>CHM796 (CHM796Q) /CSM/CH/CHM7-D/CHM796Q.Seq.d/
GTGGTTCATTGGTATCTATTAGTGGTTCTGGTTTTAATTGTGGCATTAGTAATGTATTGT
TTGGTGGTGCTGCATGCTCAAATCCAAAGGTTAAAACAGATGGACTCTTAACTTGTACAA
CTCCTTCCTCTGATAATAATGGTCCAGCTGATATTGTTGTCAAAGGTTCTGATGGTAGTA
CCGTTACATTAACTGAAGCCTATAACTATGTTTCAACCATTGCAATTACTTCATGTGCAC
TCGGTGCAAACAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTCAA
ATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTC
CAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTG
TATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGTAGTA
AGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATA
TTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGXXXXXXXXXXTCAAA
GAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACAA
CATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAGG
ATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATTC
CATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTAA
TTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAAA
CTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGATC
AAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGTT
GGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGATG
GTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAAT
CCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCTG
CAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACAAAT
CAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAAAGAAACAAGCAAAAG
AAAAGAAAGAAG

GSLVSISGSGFNCGISNVLFGGAACSNPKVKTDGLLTCTTPSSDNNGPADIVVKGSDGST
VTLTEAYNYVSTIAITSCALGANNGNFFSCDISSPVDTSNRPSCSSLFSSATLQTLGSSP
RCEYTASNILMVTLGSGESVSVGQQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDI
KAPNVLDSCSPLVL---

---QRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKKDDEGQSLDGEKLAFTP
KFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPKTVSLELFNGGSQLSIN
GLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVDGNIQCKCNHLTEFGLI
EFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNKSKKTKEQINKEKEDKK
KQAKEKKE

Frame A:
vvhwyllvvlvlivalvmyclvvlhaqiqrlkqmds*lvqllpliimvqlillskvlmvv
plh*lkpitmfqplqllhvhsvqtmvislvvisllqlilqiglhvvlfsllqlyklwvvl
qdvnillqtf*wlhwvvvkvyqlannwnflkveslqkmvvriiikl*hwnhhkiqlqw*i
lklqmf*ihvvhwy*---

---skncnw*rtiysck**rfldyni*nstygik*ewsidwfqkg**rsis*w*ktcfhs
kiqysikcfike*iktnl*nhw*tnyssikysfqs*i*snhfpkncft*tfqwwlsiinq
wp*rsnyh*ygktfttkr*ri*mwlvelq*krmvnrwlfnp*srw*ysm*m*psyrvwfn
*ickilskhldhywtsswwccicscngwyccigkekekqkqkeqikenqrtnqqrkrrqk
etskrker

Frame B:
wfigiy*wfwf*lwh**civwwccmlkskg*nrwtlnlynsfl***wss*yccqrf*w*y
ryin*sl*lcfnhcnyfmctrckqw*fl*l*ylfss*yfk*afm*fsflfcnftnfg*fs
km*iycfkhsngyig*w*kciswptigifsrwnhfkrw**e*lsnynigtttrfnssgry
*sskcfrfm*sigi---

---QRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKKDDEGQSLDGEKLAFTP
KFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPKTVSLELFNGGSQLSIN
GLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVDGNIQCKCNHLTEFGLI
EFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNKSKKTKEQINKEKEDKK
KQAKEKKE

Frame C:
GSLVSISGSGFNCGISNVLFGGAACSNPKVKTDGLLTCTTPSSDNNGPADIVVKGSDGST
VTLTEAYNYVSTIAITSCALGANNGNFFSCDISSPVDTSNRPSCSSLFSSATLQTLGSSP
RCEYTASNILMVTLGSGESVSVGQQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDI
KAPNVLDSCSPLVL---

