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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM769
Library CH
(Link to library)
Clone ID CHM769
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHM769 (CHM769Q) /CSM/CH/CHM7-C/CHM769Q.Seq.d/
XXXXXXXXXXGTAAATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCCATGTACT
GATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCACT
CAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTG
GAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGT
TATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTAT
TGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCT
CCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAAT
GATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCT
TTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCT
GCTATATTTGCGGGTAAGAAAGGTTATGATGCTTGGAAAACAAGTCAAGGAAATGTTATG
GCAGCTTCACAAGCTAATCCATTATATACTCAATCAAGTAATGGAGGTGAAAATCCACTC
TATAACTCACCAACATAAATCCAAAAACCTAATTTATAAAATCATGTATTGTTTTAATTT
TAATTTTTTTCCAGTCTTATTTTCATA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---KCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTLE
GGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCAP
DNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLGAA
IFAGKKGYDAWKTSQGNVMAASQANPLYTQSSNGGENPLYNSPT*iqkpnl*nhvlf*f*
ffsslifi
Translated Amino Acid sequence (All Frames) 
Frame A:
---*mcssrfsl**w*smy**clcrfs**yrq*pswsmhsnsnc*m*fg**myglqlylg
rwl*cnstclsklwcl*nwll*twfrl*ikg*slffrlvly*ssm*ckiwlhsir*kmcs
****msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyckcccswcccfrcc
yicg*erl*clenksrkcygsfts*siiysik*wr*kstl*ltninpkt*fikscivlil
iffqsyfh


Frame B:
---KCVAQDSHCDDGNPCTDNACVASANSTANSQVGQCTQTPTAKCDLGDKCMVYSCTLE
GGCNATQRVCPNSGACKIGYCEPGFGCKLKDRVCSSDWYCIEAQCDAKYGCIQFDRRCAP
DNSKCQEGVCVNNTAIGKNDGKCISEDYDPKPFVCQKAALVSTAVIASVVVVGAVVLGAA
IFAGKKGYDAWKTSQGNVMAASQANPLYTQSSNGGENPLYNSPT*iqkpnl*nhvlf*f*
ffsslifi


Frame C:
---nv*lkilivmmvihvlimlvslqlivppiaklvnalklqllnviwvinvwftvvpwk
vvvmqlnvfvqtlvlvklvivnlvsvvn*riefvlpigivlklnvmqnmvafnsiedvll
iivnvkkvsv*tillsvkmmenvflkimiqnhlfvkkll*fqllllqvll*lvllf*vll
ylrvrkvmmlgkqvkemlwqlhklihyilnqvmevkihsithqhksknliykimycfnfn
ffpvlfs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHG135 (SHG135Q) /CSM/SH/SHG1-B/SHG135Q.Seq.d/                       1390   0.0
SHF677 (SHF677Q) /CSM/SH/SHF6-D/SHF677Q.Seq.d/                       1390   0.0
SFI733 (SFI733Q) /CSM/SF/SFI7-B/SFI733Q.Seq.d/                       1390   0.0
SFE864 (SFE864Q) /CSM/SF/SFE8-C/SFE864Q.Seq.d/                       1390   0.0
CHR774 (CHR774Q) /CSM/CH/CHR7-D/CHR774Q.Seq.d/                       1390   0.0
CHR444 (CHR444Q) /CSM/CH/CHR4-B/CHR444Q.Seq.d/                       1390   0.0
CHR202 (CHR202Q) /CSM/CH/CHR2-A/CHR202Q.Seq.d/                       1390   0.0
CHQ678 (CHQ678Q) /CSM/CH/CHQ6-D/CHQ678Q.Seq.d/                       1390   0.0
CHP820 (CHP820Q) /CSM/CH/CHP8-A/CHP820Q.Seq.d/                       1390   0.0
CHP664 (CHP664Q) /CSM/CH/CHP6-C/CHP664Q.Seq.d/                       1390   0.0
own update 2003.10. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    66   1e-06  1
AJ548837|AJ548837.1 Dictyostelium discoideum mRNA for extracellular signalling molecule  DicA (dicA gene).    60   4e-05  2
AJ548838|AJ548838.1 Dictyostelium discoideum dicA gene for extracellular signalling  molecule DicA, exons 1-2.    60   5e-05  2
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    42   4e-04  5
BH701655|BH701655.1 BOMCM56TR BO_2_3_KB Brassica oleracea genomic clone BOMCM56, DNA sequence.    48   0.035  2
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence.    50   0.062  1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50   0.062  1
CC075688|CC075688.1 CSU-K33r.25G4.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.25G4, DNA sequence.    50   0.062  1
CX053834|CX053834.1 UCRCS09_8E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8E08-I15-1-5.g, mRNA sequence.    50   0.062  1
AZ541534|AZ541534.1 ENTGE45TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    50   0.062  1
dna update 2005. 6.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                423   e-117
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   184   2e-45
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   181   2e-44
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   173   6e-42
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                162   8e-39
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                135   2e-30
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                128   2e-28
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    72   2e-11
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    68   3e-10
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    66   1e-09
protein update 2009. 5.20
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.16  top: 0.73  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CHM769 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHM769Z
3' end seq. 
>CHM769Z.Seq
NNNNNNNNNNGTAAATGTGTAGCTCAAGATTCTCATTGTGATGATGGTAATCCATGTACT
GATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCACT
CAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTG
GAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGT
TATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTAT
TGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCT
CCTGATAATAGTAAATGTCAAGAAGGTGTCTGTGTAAACAATACTGCTATCGGTAAAAAT
GATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCT
TTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCT
GCTATATTTGCGGGTAAGAAAGGTTATGATGCTTGGAAAACAAGTCAAGGAAATGTTATG
GCAGCTTCACAAGCTAATCCATTATATACTCAATCAAGTAATGGAGGTGAAAATCCACTC
TATAACTCACCAACATAAATCCAAAAACCTAATTTATAAAATCATGTATTGTTTTAATTT
TAATTTTTTTCCAGTCTTATTTTCATA
Length of 3' end seq. 747
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -