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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM571
Library CH
(Link to library)
Clone ID CHM571
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16333-1
Original site URL
Representative seq. ID CHM571P
(Link to Original site)
Representative DNA sequence 
>CHM571 (CHM571Q) /CSM/CH/CHM5-C/CHM571Q.Seq.d/
AAAAAAAAAANCAAAAATTAATTTANTTAAAAAAGAAAAAAAATNTTTAAAAAATATTCA
TATAATAATAAATAAAAANGAAAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTT
TTTTAATTTTATGTTTNGCAAAACCATCTNTTTCAAATNACCCTTTAACAACTTCAACAA
CAACAACAACAGCAACTGCNCTACCAACNACATCGGCAGCATCAACAGCAAAGGTAACAA
CAACXXXXXXXXXXAATATCCATACTATCAACTTGGTCAATTATTAAATGGTGNTTCCGA
TCAGTATAACACTGGTAATGTAAATTTCAAATCCGTTAGTAAACTTTTTANAGGTTTTCC
AACTATCGAGTATCAATTATACAATAATTACAAAGCNATCATNTCAATGATGAATGGNAC
AATCGATACATNTCAATATGATNTTTTGAGATTGAATTTNTTNTTCCTTCATGATCAATN
TTATAATAATCCAAATCCAAGTATTGACTNTAGTGAAGTTGCAAACTNTTTNTTTTTAGA
TNTTCAAATTTGTATTACCGTTCAAGTGGTTGGTAATTTACCTTGTGTTGGTTTATCNCC
ATACTTGGGTGGTCAAGTTCCAAATGCAGTATGGGTTGAACTTTTAATTCCTTTCTNTGA
TCTTCAAGTTTATCCAAATGCTNTTATCAGTAGTATCNCTTTCCAAACTCAAGTACAAGA
TCNCCAAGGTGTTTTNTTTATTGGTGATATTTNTGCTGGTAATTTTGTACCNCCATATAA
AGTACTANAGGATGGTTCAAACGCTTTCAAATTATTATCAAATANT
sequence update 2002.10.25
Translated Amino Acid sequence 
kkxqklixlkkkknx*kifi***IKXKEYKKIILYSFLVFLILCXAKPSXSNXPLTTSTT
TTTATALPTTSAASTAKVTT---

---YPYYQLGQLLNGXSDQYNTGNVNFKSVSKLFXGFPTIEYQLYNNYKAIXSMMNGTID
TXQYDXLRLNXXFLHDQXYNNPNPSIDXSEVANXXFLDXQICITVQVVGNLPCVGLSPYL
GGQVPNAVWVELLIPFXDLQVYPNAXISSIXFQTQVQDXQGVXFIGDIXAGNFVPPYKVL
XDGSNAFKLLSNX
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkxkn*fx*krkkxfkkysynnk*kxknikklyyivf*ff*fyvxqnhlfqxtl*qlqq
qqqqqlxyqxhrqhqqqr*qq---

---nihtinlvny*mvxpisitlvm*isnplvnflxvfqlssinytiitkxsxq**mxqs
ihxnmxf*d*ixxsfminxiiiqiqvltxvklqtxxf*xfkfvlpfkwlviylvlvyxht
wvvkfqmqyglnf*flsxifkfiqmllsvvslsklkykixkvfxllvifxlvilyxhiky
xrmvqtlsnyyqi

Frame B:
kkkxkinlxkkekkxlknihiiinkxeri*knyii*ffsffnfmfxktixfkxpfnnfnn
nnnsncxtnxigsinskgnnn---

---isilstwsiikwxfrsv*hw*ckfqir**tfxrfsnyrvsiiq*lqsxhxndewxnr
yxsi*xfeiefxxps*sxl**sksky*l**scklfxfrxsnlyyrssgw*ftlcwfixil
gwssskcsmg*tfnsfl*ssslskcxyq*yxfpnsstrsprcfxyw*yxcw*fctxi*st
xgwfkrfqiiikx

Frame C:
kkxqklixlkkkknx*kifi***IKXKEYKKIILYSFLVFLILCXAKPSXSNXPLTTSTT
TTTATALPTTSAASTAKVTT---

---YPYYQLGQLLNGXSDQYNTGNVNFKSVSKLFXGFPTIEYQLYNNYKAIXSMMNGTID
TXQYDXLRLNXXFLHDQXYNNPNPSIDXSEVANXXFLDXQICITVQVVGNLPCVGLSPYL
GGQVPNAVWVELLIPFXDLQVYPNAXISSIXFQTQVQDXQGVXFIGDIXAGNFVPPYKVL
XDGSNAFKLLSNX
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM571 (CHM571Q) /CSM/CH/CHM5-C/CHM571Q.Seq.d/                       1047   0.0
CHS330 (CHS330Q) /CSM/CH/CHS3-B/CHS330Q.Seq.d/                        993   0.0
CHR283 (CHR283Q) /CSM/CH/CHR2-D/CHR283Q.Seq.d/                        993   0.0
SHJ588 (SHJ588Q) /CSM/SH/SHJ5-D/SHJ588Q.Seq.d/                        987   0.0
CHR809 (CHR809Q) /CSM/CH/CHR8-A/CHR809Q.Seq.d/                        985   0.0
CHI503 (CHI503Q) /CSM/CH/CHI5-A/CHI503Q.Seq.d/                        983   0.0
CHS395 (CHS395Q) /CSM/CH/CHS3-D/CHS395Q.Seq.d/                        981   0.0
AHM661 (AHM661Q) /CSM/AH/AHM6-C/AHM661Q.Seq.d/                        981   0.0
AHM471 (AHM471Q) /CSM/AH/AHM4-C/AHM471Q.Seq.d/                        981   0.0
AHM266 (AHM266Q) /CSM/AH/AHM2-C/AHM266Q.Seq.d/                        981   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017163|AE017163.1 Prochlorococcus marinus subsp. marinus str. CCMP1375 section 3 of 6of the complete genome.    46   1.0    1
AC111144|AC111144.8 Mus musculus chromosome 6, clone RP23-373C23, complete sequence.    44   4.1    1
AC154029|AC154029.4 Mus musculus 6 BAC RP23-26J14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence.    44   4.1    1
BP663205|BP663205.1 Arabidopsis thaliana cDNA clone:RAFL21-47-C10, 3' end.    38   5.5    2
AY653733|AY653733.1 Acanthamoeba polyphaga mimivirus, complete genome.    30   6.2    2
AL390785|AL390785.15 Human DNA sequence from clone RP11-325N9 on chromosome 10.    38   7.9    3
BH994184|BH994184.1 oei25a04.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    32   9.9    2
DN784761|DN784761.1 90920058 Sea Urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PMCSPR2-138D22 5', mRNA sequence.    42   16     1
BM609491|BM609491.1 17000687102146 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449695402 5', mRNA sequence.    42   16     1
BM586532|BM586532.1 17000687317957 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449731812 5', mRNA sequence.    42   16     1
dna update 2005. 5.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001027_141(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch...    34   6.3
protein update 2008.11. 4
PSORT 

 psg: 1.00  gvh: 0.79  alm: 0.35  top: 0.33  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: extracellular, including cell wall
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: Golgi

>> prediction for CHM571 is exc
5' end seq. ID CHM571F
5' end seq. 
>CHM571F.Seq
AAAAAAAAAANCAAAAATTAATTTANTTAAAAAAGAAAAAAAATNTTTAAAAAATATTCA
TATAATAATAAATAAAAANGAAAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTT
TTTTAATTTTATGTTTNGCAAAACCATCTNTTTCAAATNACCCTTTAACAACTTCAACAA
CAACAACAACAGCAACTGCNCTACCAACNACATCGGCAGCATCAACAGCAAAGGTAACAA
CAACNNNNNNNNNN
Length of 5' end seq. 254
3' end seq. ID CHM571Z
3' end seq. 
>CHM571Z.Seq
NNNNNNNNNNAATATCCATACTATCAACTTGGTCAATTATTAAATGGTGNTTCCGATCAG
TATAACACTGGTAATGTAAATTTCAAATCCGTTAGTAAACTTTTTANAGGTTTTCCAACT
ATCGAGTATCAATTATACAATAATTACAAAGCNATCATNTCAATGATGAATGGNACAATC
GATACATNTCAATATGATNTTTTGAGATTGAATTTNTTNTTCCTTCATGATCAATNTTAT
AATAATCCAAATCCAAGTATTGACTNTAGTGAAGTTGCAAACTNTTTNTTTTTAGATNTT
CAAATTTGTATTACCGTTCAAGTGGTTGGTAATTTACCTTGTGTTGGTTTATCNCCATAC
TTGGGTGGTCAAGTTCCAAATGCAGTATGGGTTGAACTTTTAATTCCTTTCTNTGATCTT
CAAGTTTATCCAAATGCTNTTATCAGTAGTATCNCTTTCCAAACTCAAGTACAAGATCNC
CAAGGTGTTTTNTTTATTGGTGATATTTNTGCTGGTAATTTTGTACCNCCATATAAAGTA
CTANAGGATGGTTCAAACGCTTTCAAATTATTATCAAATANT
Length of 3' end seq. 582
Connected seq. ID CHM571P
Connected seq. 
>CHM571P.Seq
AAAAAAAAAANCAAAAATTAATTTANTTAAAAAAGAAAAAAAATNTTTAAAAAATATTCA
TATAATAATAAATAAAAANGAAAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTT
TTTTAATTTTATGTTTNGCAAAACCATCTNTTTCAAATNACCCTTTAACAACTTCAACAA
CAACAACAACAGCAACTGCNCTACCAACNACATCGGCAGCATCAACAGCAAAGGTAACAA
CAAC----------AATATCCATACTATCAACTTGGTCAATTATTAAATGGTGNTTCCGA
TCAGTATAACACTGGTAATGTAAATTTCAAATCCGTTAGTAAACTTTTTANAGGTTTTCC
AACTATCGAGTATCAATTATACAATAATTACAAAGCNATCATNTCAATGATGAATGGNAC
AATCGATACATNTCAATATGATNTTTTGAGATTGAATTTNTTNTTCCTTCATGATCAATN
TTATAATAATCCAAATCCAAGTATTGACTNTAGTGAAGTTGCAAACTNTTTNTTTTTAGA
TNTTCAAATTTGTATTACCGTTCAAGTGGTTGGTAATTTACCTTGTGTTGGTTTATCNCC
ATACTTGGGTGGTCAAGTTCCAAATGCAGTATGGGTTGAACTTTTAATTCCTTTCTNTGA
TCTTCAAGTTTATCCAAATGCTNTTATCAGTAGTATCNCTTTCCAAACTCAAGTACAAGA
TCNCCAAGGTGTTTTNTTTATTGGTGATATTTNTGCTGGTAATTTTGTACCNCCATATAA
AGTACTANAGGATGGTTCAAACGCTTTCAAATTATTATCAAATANT
Length of connected seq. 816
Full length Seq ID -
Full length Seq. -
Length of full length seq. -