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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM824
Library CH
(Link to library)
Clone ID CHM824
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11858-1
Original site URL
Representative seq. ID CHM824P
(Link to Original site)
Representative DNA sequence 
>CHM824 (CHM824Q) /CSM/CH/CHM8-A/CHM824Q.Seq.d/
GATTTATTTTATTTGGGAATTCCTCCTATATATATTTAAGATACACACACACAAATTTTA
TACAAATAATTATTTCTCTTTATTAATTTTTAATATTATTATTTTTCTCATATTATAATT
TTAGATATCAACAATAAAATATGTCTACCACTGTTAATAATAATGAAGCCTCTAGTAGTA
GTACCTCTGCCTCTAATAGCGCTGAATCCTTTGATTTAAGAATGAAATCAATGGAGGATC
AAATCAACAACATTTCCTTAGCCTTTACAAGATTCATGAAAGAACCTATGTTCTCATCTA
ATACCAATTCACGTAGCCAACCTTCTCATGATAACTCTGACACCGAGAATGAACAAAGTG
AAGATGAATCAAGTAACAATGTCGATGTTCCAACCGATTATCAATTATCCGATACTTTAC
TTGGTCAGTACAAACATATGGTAAACAATCAAGGTTTACTCGTCGAAGAAGAATGTATCC
TCAAGAAAGATGAGATATCCGAATTGAATAAAGTATTCAACTTTCTATCTAACTTCCAAG
TGAATGTTGCTCCAXXXXXXXXXXCGTCCAGTTCTAGATTTAAAAAGGTTAAACACTTAC
ATCAACAACCAATCATTCAAGATGGAAGGAATCAAGAATCTACCATCAATGGTCAAACAA
GGTTATTACATGGTAAAACTCGATATCAAGAAAGCTTACCTACACGTGTTAGTAGATCCA
CAATACAGAGACTTATTACGCTTCGTGTGGAAAGGTTCGCATTACCGTTGGAAAACAATG
CCGTTCGGGTTATCGACACACAGCGATGAAAATTACACCTTTAAAGCAACTTTAAATTAA
ATTAAAAGTGGATTTAAAGTCCTATAAAAAAGTCACTTAAAAATTAATTTAAAAGCAATT
TTTTAAATGACCTTTAAAATCACCTTTAAAATCACCTTTAAAATTACCTTTAAAATCACC
TTTAAAATTAACTTTAAAATGACCTTGAAAATTACCTTGAAAATTACCTTTAAAATGACC
TTTAAAATTACCTTTATAATGCTCTTTAAAATTAAGTTTAAAATTACCTTTATAAAGCCC
TTTAAAATTAACTTTATAATGCTCTTTAAAATTACTTAAAAATATGATTAAAAATTATAT
TAATAATTACATTTAAAAGCACCTTATTAATAATGCTATAAAAATAAATAAAAAAAATTT
AAAAATTATTTTAAAACTATAGTANAAATAAAATTTTATGNAAAAATAAAATACACAG
sequence update 2002.10.25
Translated Amino Acid sequence 
filfgnssyiylrythtnfiqiiisly*flillffsyynfryqq*NMSTTVNNNEASSSS
TSASNSAESFDLRMKSMEDQINNISLAFTRFMKEPMFSSNTNSRSQPSHDNSDTENEQSE
DESSNNVDVPTDYQLSDTLLGQYKHMVNNQGLLVEEECILKKDEISELNKVFNFLSNFQV
NVAP---

---RPVLDLKRLNTYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDL
LRFVWKGSHYRWKTMPFGLSTHSDENYTFKATLN*iksgfkvl*kshlkinlkaif*mtf
kitfkitfkitfkitfkinfkmtlkitlkitfkmtfkitfimlfkikfkitfikpfkinf
imlfkit*kyd*kly**lhlkapy**cyknk*kkfknyfktivxikfyxkikyt
Translated Amino Acid sequence (All Frames) 
Frame A:
dlfylgippiyi*dthtqilyk*lflfinf*yyyfshiiildinnkiclplliimkplvv
vplplialnpli*e*nqwriksttfp*plqds*knlcshlipihvanllmitltprmnkv
kmnqvtmsmfqpiinypilylvstniw*tikvysskknvssrkmrypn*ikystfyltsk
*mll---

---RPVLDLKRLNTYINNQSFKMEGIKNLPSMVKQGYYMVKLDIKKAYLHVLVDPQYRDL
LRFVWKGSHYRWKTMPFGLSTHSDENYTFKATLN*iksgfkvl*kshlkinlkaif*mtf
kitfkitfkitfkitfkinfkmtlkitlkitfkmtfkitfimlfkikfkitfikpfkinf
imlfkit*kyd*kly**lhlkapy**cyknk*kkfknyfktivxikfyxkikyt

Frame B:
iyfiwefllyifkihthkfytnnyfsllifniiiflil*f*istikyvyhc****sl***
ylcl**r*il*fkneinggsnqqhflslykihertyvli*yqft*ptfs**l*hre*tk*
r*ik*qcrcsnrlsiiryftwsvqtygkqsrftrrrrmypqer*dirie*siqlsi*lps
eccs---

---vqf*i*kg*tltsttnhsrwkesriyhqwsnkvitw*nsisrkltytc**ihntety
yascgkvritvgkqcrsgyrhtamkitplkql*iklkvdlksykkvt*kli*kqffk*pl
ksplksplklplksplkltlk*p*klp*klplk*plklpl*cslklslklpl*splkltl
*cslkllknmiknyinnyi*khlinnaikinkknlkiilkl*xk*nfmxk*ntq

Frame C:
filfgnssyiylrythtnfiqiiisly*flillffsyynfryqq*NMSTTVNNNEASSSS
TSASNSAESFDLRMKSMEDQINNISLAFTRFMKEPMFSSNTNSRSQPSHDNSDTENEQSE
DESSNNVDVPTDYQLSDTLLGQYKHMVNNQGLLVEEECILKKDEISELNKVFNFLSNFQV
NVAP---

---sssrfkkvkhlhqqpiiqdgrnqestingqtrllhgktryqeslptrvsrstiqrli
tlrverfalplennavrvidtqr*klhl*snfkln*kwi*spikkslkn*fksnflndl*
nhl*nhl*nyl*nhl*n*l*ndlenylenyl*ndl*nylynal*n*v*nylykal*n*ly
nal*nylki*lkiiliitfkstlliml*k*ikki*klf*nysxnkilxknkih
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM824 (CHM824Q) /CSM/CH/CHM8-A/CHM824Q.Seq.d/                       1346   0.0
SLB649 (SLB649Q) /CSM/SL/SLB6-C/SLB649Q.Seq.d/                        745   0.0
SLG296 (SLG296Q) /CSM/SL/SLG2-D/SLG296Q.Seq.d/                        513   e-144
AHO417 (AHO417Q) /CSM/AH/AHO4-A/AHO417Q.Seq.d/                        416   e-115
CHO119 (CHO119Q) /CSM/CH/CHO1-A/CHO119Q.Seq.d/                         70   9e-11
AHD478 (AHD478Q) /CSM/AH/AHD4-D/AHD478Q.Seq.d/                         70   9e-11
VHB568 (VHB568Q) /CSM/VH/VHB5-C/VHB568Q.Seq.d/                         68   4e-10
VHO702 (VHO702Q) /CSM/VH/VHO7-A/VHO702Q.Seq.d/                         38   0.32
VHB508 (VHB508Q) /CSM/VH/VHB5-A/VHB508Q.Seq.d/                         38   0.32
VFO874 (VFO874Q) /CSM/VF/VFO8-D/VFO874Q.Seq.d/                         38   0.32
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   791   0.0    6
M11340|M11340.1 Slime mold (D.discoideum) transposon DIRS-1, clone SB68.   775   0.0    4
M11339|M11339.1 Slime mold (D.discoideum) transposon DIRS-1, complete, clone SB41.   751   0.0    4
AF298624|AF298624.2 Dictyostelium discoideum chromosome 2 repeat region.   759   0.0    15
AF298201|AF298201.1 Dictyostelium discoideum putative transposon DDT-A, complete sequence.   198   3e-86  8
AF017047|AF017047.1 Dictyostelium discoideum LTR-retrotransposon Skipper, partial genomic sequence, 3' end.   266   9e-67  3
AF017044|AF017044.1 Dictyostelium discoideum LTR-retrotransposon Skipper, partial genomic sequence, 3' end.   266   9e-67  3
AF017046|AF017046.1 Dictyostelium discoideum LTR-retrotransposon Skipper, partial genomic sequence, 3' end.   222   1e-53  1
K03065|K03065.1 Slime mold (D.discoideum) mRNA complementary to the left inverted repeat of DIRS-1, clone pCCA5.    82   2e-26  2
K03063|K03063.1 Slime mold (D.discoideum) mRNA complementary to left inverted terminal repeat of transposon DIRS-1, clone pCC31.    82   2e-26  2
dna update 2005. 6.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A24785(A24785)hypothetical protein 335 - slime mold (Dictyosteli...   184   7e-45
M11339_1(M11339|pid:none) Slime mold (D.discoideum) transposon D...   182   2e-44
M11339_3(M11339|pid:none) Slime mold (D.discoideum) transposon D...   164   6e-39
C24785(C24785)hypothetical protein 668 - slime mold (Dictyosteli...   164   6e-39
B24785(B24785)hypothetical protein 1028 - slime mold (Dictyostel...   138   4e-31
EU528617_1(EU528617|pid:none) Daphnia pulex clone D11 retrotrans...    74   8e-12
EU528616_1(EU528616|pid:none) Daphnia pulex clone D5 retrotransp...    65   4e-09
EF710659_7(EF710659|pid:none) Glyptapanteles indiensis clone BAC...    65   5e-09
AF541963_5(AF541963|pid:none) Glycine max cv Williams 82 BAC clo...    51   9e-05
DQ822074_4(DQ822074|pid:none) Dioscorea bacilliform virus clone ...    47   0.001
protein update 2009. 4. 9
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHM824 is nuc
5' end seq. ID CHM824F
5' end seq. 
>CHM824F.Seq
GATTTATTTTATTTGGGAATTCCTCCTATATATATTTAAGATACACACACACAAATTTTA
TACAAATAATTATTTCTCTTTATTAATTTTTAATATTATTATTTTTCTCATATTATAATT
TTAGATATCAACAATAAAATATGTCTACCACTGTTAATAATAATGAAGCCTCTAGTAGTA
GTACCTCTGCCTCTAATAGCGCTGAATCCTTTGATTTAAGAATGAAATCAATGGAGGATC
AAATCAACAACATTTCCTTAGCCTTTACAAGATTCATGAAAGAACCTATGTTCTCATCTA
ATACCAATTCACGTAGCCAACCTTCTCATGATAACTCTGACACCGAGAATGAACAAAGTG
AAGATGAATCAAGTAACAATGTCGATGTTCCAACCGATTATCAATTATCCGATACTTTAC
TTGGTCAGTACAAACATATGGTAAACAATCAAGGTTTACTCGTCGAAGAAGAATGTATCC
TCAAGAAAGATGAGATATCCGAATTGAATAAAGTATTCAACTTTCTATCTAACTTCCAAG
TGAATGTTGCTCCANNNNNNNNNN
Length of 5' end seq. 564
3' end seq. ID CHM824Z
3' end seq. 
>CHM824Z.Seq
NNNNNNNNNNCGTCCAGTTCTAGATTTAAAAAGGTTAAACACTTACATCAACAACCAATC
ATTCAAGATGGAAGGAATCAAGAATCTACCATCAATGGTCAAACAAGGTTATTACATGGT
AAAACTCGATATCAAGAAAGCTTACCTACACGTGTTAGTAGATCCACAATACAGAGACTT
ATTACGCTTCGTGTGGAAAGGTTCGCATTACCGTTGGAAAACAATGCCGTTCGGGTTATC
GACACACAGCGATGAAAATTACACCTTTAAAGCAACTTTAAATTAAATTAAAAGTGGATT
TAAAGTCCTATAAAAAAGTCACTTAAAAATTAATTTAAAAGCAATTTTTTAAATGACCTT
TAAAATCACCTTTAAAATCACCTTTAAAATTACCTTTAAAATCACCTTTAAAATTAACTT
TAAAATGACCTTGAAAATTACCTTGAAAATTACCTTTAAAATGACCTTTAAAATTACCTT
TATAATGCTCTTTAAAATTAAGTTTAAAATTACCTTTATAAAGCCCTTTAAAATTAACTT
TATAATGCTCTTTAAAATTACTTAAAAATATGATTAAAAATTATATTAATAATTACATTT
AAAAGCACCTTATTAATAATGCTATAAAAATAAATAAAAAAAATTTAAAAATTATTTTAA
AACTATAGTANAAATAAAATTTTATGNAAAAATAAAATACACAG
Length of 3' end seq. 704
Connected seq. ID CHM824P
Connected seq. 
>CHM824P.Seq
GATTTATTTTATTTGGGAATTCCTCCTATATATATTTAAGATACACACACACAAATTTTA
TACAAATAATTATTTCTCTTTATTAATTTTTAATATTATTATTTTTCTCATATTATAATT
TTAGATATCAACAATAAAATATGTCTACCACTGTTAATAATAATGAAGCCTCTAGTAGTA
GTACCTCTGCCTCTAATAGCGCTGAATCCTTTGATTTAAGAATGAAATCAATGGAGGATC
AAATCAACAACATTTCCTTAGCCTTTACAAGATTCATGAAAGAACCTATGTTCTCATCTA
ATACCAATTCACGTAGCCAACCTTCTCATGATAACTCTGACACCGAGAATGAACAAAGTG
AAGATGAATCAAGTAACAATGTCGATGTTCCAACCGATTATCAATTATCCGATACTTTAC
TTGGTCAGTACAAACATATGGTAAACAATCAAGGTTTACTCGTCGAAGAAGAATGTATCC
TCAAGAAAGATGAGATATCCGAATTGAATAAAGTATTCAACTTTCTATCTAACTTCCAAG
TGAATGTTGCTCCA----------CGTCCAGTTCTAGATTTAAAAAGGTTAAACACTTAC
ATCAACAACCAATCATTCAAGATGGAAGGAATCAAGAATCTACCATCAATGGTCAAACAA
GGTTATTACATGGTAAAACTCGATATCAAGAAAGCTTACCTACACGTGTTAGTAGATCCA
CAATACAGAGACTTATTACGCTTCGTGTGGAAAGGTTCGCATTACCGTTGGAAAACAATG
CCGTTCGGGTTATCGACACACAGCGATGAAAATTACACCTTTAAAGCAACTTTAAATTAA
ATTAAAAGTGGATTTAAAGTCCTATAAAAAAGTCACTTAAAAATTAATTTAAAAGCAATT
TTTTAAATGACCTTTAAAATCACCTTTAAAATCACCTTTAAAATTACCTTTAAAATCACC
TTTAAAATTAACTTTAAAATGACCTTGAAAATTACCTTGAAAATTACCTTTAAAATGACC
TTTAAAATTACCTTTATAATGCTCTTTAAAATTAAGTTTAAAATTACCTTTATAAAGCCC
TTTAAAATTAACTTTATAATGCTCTTTAAAATTACTTAAAAATATGATTAAAAATTATAT
TAATAATTACATTTAAAAGCACCTTATTAATAATGCTATAAAAATAAATAAAAAAAATTT
AAAAATTATTTTAAAACTATAGTANAAATAAAATTTTATGNAAAAATAAAATACACAG
Length of connected seq. 1248
Full length Seq ID -
Full length Seq. -
Length of full length seq. -