NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM664
Library CH
(Link to library)
Clone ID CHM664
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15617-1
Original site URL
Representative seq. ID CHM664P
(Link to Original site)
Representative DNA sequence 
>CHM664 (CHM664Q) /CSM/CH/CHM6-C/CHM664Q.Seq.d/
ATTGTAGTAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAATAATAACATGAGTAACTCAAAT
AATAATAGCTCAAGTGGTAATCATAATAGTACAACAATAAATAACCCTAAAGTTAATGTA
TATAGCAATATACCAAATTCAACAACATACACATATGGCAGCGGAGGAGGTGGAACACTA
AGTGGAAATAATACTAATAATAACAACACCAACAATAACAATAATAATAATAATAATAGT
AGTGGAGATAATAAAAACCATAGTCCTGTGACCTCAGCAACAGACCGTTTAACAAAAATG
GATATAGAAGAGAAATGGGATAACAAAAATTATGAAAAAGATGAAAGAGAAAAATCACCT
CTATTTCATATCTTGGCCAGTAATTTAAATAGTTTCGGTAATTTCAAAGTTCCGAGTACA
TTTTCTTTAACACCACCAGAACCAAACAAACAACAACAACCACAACAACAACCACAACAA
CAACAACCACAACAACAACAACCACAACAACAACAACCACAACAACAACAACAACAACAA
CCACAACAACAACCACAACCACAACAACAACXXXXXXXXXXCCTTTGTGGTACCCCTGAA
TATTTGGCACCTGAAATCATTCAAAGCAAAGGTCATGGTAAAGCGGTCGATTGGTGGGCA
CTTGGTATTATAATATTTGAAATGTTGGCAGGTTATCCACCTTTCTATGATGATGATACC
TCTGCAATCTATAATAAAATTTTGGCTGGTAGAATCACTTNTCCATTAGGTTTTGATGTT
GATGNTAAAGATTTAATTAAAAGATTATTAACTGCTGATAGNACTNGTAGATTGGGTGCT
TTAAAGGATGGTGCATTAGATGTCAAAAATCATAGATGGTTTTCTGATATTAATTGGGAA
AGATTATATCAGAGAAGAGATAATGGACCATTCATTCCAAAGATTCAACATCAAGGTGAT
TCTTCANACTTTGAAATGTATGATGAAGAAGAAATGGTTGAAGAGCCTCCATCTTCAAAT
TATGNTGATCCATATGCACATCTTTTCAAGGATTTTTAAAAAATAAAAGATAATAACAAA
TAAAACAAATTATAATAATTAANAATAATAATAATAANAGTGTCAATTAANAANAACAAC
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATATATGATAAACTAATATGGTTTGTGTCAATATCTACAAATAAATTAGTTTTCATATC
ATAATAACACCAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
ivvkk*ink*ink*ink*ink*ink*ink*INNNNMSNSNNNSSSGNHNSTTINNPKVNV
YSNIPNSTTYTYGSGGGGTLSGNNTNNNNTNNNNNNNNNSSGDNKNHSPVTSATDRLTKM
DIEEKWDNKNYEKDEREKSPLFHILASNLNSFGNFKVPSTFSLTPPEPNKQQQPQQQPQQ
QQPQQQQPQQQQPQQQQQQQPQQQPQPQQQ---

---LCGTPEYLAPEIIQSKGHGKAVDWWALGIIIFEMLAGYPPFYDDDTSAIYNKILAGR
ITXPLGFDVDXKDLIKRLLTADXTXRLGALKDGALDVKNHRWFSDINWERLYQRRDNGPF
IPKIQHQGDSSXFEMYDEEEMVEEPPSSNYXDPYAHLFKDF*kikdnnk*nkl**lxiii
ixvsixxnnnnnnnnnnnnnnnnnnnnnnni**tnmvcvniyk*isfhiiitpt
Translated Amino Acid sequence (All Frames) 
Frame A:
ivvkk*ink*ink*ink*ink*ink*ink*INNNNMSNSNNNSSSGNHNSTTINNPKVNV
YSNIPNSTTYTYGSGGGGTLSGNNTNNNNTNNNNNNNNNSSGDNKNHSPVTSATDRLTKM
DIEEKWDNKNYEKDEREKSPLFHILASNLNSFGNFKVPSTFSLTPPEPNKQQQPQQQPQQ
QQPQQQQPQQQQPQQQQQQQPQQQPQPQQQ---

---plwyp*ifgt*nhskqrsw*sgrlvgtwyyni*nvgrlstfl***ylcnl**nfgw*
nhxsirf*c*x*rfn*kiinc**xx*igcfkgwcircqks*mvf*y*lgkiisekr*wti
hskdstsr*ffxl*nv**rrng*rasifklx*sictsfqgflknkr**qikqiiiixnnn
nxsvn*xxqq********************ymin*yglcqylqin*fsyhnntn

Frame B:
l**knk*ink*ink*ink*ink*ink*ink*iiit*vtqiiiaqvviiivqq*itlklmy
iaiyqiqqhthmaaeeveh*veiiliittptitiiiiiivveiiktivl*pqqqtv*qkw
i*krngitkimkkmkeknhlyfiswpvi*ivsviskfrvhfl*hhqnqtnnnnhnnnhnn
nnhnnnnhnnnnhnnnnnnnhnnnhnhnnn---

---LCGTPEYLAPEIIQSKGHGKAVDWWALGIIIFEMLAGYPPFYDDDTSAIYNKILAGR
ITXPLGFDVDXKDLIKRLLTADXTXRLGALKDGALDVKNHRWFSDINWERLYQRRDNGPF
IPKIQHQGDSSXFEMYDEEEMVEEPPSSNYXDPYAHLFKDF*kikdnnk*nkl**lxiii
ixvsixxnnnnnnnnnnnnnnnnnnnnnnni**tnmvcvniyk*isfhiiitpt

Frame C:
cskkink*ink*ink*ink*ink*ink*ink***he*lk***lkw*s**ynnk*p*s*ci
*qytkfnnihiwqrrrwntkwk*y***qhqq*q*******wr**kp*scdlsnrpfnkng
yrremg*qkl*kr*krkitsisylgq*fk*fr*fqsseyiffnttrtkqttttttttttt
ttttttttttttttttttttttttttttt---

---fvvplniwhlksfkakvmvkrsigghlvl*ylkcwqvihlsmmmiplqsiikfwlve
slxh*vlmlmxki*lkdy*llixlvdwvl*rmvh*mskiidgfliligkdyireeimdhs
fqrfnikvilxtlkcmmkkkwlkslhlqimxihmhifsrifkk*kiitnktnynn*x***
*xcqlxxttiiiiiiiiiiiiiiiiiiiiiydkliwfvsistnklvfis**hq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM664 (CHM664Q) /CSM/CH/CHM6-C/CHM664Q.Seq.d/                        906   0.0
CHI186 (CHI186Q) /CSM/CH/CHI1-D/CHI186Q.Seq.d/                        894   0.0
AHM265 (AHM265Q) /CSM/AH/AHM2-C/AHM265Q.Seq.d/                        894   0.0
CHL103 (CHL103Q) /CSM/CH/CHL1-A/CHL103Q.Seq.d/                        892   0.0
CHP121 (CHP121Q) /CSM/CH/CHP1-A/CHP121Q.Seq.d/                        886   0.0
SFH701 (SFH701Q) /CSM/SF/SFH7-A/SFH701Q.Seq.d/                        884   0.0
CHH347 (CHH347Q) /CSM/CH/CHH3-B/CHH347Q.Seq.d/                        864   0.0
AFI637 (AFI637Q) /CSM/AF/AFI6-B/AFI637Q.Seq.d/                        801   0.0
CHK312 (CHK312Q) /CSM/CH/CHK3-A/CHK312Q.Seq.d/                        609   e-173
CHJ469 (CHJ469Q) /CSM/CH/CHJ4-C/CHJ469Q.Seq.d/                        601   e-170
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M38703|M38703.1 Dictyostelium discoideum protein kinase (Dd GPK2) gene, exons 1 and 2.   488   0.0    6
CD167015|CD167015.1 MM1-0008P-R014-B11-U.B MM1-0008 Schistosoma mansoni cDNA clone MM1-0008P-R014-B11.B, mRNA sequence.    74   7e-09  1
CR354088|CR354088.1 Gallus gallus finished cDNA, clone ChEST371o8.    68   5e-07  1
CV511301|CV511301.1 kc39e08.y1 Xiphinema index CSEQDA01 Xiphinema index cDNA 5' similar to SW:KAPC_CAEEL P21137 CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ;contains element MSR1 repetitive element ;, mRNA sequence.    48   8e-06  2
BU401108|BU401108.1 603482232F1 CSEQCHN59 Gallus gallus cDNA clone ChEST371o8 5', mRNA sequence.    62   3e-05  1
BI451474|BI451474.1 kx24h05.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to TR:O18311 O18311 KIN-1 PROTEIN. [1] ;, mRNA sequence.    32   3e-05  3
M38794|M38794.1 Dictyostelium discoideum protein kinase (Dd GPK1) mRNA, 3' end.    40   4e-04  2
CD079895|CD079895.1 MA3-9999U-M280-A12-U.B MA3-0001 Schistosoma mansoni cDNA clone MA3-9999U-M280-A12.B, mRNA sequence.    58   4e-04  1
CD083017|CD083017.1 MA3-9999U-M340-G04-U.B MA3-0001 Schistosoma mansoni cDNA clone MA3-9999U-M340-G04.B, mRNA sequence.    58   4e-04  1
BZ391655|BZ391655.1 EINEA15TF EI_10_12_KB Entamoeba invadens genomic clone EINEA15, DNA sequence.    42   5e-04  2
dna update 2005. 5.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

JQ1150(JQ1150)protein kinase (EC 2.7.1.37) cAMP-dependent, catal...   283   9e-75
(P34099) RecName: Full=cAMP-dependent protein kinase catalytic s...   283   9e-75
BX322647_6(BX322647|pid:none) Zebrafish DNA sequence from clone ...   181   5e-44
(P51817) RecName: Full=Serine/threonine-protein kinase PRKX;    ...   180   9e-44
BC091203_1(BC091203|pid:none) Rattus norvegicus protein kinase, ...   174   6e-42
AK149937_1(AK149937|pid:none) Mus musculus bone marrow macrophag...   174   8e-42
AY728014_1(AY728014|pid:none) Pan troglodytes PRKY mRNA, partial...   172   3e-41
F31751(F31751) protein kinase catalytic chain homolog DC2 - frui...   171   7e-41
AE014296_2746(AE014296|pid:none) Drosophila melanogaster chromos...   171   7e-41
Y12638_2(Y12638|pid:none) Trypanosoma brucei brucei brucei AnTat...   169   2e-40
protein update 2009. 4. 9
PSORT 

 psg: 0.70  gvh: 0.26  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHM664 is cyt
5' end seq. ID CHM664F
5' end seq. 
>CHM664F.Seq
ATTGTAGTAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAATAATAACATGAGTAACTCAAAT
AATAATAGCTCAAGTGGTAATCATAATAGTACAACAATAAATAACCCTAAAGTTAATGTA
TATAGCAATATACCAAATTCAACAACATACACATATGGCAGCGGAGGAGGTGGAACACTA
AGTGGAAATAATACTAATAATAACAACACCAACAATAACAATAATAATAATAATAATAGT
AGTGGAGATAATAAAAACCATAGTCCTGTGACCTCAGCAACAGACCGTTTAACAAAAATG
GATATAGAAGAGAAATGGGATAACAAAAATTATGAAAAAGATGAAAGAGAAAAATCACCT
CTATTTCATATCTTGGCCAGTAATTTAAATAGTTTCGGTAATTTCAAAGTTCCGAGTACA
TTTTCTTTAACACCACCAGAACCAAACAAACAACAACAACCACAACAACAACCACAACAA
CAACAACCACAACAACAACAACCACAACAACAACAACCACAACAACAACAACAACAACAA
CCACAACAACAACCACAACCACAACAACAACNNNNNNNNNN
Length of 5' end seq. 641
3' end seq. ID CHM664Z
3' end seq. 
>CHM664Z.Seq
NNNNNNNNNNCCTTTGTGGTACCCCTGAATATTTGGCACCTGAAATCATTCAAAGCAAAG
GTCATGGTAAAGCGGTCGATTGGTGGGCACTTGGTATTATAATATTTGAAATGTTGGCAG
GTTATCCACCTTTCTATGATGATGATACCTCTGCAATCTATAATAAAATTTTGGCTGGTA
GAATCACTTNTCCATTAGGTTTTGATGTTGATGNTAAAGATTTAATTAAAAGATTATTAA
CTGCTGATAGNACTNGTAGATTGGGTGCTTTAAAGGATGGTGCATTAGATGTCAAAAATC
ATAGATGGTTTTCTGATATTAATTGGGAAAGATTATATCAGAGAAGAGATAATGGACCAT
TCATTCCAAAGATTCAACATCAAGGTGATTCTTCANACTTTGAAATGTATGATGAAGAAG
AAATGGTTGAAGAGCCTCCATCTTCAAATTATGNTGATCCATATGCACATCTTTTCAAGG
ATTTTTAAAAAATAAAAGATAATAACAAATAAAACAAATTATAATAATTAANAATAATAA
TAATAANAGTGTCAATTAANAANAACAACAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATATATGATAAACTAATATGGTTTGTGTCA
ATATCTACAAATAAATTAGTTTTCATATCATAATAACACCAACT
Length of 3' end seq. 704
Connected seq. ID CHM664P
Connected seq. 
>CHM664P.Seq
ATTGTAGTAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAATAATAACATGAGTAACTCAAAT
AATAATAGCTCAAGTGGTAATCATAATAGTACAACAATAAATAACCCTAAAGTTAATGTA
TATAGCAATATACCAAATTCAACAACATACACATATGGCAGCGGAGGAGGTGGAACACTA
AGTGGAAATAATACTAATAATAACAACACCAACAATAACAATAATAATAATAATAATAGT
AGTGGAGATAATAAAAACCATAGTCCTGTGACCTCAGCAACAGACCGTTTAACAAAAATG
GATATAGAAGAGAAATGGGATAACAAAAATTATGAAAAAGATGAAAGAGAAAAATCACCT
CTATTTCATATCTTGGCCAGTAATTTAAATAGTTTCGGTAATTTCAAAGTTCCGAGTACA
TTTTCTTTAACACCACCAGAACCAAACAAACAACAACAACCACAACAACAACCACAACAA
CAACAACCACAACAACAACAACCACAACAACAACAACCACAACAACAACAACAACAACAA
CCACAACAACAACCACAACCACAACAACAAC----------CCTTTGTGGTACCCCTGAA
TATTTGGCACCTGAAATCATTCAAAGCAAAGGTCATGGTAAAGCGGTCGATTGGTGGGCA
CTTGGTATTATAATATTTGAAATGTTGGCAGGTTATCCACCTTTCTATGATGATGATACC
TCTGCAATCTATAATAAAATTTTGGCTGGTAGAATCACTTNTCCATTAGGTTTTGATGTT
GATGNTAAAGATTTAATTAAAAGATTATTAACTGCTGATAGNACTNGTAGATTGGGTGCT
TTAAAGGATGGTGCATTAGATGTCAAAAATCATAGATGGTTTTCTGATATTAATTGGGAA
AGATTATATCAGAGAAGAGATAATGGACCATTCATTCCAAAGATTCAACATCAAGGTGAT
TCTTCANACTTTGAAATGTATGATGAAGAAGAAATGGTTGAAGAGCCTCCATCTTCAAAT
TATGNTGATCCATATGCACATCTTTTCAAGGATTTTTAAAAAATAAAAGATAATAACAAA
TAAAACAAATTATAATAATTAANAATAATAATAATAANAGTGTCAATTAANAANAACAAC
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATATATGATAAACTAATATGGTTTGTGTCAATATCTACAAATAAATTAGTTTTCATATC
ATAATAACACCAACT
Length of connected seq. 1325
Full length Seq ID -
Full length Seq. -
Length of full length seq. -