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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM726
Library CH
(Link to library)
Clone ID CHM726
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14405-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHM726 (CHM726Q) /CSM/CH/CHM7-B/CHM726Q.Seq.d/
TTTTTTTTNNAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTNNNNTTAAAANTTTTNNA
NAANAAAAAANGGNAANNANNNNAANAAAAANAANNNTTTTTCNAAAAAANTTTTTTTTT
TNAAAAAAAAAANNNTTTTTAAANNNTTTTTAAAAAAAAAAAAAGGNNNTTTTTTTTTTT
TNNAANNNNAANNGGGGNTTTNAAAAAATTTAAAAAAAANNCNAANNGGGGNAAAAAAAA
AAANNTTTTNAAAAAANNGGGGGNNANNCCCTTTNNNCCCAAAAAAAAANNAAAAAAANN
TTTTTNAANNGGGGGGGNNNAANCCCCCCCCNAAAAAAAAAAGGNNCCCCGGNAAAAANC
CCCCCCCNNNNAANNTNAAAANNTTTTGGGGNCNNTTNANNTTTTTTNGGCCCCCCAAAA
AAAAAAAAANGCCCCCCTTTTTTNGNTTTAAANNNNAAAANNNAAAGGGGTTNNNNNNNN
NTNNACNNGAAAAANCCNTTTTCNNNTTTTTTTTGGGNNGGGGGGGGGGGGGGGGGGGGT
TNNTTTTCCNGGGGGGGGGGGGGGGGNGNAANTTTTTNGGGGGCCCCNNNANNNANCCCA
NNNGGGGCCNCCNACNTNANNCCNCNTTTNAAAAAAAAAAACNNNAANNTTTCCCCCNAA
ANNNNANCCCCCCCCCNNTTTTTTTTTTTTAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
ffxkkkkkkkiffxx*XFXXXKXGXXXXKXXXFSKKXFFXKKKXXFKXFLKKKKGXFFFX
XXXXGXXKNLKKXXXGXKKKXFXKXXGXXPXXPKKXXKXXFXXGGXXPPPKKKRXPGKXP
PPXXXKXFWGXXXFFXPPKKKKXPPFFXFKXXXXKGXXXXXXEKXXFXFFLGXGGGGGGX
XFXGGGGGXXFXGGPXXXPXXGXXXXXXFXKKKXXXFPXXXXPPPXFFF*kk---
Translated Amino Acid sequence (All Frames) 
Frame A:
ffxxkkkkkkkfffxxkxfxxxkxxxxxxkxxxfxkxfffxkkkxflxxf*kkkkxxfff
xxxxxgfxki*kkxxxgxkkkxfxkxggxxlxxqkkxkkxfxxxggxxppxkkkgxpxkx
ppxxxxkxfgxxxxfxgppkkkkxppfxxlxxkxxrgxxxxxxkxpfsxffwxggggggg
xfsxgggggxxfxgapxxxpxgaxxxxpxxkkknxxxspxxxxppxffffkkk---


Frame B:
ffxkkkkkkknffxxlkxxxxkkxxxxxxkxxffxkxfffxkkxxf*xxfkkkkrxffff
xxxxgxxkkfkkxxxxgkkkxxxkkxgxxpfxpkkkxkkxfxxggxxxppxkkkxprxkx
ppxxxxxxlgxxxxfxapqkkkxaplfxx*xxkxkgvxxxxtxkxxfxxffgxggggggv
xfpgggggxxxfxgpxxxxxxgpptxxxxxkkktxxfppkxxpppxffflkk---


Frame C:
ffxkkkkkkkiffxx*XFXXXKXGXXXXKXXXFSKKXFFXKKKXXFKXFLKKKKGXFFFX
XXXXGXXKNLKKXXXGXKKKXFXKXXGXXPXXPKKXXKXXFXXGGXXPPPKKKRXPGKXP
PPXXXKXFWGXXXFFXPPKKKKXPPFFXFKXXXXKGXXXXXXEKXXFXFFLGXGGGGGGX
XFXGGGGGXXFXGGPXXXPXXGXXXXXXFXKKKXXXFPXXXXPPPXFFF*kk---
Homology vs CSM-cDNA 

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Gapped
Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 358
Number of Sequences: 97611
Number of extensions: 358
Number of successful extensions: 21
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 0
length of query: 710
length of database: 80,480,566
effective HSP length: 18
effective length of query: 692
effective length of database: 78,723,568
effective search space: 54476709056
effective search space used: 54476709056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)







Dictyostelium discoideum cDNA Project Home
own update 2009. 4. 4
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 569,288
Number of Sequences: 45350330
Number of extensions: 569288
Number of successful extensions: 28200
Number of sequences better than 10.0: 0
length of query: 710
length of database: b,570,743,824
effective HSP length: 22
effective length of query: 688
effective length of database: a,573,036,564
effective search space: 34106249156032
effective search space used: 34106249156032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home
dna update 2005. 6. 9
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 405,364,030
protein update 2009. 4. 9
PSORT 

 psg: 0.67  gvh: 0.43  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.46  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for CHM726 is nuc
5' end seq. ID CHM726F
5' end seq. 
>CHM726F.Seq
TTTTTTTTNNAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTNNNNTTAAAANTTTTNNA
NAANAAAAAANGGNAANNANNNNAANAAAAANAANNNTTTTTCNAAAAAANTTTTTTTTT
TNAAAAAAAAAANNNTTTTTAAANNNTTTTTAAAAAAAAAAAAAGGNNNTTTTTTTTTTT
TNNAANNNNAANNGGGGNTTTNAAAAAATTTAAAAAAAANNCNAANNGGGGNAAAAAAAA
AAANNTTTTNAAAAAANNGGGGGNNANNCCCTTTNNNCCCAAAAAAAAANNAAAAAAANN
TTTTTNAANNGGGGGGGNNNAANCCCCCCCCNAAAAAAAAAAGGNNCCCCGGNAAAAANC
CCCCCCCNNNNAANNTNAAAANNTTTTGGGGNCNNTTNANNTTTTTTNGGCCCCCCAAAA
AAAAAAAAANGCCCCCCTTTTTTNGNTTTAAANNNNAAAANNNAAAGGGGTTNNNNNNNN
NTNNACNNGAAAAANCCNTTTTCNNNTTTTTTTTGGGNNGGGGGGGGGGGGGGGGGGGGT
TNNTTTTCCNGGGGGGGGGGGGGGGGNGNAANTTTTTNGGGGGCCCCNNNANNNANCCCA
NNNGGGGCCNCCNACNTNANNCCNCNTTTNAAAAAAAAAAACNNNAANNTTTCCCCCNAA
ANNNNANCCCCCCCCCNNTTTTTTTTTTTTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 710
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -