>CHM682 (CHM682Q) /CSM/CH/CHM6-D/CHM682Q.Seq.d/
AAAATAAAAAATGTCGGCAACCAAAATTCACAACAGTTATAACGATGTACCATCAGCAGT
TTTACATATTAGATCAATTCCACAAGGTACAACAGAAAATGATTTATTTAAAATTACATT
TGATCATAAATTTGGAAAATGTGTTTCAGTTAGAATTTTAGAAAGATTTCATCAAGCACT
TTTAGAGATGGATTCAGTTGAGAGTGCAACCAGACTTTTGAAATACAGCCAAAAGAATTC
ATTACTTTTACACGGTAAACCAGTTCAAATCTCTTTCTCAAAAAGTCAATCAATCAATCA
ACCAACACCACAATCACCAACCAATACCACCACCACCACTAATACTACCTCATCATCATC
ATCATCTCACCGTTCATCACCATCATCATCATCTTATAATGGATTACCACAAGCTGGTAG
TCGTCAATCAAATTTTTCACCAAATACAAATAATAGTGCACCAATTGCAGGTACAGTATT
ATTAAGTACAATTGAAAATCCAGGTTCAAACAGTATTACAATCGATCACCTTTATCATGT
ATTCTCTTCATGTGGTGAGGTATTGAGAATCGTTATGTTTAXXXXXXXXXX

k*KMSATKIHNSYNDVPSAVLHIRSIPQGTTENDLFKITFDHKFGKCVSVRILERFHQAL
LEMDSVESATRLLKYSQKNSLLLHGKPVQISFSKSQSINQPTPQSPTNTTTTTNTTSSSS
SSHRSSPSSSSYNGLPQAGSRQSNFSPNTNNSAPIAGTVLLSTIENPGSNSITIDHLYHV
FSSCGEVLRIVMF---

Frame A:
kiknvgnqnsqql*rctissfty*instrynrk*fi*nyi*s*iwkmcfs*nfrkissst
frdgfs*ecnqtfeiqpkefitftr*tssnlflkksinqstnttitnqyhhhh*yyliii
iispfitiiiil*wittsw*ssikfftkyk**ctncrysiikyn*ksrfkqyynrsplsc
ilfmw*gienryv---


Frame B:
k*KMSATKIHNSYNDVPSAVLHIRSIPQGTTENDLFKITFDHKFGKCVSVRILERFHQAL
LEMDSVESATRLLKYSQKNSLLLHGKPVQISFSKSQSINQPTPQSPTNTTTTTNTTSSSS
SSHRSSPSSSSYNGLPQAGSRQSNFSPNTNNSAPIAGTVLLSTIENPGSNSITIDHLYHV
FSSCGEVLRIVMF---


Frame C:
nkkcrqpkfttvitmyhqqfyildqfhkvqqkmiylklhliinlenvfqlef*kdfikhf
*rwiqlrvqpdf*ntakrihyfytvnqfkslsqkvnqsinqhhnhqpipppplilphhhh
hltvhhhhhhlimdyhklvvvnqifhqiqiivhqlqvqyy*vqlkiqvqtvlqsitfimy
slhvvry*eslc---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM682 (CHM682Q) /CSM/CH/CHM6-D/CHM682Q.Seq.d/                        571   e-162
CHH505 (CHH505Q) /CSM/CH/CHH5-A/CHH505Q.Seq.d/                        569   e-161
CHH184 (CHH184Q) /CSM/CH/CHH1-D/CHH184Q.Seq.d/                        569   e-161
CHR380 (CHR380Q) /CSM/CH/CHR3-D/CHR380Q.Seq.d/                        567   e-161
SLB243 (SLB243Q) /CSM/SL/SLB2-B/SLB243Q.Seq.d/                        373   e-102
CHN471 (CHN471Q) /CSM/CH/CHN4-C/CHN471Q.Seq.d/                        373   e-102
CFH159 (CFH159Q) /CSM/CF/CFH1-C/CFH159Q.Seq.d/                        373   e-102
VSG881 (VSG881Q) /CSM/VS/VSG8-D/VSG881Q.Seq.d/                         40   0.037
VFF818 (VFF818Q) /CSM/VF/VFF8-A/VFF818Q.Seq.d/                         40   0.037
VFM884 (VFM884Q) /CSM/VF/VFM8-D/VFM884Q.Seq.d/                         36   0.58

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC123007|AC123007.3 Rattus norvegicus clone CH230-37C11, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    48   0.002  5
AL390894|AL390894.2 Human chromosome 14 DNA sequence BAC R-572M18 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    44   0.064  3
AC114461|AC114461.6 Rattus norvegicus 1 BAC CH230-14J24 (Children's Hospital Oakland Research Institute) complete sequence.    44   0.17   5
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    30   0.17   10
AC110986|AC110986.5 Rattus norvegicus clone CH230-296B16, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   0.19   1
CR391906|CR391906.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-211K10.    44   0.22   6
AC108318|AC108318.8 Rattus norvegicus 2 BAC CH230-256E18 (Children's Hospital Oakland Research Institute) complete sequence.    36   0.35   5
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    32   0.57   7
AP005287|AP005287.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11.    46   0.75   1
AP004817|AP004817.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0539D10.    46   0.75   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX547938_13(BX547938|pid:none) Zebrafish DNA sequence from clone...    62   9e-09
(Q8R081) RecName: Full=Heterogeneous nuclear ribonucleoprotein L...    56   6e-07
A33616(A33616) heterogeneous ribonuclear particle protein L - hu...    56   6e-07
AK313652_1(AK313652|pid:none) Homo sapiens cDNA, FLJ94229, highl...    56   6e-07
BC054655_1(BC054655|pid:none) Danio rerio heterogeneous nuclear ...    56   6e-07
AK144684_1(AK144684|pid:none) Mus musculus lung RCB-0558 LLC cDN...    56   6e-07
(P14866) RecName: Full=Heterogeneous nuclear ribonucleoprotein L...    56   6e-07
AK085906_1(AK085906|pid:none) Mus musculus 16 days neonate heart...    56   6e-07
S15552(S15552;S18668) polypyrimidine tract-binding protein 1 - r...    56   8e-07
(Q29099) RecName: Full=Polypyrimidine tract-binding protein 1;  ...    56   8e-07

 psg: 0.59  gvh: 0.45  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHM682 is cyt

>CHM682F.Seq
AAAATAAAAAATGTCGGCAACCAAAATTCACAACAGTTATAACGATGTACCATCAGCAGT
TTTACATATTAGATCAATTCCACAAGGTACAACAGAAAATGATTTATTTAAAATTACATT
TGATCATAAATTTGGAAAATGTGTTTCAGTTAGAATTTTAGAAAGATTTCATCAAGCACT
TTTAGAGATGGATTCAGTTGAGAGTGCAACCAGACTTTTGAAATACAGCCAAAAGAATTC
ATTACTTTTACACGGTAAACCAGTTCAAATCTCTTTCTCAAAAAGTCAATCAATCAATCA
ACCAACACCACAATCACCAACCAATACCACCACCACCACTAATACTACCTCATCATCATC
ATCATCTCACCGTTCATCACCATCATCATCATCTTATAATGGATTACCACAAGCTGGTAG
TCGTCAATCAAATTTTTCACCAAATACAAATAATAGTGCACCAATTGCAGGTACAGTATT
ATTAAGTACAATTGAAAATCCAGGTTCAAACAGTATTACAATCGATCACCTTTATCATGT
ATTCTCTTCATGTGGTGAGGTATTGAGAATCGTTATGTTTANNNNNNNNNN