VH/VHE3-D/VHE381Q.Seq.d/                       1164   0.0
VFG294 (VFG294Q) /CSM/VF/VFG2-D/VFG294Q.Seq.d/                       1164   0.0
SFK164 (SFK164Q) /CSM/SF/SFK1-C/SFK164Q.Seq.d/                       1164   0.0
AHH496 (AHH496Q) /CSM/AH/AHH4-D/AHH496Q.Seq.d/                       1148   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.  1122   0.0    2
K02641|K02641.1 Slime mold (D.discoideum) 17S small subunit ribosomal RNA gene, complete coding sequence.  1110   0.0    2
X00134|X00134.1 Dictyostelium discoideum 17S rRNA sequence.      1108   0.0    2
AY040329|AY040329.1 Dictyostelium dimigraformum 18S ribosomal RNA gene, partial sequence.  1061   0.0    2
AY040330|AY040330.1 Dictyostelium firmibasis 18S ribosomal RNA gene, partial sequence.  1045   0.0    2
AY040331|AY040331.1 Dictyostelium giganteum 18S ribosomal RNA gene, partial sequence.   634   0.0    6
AY040335|AY040335.1 Dictyostelium purpureum 18S ribosomal RNA gene, partial sequence.   611   0.0    6
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.      575   0.0    3
AY040336|AY040336.1 Dictyostelium sphaerocephalum 18S ribosomal RNA gene, partial sequence.   458   0.0    7
AY040340|AY040340.1 Polysphondylium violaceum 18S ribosomal RNA gene, partial sequence.   454   0.0    6
dna update 2005. 6.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU979522_1(EU979522|pid:none) Ornithoctonus huwena clone HWEco7 ...    59   3e-07
AF421549_1(AF421549|pid:none) Gallus gallus CDH1-D mRNA, partial...    52   2e-05
AM462492_6(AM462492|pid:none) Vitis vinifera contig VV78X177628....    41   0.056
protein update 2008.11. 4
PSORT 

 psg: 0.89  gvh: 0.53  alm: 0.49  top: 0.57  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for CHM837 is cyt
5' end seq. ID CHM837F
5' end seq. 
>CHM837F.Seq
TAACTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCT
AAGTATAAATTCTTGTACGATGAAACTGCAGACGGCTCATTACAACAGTGATAAACTAAT
AGACTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATACATACAAGCG
ATGGGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTT
TGGGTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCA
CTGCCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGG
GAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGC
AGCAGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATAC
CTATCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATT
GGAGGGCAAGTCTGGTGCCAGCAGCCCGCGGTAATTCCAGCTCCAATAGCATATACTANN
NNNNNNNN
Length of 5' end seq. 608
3' end seq. ID CHM837Z
3' end seq. 
>CHM837Z.Seq
NNNNNNNNNNCTCGGGAAAACTTACCAAGTTAAGATATAGTAAGGATTGACAGACTAAAA
GATCTTTCATGATTCTATAAGTGGTGGTGCATGGTCGTTCTTAGTTGGTGGAGCGATTTG
TCTGGTCAATTCCGATAACGGACGAGACCTCGACCTGCTAACTAGTAGTATTTATTAGTC
GATATAGACGATAGCTTTTNTGGGGTTTGGAATGATTTCGGTCATCTCCTGCTTCAAGGA
GTGTGTAGTCTGACTCGATAGGTACNNNNTNCAACTTC
Length of 3' end seq. 278
Connected seq. ID CHM837P
Connected seq. 
>CHM837P.Seq
TAACTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCT
AAGTATAAATTCTTGTACGATGAAACTGCAGACGGCTCATTACAACAGTGATAAACTAAT
AGACTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATACATACAAGCG
ATGGGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTT
TGGGTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCA
CTGCCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGG
GAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGC
AGCAGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATAC
CTATCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATT
GGAGGGCAAGTCTGGTGCCAGCAGCCCGCGGTAATTCCAGCTCCAATAGCATATACTA--
--------CTCGGGAAAACTTACCAAGTTAAGATATAGTAAGGATTGACAGACTAAAAGA
TCTTTCATGATTCTATAAGTGGTGGTGCATGGTCGTTCTTAGTTGGTGGAGCGATTTGTC
TGGTCAATTCCGATAACGGACGAGACCTCGACCTGCTAACTAGTAGTATTTATTAGTCGA
TATAGACGATAGCTTTTNTGGGGTTTGGAATGATTTCGGTCATCTCCTGCTTCAAGGAGT
GTGTAGTCTGACTCGATAGGTACNNNNTNCAACTTC
Length of connected seq. 866
Full length Seq ID -
Full length Seq. -
Length of full length seq. -