>CHM688 (CHM688Q) /CSM/CH/CHM6-D/CHM688Q.Seq.d/
XXXXXXXXXXCAAAATGAAATTAATCCACCAATTTCCGTTCGTTCCAATGTCGTTTTCTT
TGAACCATACTTGGCCGGTGAACCAGGCAGACACAAGGCATGTTGGAATCTCCTCGAACC
AATGCATAGAAACTACTACCAACCAATCCAATTCAAATTACCATCATTCCCAGACACTTC
ATTACCAATCACACAAATCGATGATAAAACCGGTATCTTTGATTCTCAACGTTTCCTCGC
ATTCAATAATCCACAAGCCATGAGTAAATATGAATCCTATCGTATCTACATTCATCCTTC
ACTCGGTTACAGTGGTAATGCAAAGAGATTCAAACAACAACCAGATGTCAATGAGAAAGC
TTTGATTTTGGATGGCAATGTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAAT
CTGTACCGAATATTATCAAACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAA
AGTTCTTTTGGTCAAAAATAACATATTAACTCGTGTCAAAGATGNGTGGTCTCACTCTCT
CCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCTCATATCCCACTCTACTCTCACTTTA
CCCTTACAAATCCACTCACTAAAT

---NEINPPISVRSNVVFFEPYLAGEPGRHKACWNLLEPMHRNYYQPIQFKLPSFPDTSL
PITQIDDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQQPDVNEKAL
ILDGNVYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRVKDXWSHSLL
KANVLQWS*lsyptllslypyksth*

Frame A:
---kmklihqfpfvpmsfslnhtwpvnqadtrhvgissnqcietttnqsnsnyhhsqtlh
yqshksmikpvslilnvsshsiihkp*vnmnpivstfilhsvtvvmqrdsnnnqmsmrkl
*fwmamstmdi*iqfttvksvpniikpnltfplihmqkvkffwskity*lvskmxgltls
lkpmccsghnshiplyshftltnpltk


Frame B:
---k*n*stnfrsfqcrfl*tilgr*trqtqgmlesprtna*kllptnpiqitiiprhfi
tnhtnr**nryl*fstfpriq*stshe*i*ilsylhssftrlqw*ckeiqtttrcq*esf
dfgwqclrwtfksnlql*nlyrilsnqillfr*stckr*ssfgqk*hinscqrxvvslsp
*sqcvavvitlishstltlplqihsln


Frame C:
---NEINPPISVRSNVVFFEPYLAGEPGRHKACWNLLEPMHRNYYQPIQFKLPSFPDTSL
PITQIDDKTGIFDSQRFLAFNNPQAMSKYESYRIYIHPSLGYSGNAKRFKQQPDVNEKAL
ILDGNVYDGHLNPIYNCKICTEYYQTKSYFSANPHAKGKVLLVKNNILTRVKDXWSHSLL
KANVLQWS*lsyptllslypyksth*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM688 (CHM688Q) /CSM/CH/CHM6-D/CHM688Q.Seq.d/                       1211   0.0
VHJ792 (VHJ792Q) /CSM/VH/VHJ7-D/VHJ792Q.Seq.d/                       1176   0.0
VFA838 (VFA838Q) /CSM/VF/VFA8-B/VFA838Q.Seq.d/                       1176   0.0
CHR159 (CHR159Q) /CSM/CH/CHR1-C/CHR159Q.Seq.d/                       1176   0.0
AFO507 (AFO507Q) /CSM/AF/AFO5-A/AFO507Q.Seq.d/                       1176   0.0
SHA665 (SHA665Q) /CSM/SH/SHA6-C/SHA665Q.Seq.d/                       1170   0.0
CHD534 (CHD534Q) /CSM/CH/CHD5-B/CHD534Q.Seq.d/                       1168   0.0
CFJ232 (CFJ232Q) /CSM/CF/CFJ2-B/CFJ232Q.Seq.d/                       1138   0.0
SHL560 (SHL560Q) /CSM/SH/SHL5-C/SHL560Q.Seq.d/                       1136   0.0
CHO693 (CHO693Q) /CSM/CH/CHO6-D/CHO693Q.Seq.d/                       1132   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL132975|AL132975.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16.    46   0.79   1
BZ622217|BZ622217.1 ig77a07.g1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone ig77a07 5', DNA sequence.    46   0.79   1
AP005892|AP005892.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0011D16.    32   1.5    2
AF041468|AF041468.1 Guillardia theta complete plastid genome.      38   2.4    5
CR855374|CR855374.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44   3.1    1
BX682233|BX682233.6 Zebrafish DNA sequence from clone CH211-177P5 in linkage group 16.    44   3.1    1
AL844887|AL844887.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44   3.1    1
BZ357781|BZ357781.1 SALK_131235.56.00.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_131235.56.00.x, DNA sequence.    44   3.1    1
AC126376|AC126376.2 Homo sapiens chromosome 8 clone CTD-3079P18 map 8, LOW-PASS SEQUENCE SAMPLING.    36   4.7    2
AC109392|AC109392.4 Rattus norvegicus clone CH230-79N18, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.    42   12     1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF438165_8(AF438165|pid:none) Camelpox virus M-96 from Kazakhsta...    34   2.9
CP001130_1319(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, c...    34   3.7
AE017341_517(AE017341|pid:none) Cryptococcus neoformans var. neo...    34   3.7
AY698061_1(AY698061|pid:none) Schistosoma mansoni nuclear recept...    34   3.7
AM746676_4872(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    34   3.7
AL031745_89(AL031745|pid:none) Plasmodium falciparum DNA from MA...    33   4.9
CU633865_269(CU633865|pid:none) Podospora anserina genomic DNA c...    33   8.3
AL939121_44(AL939121|pid:none) Streptomyces coelicolor A3(2) com...    33   8.3

 psg: 0.75  gvh: 0.32  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHM688 is cyt

>CHM688Z.Seq
NNNNNNNNNNCAAAATGAAATTAATCCACCAATTTCCGTTCGTTCCAATGTCGTTTTCTT
TGAACCATACTTGGCCGGTGAACCAGGCAGACACAAGGCATGTTGGAATCTCCTCGAACC
AATGCATAGAAACTACTACCAACCAATCCAATTCAAATTACCATCATTCCCAGACACTTC
ATTACCAATCACACAAATCGATGATAAAACCGGTATCTTTGATTCTCAACGTTTCCTCGC
ATTCAATAATCCACAAGCCATGAGTAAATATGAATCCTATCGTATCTACATTCATCCTTC
ACTCGGTTACAGTGGTAATGCAAAGAGATTCAAACAACAACCAGATGTCAATGAGAAAGC
TTTGATTTTGGATGGCAATGTCTACGATGGACATTTAAATCCAATTTACAACTGTAAAAT
CTGTACCGAATATTATCAAACCAAATCTTACTTTTCCGCTAATCCACATGCAAAAGGTAA
AGTTCTTTTGGTCAAAAATAACATATTAACTCGTGTCAAAGATGNGTGGTCTCACTCTCT
CCTTAAAGCCAATGTGTTGCAGTGGTCATAACTCTCATATCCCACTCTACTCTCACTTTA
CCCTTACAAATCCACTCACTAAAT