CHM788
Library CH
(Link to library)
Clone ID CHM788
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID CHM788P
(Link to Original site)
Representative DNA sequence
>CHM788 (CHM788Q) /CSM/CH/CHM7-D/CHM788Q.Seq.d/
TATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCANAACTGGCGAT
GTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAG
GTGTTAGTTCATTAANACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTG
TGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATG
GTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGG
TAACGTANAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCANATCTTGATGGT
AGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACA
ATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGT
TACTAGGTCATTGGATCGAAAGTGAAGGXXXXXXXXXXTAACGCAAGTGTCCAAAGGCAG
GCTCAGTGAGAACAGAAATTCTCACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGA
TTTTCAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATC
TTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCG
CTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAG
AATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCG
TCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGAT
TTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAG
TGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCT
AGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTG
GGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCC
GGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGAT
TGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGNA
GGGGTTGAGGC
sequence update 2002.10.25
Translated Amino Acid sequence
camknrss*waifgkxnwrcglnqilg*dv*hslidttkgvsslxqqdgghgsryplrsv
*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvtxklecefewscl*cxs*w*
*qifkriyfegrsgegfhnngihlwvsrs*glg*LSLIRLLGHWIESE---

---TQVSKGRLSENRNSHVE*kgkslldsdfqy*selgnqglsilyvlks*a*rcqksyh
rdnwlvaakrs*rrcflilrcrlflsl*srihkvldcsptnkerelgldrretg*fyptv
vnclrnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnasksesiletqtkcfrv*
ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyilvplnssivddyqmn*vl
*ase*rsvtxglr


Translated Amino Acid sequence (All Frames)
Frame A:
yvq*kigalsgpflvsxtgdvg*tkywdktsnih**ipqkvlvh*xsrtvamevgir*gv
cnnspakwtspeng*r*qwmvdaqslkeviilltcrka*r*rxslnvnssgvvfsaxldg
sskyskeftlkaevgkgsitmeftyg*vdpkvwvnsl**gy*vigskvk---

---*rkcpkagsvrteilt*skrakaclilifstnrnwetrayrsfmclnlkprgvrkvt
tgitglwqpsahsdaaf*sfdvgssyhceaeftkcwivhpltrnvswv*tvvrqvsftll
lsivcviva*fstrgtvmpdhwsvglfdkivtcryhpldng*tplsqnpf*krkpnalec
eccr*h*vvgggplstlnhminrcytavsfrllwwvakf*fissfrstlrl*ttik*trc
cklpssvqlrrg*g

Frame B:
mcnek*ellvghfw*axlamwvepnigirrltftnryhkrc*fixtagrwpwksvsakec
vtthlpnglalkmddassgwsmpnr*kk**yf*rvgrregnvxa*m*irvelslvxilmv
vaniqknll*rpkwgrvp*qwnslmgesilrfgltlsnkvtrsldrk*r---

---nasvqrqaq*eqkfsrrvkgqkpa*f*fsvligtgkpgpidplca*ilslevseklp
qg*lacgsqaliatllfdpsmsalliivkqnsqsvglfth*qgt*agfrps*drlvlpyc
cqlfa***hdlvreelscritgl*vyltk**paatirwimaerl*vrihsrnanqml*sv
nvvgnirllvgdhfql*ti*liavtlqfpsgycggwlnsnlyprsaqlfdcrrlsnelga
vsfrvafsyxgve

Frame C:
camknrss*waifgkxnwrcglnqilg*dv*hslidttkgvsslxqqdgghgsryplrsv
*qltcqmd*p*kwmtlavdgrcpivkrsdntfnv*egvkvtxklecefewscl*cxs*w*
*qifkriyfegrsgegfhnngihlwvsrs*glg*LSLIRLLGHWIESE---

---TQVSKGRLSENRNSHVE*kgkslldsdfqy*selgnqglsilyvlks*a*rcqksyh
rdnwlvaakrs*rrcflilrcrlflsl*srihkvldcsptnkerelgldrretg*fyptv
vnclrnssmi*yernchagslvcrfi*qnsdlplpsvg*wlnasksesiletqtkcfrv*
ml*vtlgcwwgttfnfkpyd*sllhcsflpvivvgg*iliyilvplnssivddyqmn*vl
*ase*rsvtxglr

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHM788 (CHM788Q) /CSM/CH/CHM7-D/CHM788Q.Seq.d/ 2430 0.0
VHK846 (VHK846Q) /CSM/VH/VHK8-B/VHK846Q.Seq.d/ 1477 0.0
VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/ 1477 0.0
VHA465 (VHA465Q) /CSM/VH/VHA4-C/VHA465Q.Seq.d/ 1477 0.0
SHA880 (SHA880Q) /CSM/SH/SHA8-D/SHA880Q.Seq.d/ 1477 0.0
CHI557 (CHI557Q) /CSM/CH/CHI5-C/CHI557Q.Seq.d/ 1477 0.0
VHK190 (VHK190Q) /CSM/VH/VHK1-D/VHK190Q.Seq.d/ 1461 0.0
VHA301 (VHA301Q) /CSM/VH/VHA3-A/VHA301Q.Seq.d/ 1461 0.0
SLE369 (SLE369Q) /CSM/SL/SLE3-C/SLE369Q.Seq.d/ 1461 0.0
CHL604 (CHL604Q) /CSM/CH/CHL6-A/CHL604Q.Seq.d/ 1453 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 1386 0.0 2
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene. 973 0.0 4
AC136838|AC136838.31 Medicago truncatula clone mth1-5j15, WORKING DRAFT SEQUENCE, 12 unordered pieces. 347 0.0 18
AC136838|AC136838.31 Medicago truncatula clone mth1-5j15, WORKING DRAFT SEQUENCE, 12 unordered pieces. 347 0.0 20
AC121240|AC121240.27 Medicago truncatula clone mth1-51o19, WORKING DRAFT SEQUENCE, 12 ordered pieces. 347 0.0 20
AC151591|AC151591.1 Nematostella vectensis clone JGIAFIN-297A8, WORKING DRAFT SEQUENCE, 3 unordered pieces. 339 0.0 15
AC150267|AC150267.2 Zea mays clone ZMMBBc0319N15, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces. 347 0.0 13
AL158197|AL158197.26 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP11-368H14. 325 0.0 12
AF289037|AF289037.1 Guillardia theta 28S ribosomal RNA gene, complete sequence. 345 0.0 10
AY822609|AY822609.1 Prorocentrum micans large subunit ribosomal RNA gene, complete sequence. 307 0.0 10
dna update 2005. 6.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP... 140 1e-31
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence... 104 7e-21
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo... 99 2e-19
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p... 78 6e-13
CP000497_644(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 59 1e-12
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ... 73 2e-11
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704... 68 8e-10
U12823_1(U12823|pid:none) Acanthamoeba polyphaga CDC:0187:1 hemo... 41 4e-04
BC115436_1(BC115436|pid:none) Mus musculus leucyl-tRNA synthetas... 45 0.004
EU955547_1(EU955547|pid:none) Zea mays clone 1536647 hypothetica... 42 0.034
protein update 2009. 4. 9
PSORT

psg: 0.76 gvh: 0.60 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for CHM788 is cyt

5' end seq. ID CHM788F
5' end seq.
>CHM788F.Seq
TATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCANAACTGGCGAT
GTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAG
GTGTTAGTTCATTAANACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTG
TGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATG
GTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGG
TAACGTANAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCANATCTTGATGGT
AGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACA
ATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGT
TACTAGGTCATTGGATCGAAAGTGAAGGNNNNNNNNNN
Length of 5' end seq. 518
3' end seq. ID CHM788Z
3' end seq.
>CHM788Z.Seq
NNNNNNNNNNTAACGCAAGTGTCCAAAGGCAGGCTCAGTGAGAACAGAAATTCTCACGTA
GAGTAAAAGGGCAAAAGCCTGCTTGATTCTGATTTTCAGTACTAATCGGAACTGGGAAAC
CAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCTAGAGGTGTCAGAAAAGTTAC
CACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTT
CGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTGTTCACCC
ACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACT
GTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCATGCCGGA
TCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGTTGGATAA
TGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTTTAGAGTG
TGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAAACCATAT
GATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTA
ATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAACTAGGTG
CTGTAAGCTTCCGAGTAGCGTTCAGTTACGNAGGGGTTGAGGC
Length of 3' end seq. 763
Connected seq. ID CHM788P
Connected seq.
>CHM788P.Seq
TATGTGCAATGAAAAATAGGAGCTCTTAGTGGGCCATTTTTGGTAAGCANAACTGGCGAT
GTGGGTTGAACCAAATATTGGGATAAGACGTCTAACATTCACTAATAGATACCACAAAAG
GTGTTAGTTCATTAANACAGCAGGACGGTGGCCATGGAAGTCGGTATCCGCTAAGGAGTG
TGTAACAACTCACCTGCCAAATGGACTAGCCCTGAAAATGGATGACGCTAGCAGTGGATG
GTCGATGCCCAATCGTTAAAAGAAGTGATAATACTTTTAACGTGTAGGAAGGCGTGAAGG
TAACGTANAAGCTTGAATGTGAATTCGAGTGGAGTTGTCTTTAGTGCANATCTTGATGGT
AGTAGCAAATATTCAAAAGAATTTACTTTGAAGGCCGAAGTGGGGAAGGGTTCCATAACA
ATGGAATTCACTTATGGGTGAGTCGATCCTAAGGTTTGGGTTAACTCTCTCTAATAAGGT
TACTAGGTCATTGGATCGAAAGTGAAGG----------TAACGCAAGTGTCCAAAGGCAG
GCTCAGTGAGAACAGAAATTCTCACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGA
TTTTCAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATC
TTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCG
CTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAG
AATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCG
TCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGAT
TTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAG
TGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCT
AGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTG
GGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCC
GGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGAT
TGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGNA
GGGGTTGAGGC
Length of connected seq. 1261
Full length Seq ID -
Full length Seq. -
Length of full length seq. -