>CHM745 (CHM745Q) /CSM/CH/CHM7-B/CHM745Q.Seq.d/
ATTAAAATAATTTTTCTCGTACAAAAATAATGAGCGATAACAATTTAGAAACACCAACTA
ATGTTTCAGAGGAAACTAAAGTCGAAGAAGTTAAAGTAGAAAATACTTTACCAATTGAAG
ACGAAAAACTTGAACAACCATCAGAAGAAATTAAAGTTGAAGCCACATCAGTCTCTGTTG
AAGAAACCAAACCAACTGAAGAGGTAAAACCAGTCGAAGAAGTAAAACCAATCGAAGAAG
TAAAACCAGTTGAAGAAGTTAAACCAGTTGAAGAAGTCAAACCAGTCGAAGAAGTCAAAC
CAGTTGAAGAAGTCAAACCAACTGAAGAAGTAAAACCAGTCGAAGAAGTCAAACAAGACG
AAGAAGTCAAACCAACTGAGGAAGTTAAACAAGTCGAAGAAGTCAAACAAGTCGAAGAAG
TTAAGCAAGTCGAAGAAGTCAAACCAACTGAAGAAGTCAAACCAGTTGAAGAAGTTAAAC
CAGTTGAAGAAGTCAAACCAGTCGAAGAAGTCAAACCAGTTGAAGAAGCAAAACCAGTCG
AAGAAGTTAAACCAACTGAAGAAGTAAAGCCAGTCGAAGAAGTAAAACCAGTCGAAGAAG
TAAAACCAGTCGAAGAAGTAAAACAAGCTGAAGAAGTCAAACCAGTCGAAGANGTCAAAC
CAGTTGAAGAAGTCAAACCAGTTGAAGAAGCAAACCAACTGAAGAAGTCAAACCACCTGG
AGAAGTAAAXXXXXXXXXX

*NNFSRTKIMSDNNLETPTNVSEETKVEEVKVENTLPIEDEKLEQPSEEIKVEATSVSVE
ETKPTEEVKPVEEVKPIEEVKPVEEVKPVEEVKPVEEVKPVEEVKPTEEVKPVEEVKQDE
EVKPTEEVKQVEEVKQVEEVKQVEEVKPTEEVKPVEEVKPVEEVKPVEEVKPVEEAKPVE
EVKPTEEVKPVEEVKPVEEVKPVEEVKQAEEVKPVEXVKPVEEVKPVEEANQLKKSNHLE
K*---

Frame A:
ikiiflvqk**aiti*khqlmfqrklkskklk*kilyqlktknlnnhqkklklkphqsll
kkpnqlkr*nqskk*nqskk*nqlkklnqlkksnqskksnqlkksnqlkk*nqskksnkt
kksnqlrklnkskksnkskklskskksnqlkksnqlkklnqlkksnqskksnqlkkqnqs
kklnqlkk*sqskk*nqskk*nqskk*nklkksnqskxsnqlkksnqlkkqtn*rsqttw
rs---


Frame B:
lk*ffsyknner*qfrntn*cfrgn*srrs*srkyftn*rrkt*ttirrn*s*shislc*
rnqtn*rgktsrrsktnrrskts*rs*ts*rsqtsrrsqts*rsqtn*rsktsrrsqtrr
rsqtn*gs*tsrrsqtsrrs*asrrsqtn*rsqts*rs*ts*rsqtsrrsqts*rsktsr
rs*tn*rskasrrsktsrrsktsrrskts*rsqtsrrxqts*rsqts*rskpteevkppg
ev---


Frame C:
*NNFSRTKIMSDNNLETPTNVSEETKVEEVKVENTLPIEDEKLEQPSEEIKVEATSVSVE
ETKPTEEVKPVEEVKPIEEVKPVEEVKPVEEVKPVEEVKPVEEVKPTEEVKPVEEVKQDE
EVKPTEEVKQVEEVKQVEEVKQVEEVKPTEEVKPVEEVKPVEEVKPVEEVKPVEEAKPVE
EVKPTEEVKPVEEVKPVEEVKPVEEVKQAEEVKPVEXVKPVEEVKPVEEANQLKKSNHLE
K*---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI171 (SFI171Q) /CSM/SF/SFI1-C/SFI171Q.Seq.d/                        771   0.0
CHP873 (CHP873Q) /CSM/CH/CHP8-D/CHP873Q.Seq.d/                        771   0.0
CHM745 (CHM745Q) /CSM/CH/CHM7-B/CHM745Q.Seq.d/                        771   0.0
CHK163 (CHK163Q) /CSM/CH/CHK1-C/CHK163Q.Seq.d/                        771   0.0
CHF523 (CHF523Q) /CSM/CH/CHF5-A/CHF523Q.Seq.d/                        771   0.0
AHQ802 (AHQ802Q) /CSM/AH/AHQ8-A/AHQ802Q.Seq.d/                        771   0.0
AHI482 (AHI482Q) /CSM/AH/AHI4-D/AHI482Q.Seq.d/                        771   0.0
AHG644 (AHG644Q) /CSM/AH/AHG6-B/AHG644Q.Seq.d/                        771   0.0
AHC727 (AHC727Q) /CSM/AH/AHC7-B/AHC727Q.Seq.d/                        769   0.0
AHD318 (AHD318Q) /CSM/AH/AHD3-A/AHD318Q.Seq.d/                        765   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z37981|Z37981.1 D.discoideum gene for protein kinase.              40   2e-26  10
BW529286|BW529286.1 Ciona savignyi cDNA, clone:cslv010m05, 5'end, single read.    48   8e-15  6
BW559326|BW559326.1 Ciona savignyi cDNA, clone:cslv010m05, 3'end, single read.    48   8e-15  6
CV219883|CV219883.1 EST879593 non-normalized T1 cDNA library Trichomonas vaginalis cDNA clone TVTD023 5' end, mRNA sequence.    52   1e-13  3
AZ163905|AZ163905.1 SP_0074_B2_B08_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=74 Col=16 Row=D, DNA sequence.    44   4e-13  6
AC084684|AC084684.1 Caenorhabditis briggsae cosmid MM06C2, complete sequence.    30   4e-10  14
AZ672575|AZ672575.1 ENTLT12TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42   6e-10  5
BH149496|BH149496.1 ENTPG84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    32   7e-09  5
AZ541838|AZ541838.1 ENTFO93TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    32   8e-09  5
CZ542968|CZ542968.1 SRAA-aad47b11.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    44   1e-08  4

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 185,822,077

 psg: 0.57  gvh: 0.23  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHM745 is nuc

>CHM745F.Seq
ATTAAAATAATTTTTCTCGTACAAAAATAATGAGCGATAACAATTTAGAAACACCAACTA
ATGTTTCAGAGGAAACTAAAGTCGAAGAAGTTAAAGTAGAAAATACTTTACCAATTGAAG
ACGAAAAACTTGAACAACCATCAGAAGAAATTAAAGTTGAAGCCACATCAGTCTCTGTTG
AAGAAACCAAACCAACTGAAGAGGTAAAACCAGTCGAAGAAGTAAAACCAATCGAAGAAG
TAAAACCAGTTGAAGAAGTTAAACCAGTTGAAGAAGTCAAACCAGTCGAAGAAGTCAAAC
CAGTTGAAGAAGTCAAACCAACTGAAGAAGTAAAACCAGTCGAAGAAGTCAAACAAGACG
AAGAAGTCAAACCAACTGAGGAAGTTAAACAAGTCGAAGAAGTCAAACAAGTCGAAGAAG
TTAAGCAAGTCGAAGAAGTCAAACCAACTGAAGAAGTCAAACCAGTTGAAGAAGTTAAAC
CAGTTGAAGAAGTCAAACCAGTCGAAGAAGTCAAACCAGTTGAAGAAGCAAAACCAGTCG
AAGAAGTTAAACCAACTGAAGAAGTAAAGCCAGTCGAAGAAGTAAAACCAGTCGAAGAAG
TAAAACCAGTCGAAGAAGTAAAACAAGCTGAAGAAGTCAAACCAGTCGAAGANGTCAAAC
CAGTTGAAGAAGTCAAACCAGTTGAAGAAGCAAACCAACTGAAGAAGTCAAACCACCTGG
AGAAGTAAANNNNNNNNNN