---kelqlvknhlqlqvikvsrlqhlklyiwn*vrvvnrlvskrmmkvnllmvknllslq
nsvfhqvfyqrin*nkplkslvn*lqfhqifisiinlikpfsqklfhlnfsmvalnyqsm
alkiklsliwenihhqkiknlnvvggapikkng*qmvvqpik*mvifnvnvtilqslv*l
nlqnplktfgslldq*lvvlylqlqwlvllyw*rerktktkrtnqrkpknkstkkkktkr
nkqkkrkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL489 (SHL489Q) /CSM/SH/SHL4-D/SHL489Q.Seq.d/                       1247   0.0
SHL119 (SHL119Q) /CSM/SH/SHL1-A/SHL119Q.Seq.d/                       1247   0.0
SHK878 (SHK878Q) /CSM/SH/SHK8-D/SHK878Q.Seq.d/                       1247   0.0
SHK593 (SHK593Q) /CSM/SH/SHK5-D/SHK593Q.Seq.d/                       1247   0.0
SHK142 (SHK142Q) /CSM/SH/SHK1-B/SHK142Q.Seq.d/                       1247   0.0
SHJ824 (SHJ824Q) /CSM/SH/SHJ8-A/SHJ824Q.Seq.d/                       1247   0.0
SHG125 (SHG125Q) /CSM/SH/SHG1-B/SHG125Q.Seq.d/                       1247   0.0
SHD762 (SHD762Q) /CSM/SH/SHD7-C/SHD762Q.Seq.d/                       1247   0.0
SHD428 (SHD428Q) /CSM/SH/SHD4-B/SHD428Q.Seq.d/                       1247   0.0
SHD253 (SHD253Q) /CSM/SH/SHD2-C/SHD253Q.Seq.d/                       1247   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX119904|BX119904.4 Human DNA sequence from clone RP11-232D9 on chromosome X Contains  two pseudogenes similar to part of solute carrier family 6  (neurotransmitter transporter) member 14 (SLC6A14) and a novel gene.    36   0.31   12
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    48   0.44   1
AC103541|AC103541.6 Homo sapiens BAC clone RP11-818M13 from 4, complete sequence.    48   0.44   1
AC097518|AC097518.2 Homo sapiens BAC clone RP11-487E13 from 4, complete sequence.    48   0.44   1
AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFT SEQUENCE, 51 unordered pieces.    48   0.44   1
U66528|U66528.1 Dictyostelium discoideum CigB (cigB) mRNA, partial cds.    38   0.58   3
AJ410884|AJ410884.1 Influenza A virus (swine/Cotes d'Armor/1515/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   0.83   2
AJ410883|AJ410883.1 Influenza A virus (swine/Cotes d'Armor/1482/99 (H1N1)) partial N1NA  gene for Neuraminidase, genomic RNA.    42   0.85   2
AC113206|AC113206.10 Mus musculus chromosome 6, clone RP23-320B19, complete sequence.    46   0.88   9
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   0.98   18

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve...    50   2e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F...    50   2e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c...    50   2e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr...    50   2e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind...    48   7e-04
CP000478_2890(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    47   0.001
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre...    47   0.002
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet...    46   0.003
AF166382_1(AF166382|pid:none) Mus musculus serpentine receptor (...    45   0.004
AY181246_1(AY181246|pid:none) Homo sapiens G protein-coupled rec...    45   0.007

 psg: 0.92  gvh: 0.50  alm: 0.22  top: 1.17  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.17  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.01  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHM796 is cyt

>CHM796F.Seq
GTGGTTCATTGGTATCTATTAGTGGTTCTGGTTTTAATTGTGGCATTAGTAATGTATTGT
TTGGTGGTGCTGCATGCTCAAATCCAAAGGTTAAAACAGATGGACTCTTAACTTGTACAA
CTCCTTCCTCTGATAATAATGGTCCAGCTGATATTGTTGTCAAAGGTTCTGATGGTAGTA
CCGTTACATTAACTGAAGCCTATAACTATGTTTCAACCATTGCAATTACTTCATGTGCAC
TCGGTGCAAACAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTCAA
ATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTC
CAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTG
TATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGTAGTA
AGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATA
TTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAGNNNNNNNNNN

>CHM796Z.Seq
NNNNNNNNNNTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAG
GTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGA
TTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTC
CAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAA
TCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAA
CCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCA
ATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAG
AATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAA
CCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAA
TTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTG
TTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAA
ACAAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAA
AGAAACAAGCAAAAGAAAAGAAAGAAG

>CHM796P.Seq
GTGGTTCATTGGTATCTATTAGTGGTTCTGGTTTTAATTGTGGCATTAGTAATGTATTGT
TTGGTGGTGCTGCATGCTCAAATCCAAAGGTTAAAACAGATGGACTCTTAACTTGTACAA
CTCCTTCCTCTGATAATAATGGTCCAGCTGATATTGTTGTCAAAGGTTCTGATGGTAGTA
CCGTTACATTAACTGAAGCCTATAACTATGTTTCAACCATTGCAATTACTTCATGTGCAC
TCGGTGCAAACAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTCAA
ATAGGCCTTCATGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTC
CAAGATGTGAATATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTG
TATCAGTTGGCCAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGTAGTA
AGAATAATTATCAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATA
TTAAAGCTCCAAATGTTTTAGATTCATGTAGTCCATTGGTATTAG----------TCAAA
GAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACAA
CATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAGG
ATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATTC
CATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTAA
TTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAAA
CTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGATC
AAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGTT
GGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGATG
GTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAAT
CCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCTG
CAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACAAAT
CAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAAAGAAACAAGCAAAAG
AAAAGAAAGAAG