>CHM549 (CHM549Q) /CSM/CH/CHM5-C/CHM549Q.Seq.d/
AGTAATAGCGGTAGTGGTAGATACGACGATGATAGAAGTGGTAACTCATCATATTCTAGT
ACCTCTAGAGGTGGCAGTAGTTATGGTAATAGATCGGGAAGTGATAGAGATTATAACCGA
GATGGTGGAAGTTATAATAGGGATTCCTCTAGAGATTATAACAGTAGTAGTGGTAGTGGT
AGTGGTAATGGCAGTAGTAGCTATAATAAATACCCATCATCATCATCATCATCATCCTCA
TCCTCATCAACTTCATCATATGGTCCATCAAAAGGTAAAGATTTCCAAGATTCATGGGGT
AGTTCCAGCACAGGAACAACCAATGGATATAATGGTTCAAGTAACGGATATAATAGTTCA
AGTAATGGATATAATAGTAGTAATAGTAGCTCAAGTTATGGTGCATCAAATAATGGATAC
AATAATAGTAGTGGTAGTAGTAGTAGTGGTAGTAGTGGTAGCAGTAATGGCGGCAGTTAC
AACAATAGTGGTAGTAGTAACTCAAATGGATATAGTAAACCAACATCAAATTATAGTTAT
TCAAATGGATACACTGXXXXXXXXXXGTGATGAAAAAGTTATTGTCTTTGCCGAAACTAG
AAAAGGTGTCGATGATCTTCAACGTGTTTTACAATTTTCAGGTTTCAAATCAATTGGTAT
TCATGGTAATAAATCTCAACCAGAAAGAGATTTTGTTTTATCTCAATTTAAAAATGGTAT
GGTTCCAATTATGATTGCAACAGATGTAGCTTCTCGTGGTTTAGATATCAAGGATATTAA
ATATGTAGTAAACTATGACTTCCCAAACACAATAGAAGTTTATATTCACCGTATTGGTCG
TACTGCTAGAGCTGGAGCATCCGGTGTCAGTTATTCATTATTAACAACAGATAATGCACG
TTTGGCTAACGAATTAATTAAAGTATTAACTGAGGCAAAACAAAAAATACCAATTGAACT
TTCAAATCTTTCCGTTACTCCAAGTACATCTTCAAATACGAAAAAATTTTCGCCATATCC
AACTTATTCAAAGAGATATTAAATTTAATAATAATAATAATAATAATAATAATAATAAAA
ATAACAAAAAACAAAAAGTAGTAGTATAAAAATTTTCATAATATAAATAATATTT

SNSGSGRYDDDRSGNSSYSSTSRGGSSYGNRSGSDRDYNRDGGSYNRDSSRDYNSSSGSG
SGNGSSSYNKYPSSSSSSSSSSSTSSYGPSKGKDFQDSWGSSSTGTTNGYNGSSNGYNSS
SNGYNSSNSSSSYGASNNGYNNSSGSSSSGSSGSSNGGSYNNSGSSNSNGYSKPTSNYSY
SNGYT---

---DEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIA
TDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELI
KVLTEAKQKIPIELSNLSVTPSTSSNTKKFSPYPTYSKRY*i***********k*qktks
ssikifii*iif

Frame A:
SNSGSGRYDDDRSGNSSYSSTSRGGSSYGNRSGSDRDYNRDGGSYNRDSSRDYNSSSGSG
SGNGSSSYNKYPSSSSSSSSSSSTSSYGPSKGKDFQDSWGSSSTGTTNGYNGSSNGYNSS
SNGYNSSNSSSSYGASNNGYNNSSGSSSSGSSGSSNGGSYNNSGSSNSNGYSKPTSNYSY
SNGYT---

---vmkkllslpklekvsmifnvfynfqvsnqlvfmvinlnqkeilfylnlkmvwfql*l
qqm*llvv*isrilnm**tmtsqtq*kfiftvlvvllelehpvsvihy*qqimhvwltn*
lky*lrqnkkyqlnfqifpllqvhlqirknfrhiqliqrdikfnnnnnnnnnnknnkkqk
vvv*kfs*yk*y

Frame B:
viavvvdttmievvthhilvplevavvmvidrevieiitemveviigipleiitvvvvvv
vvmavvaiinthhhhhhhphphqlhhmvhqkvkiskihgvvpaqeqpmdimvqvtdiivq
vmdiivvivaqvmvhqimdtiivvvvvvvvvvvavmaavttivvvvtqmdivnqhqiivi
qmdtl---

---**ksyclcrn*krcr*sstcftifrfqinwysw**istrkrfcfisi*kwygsnydc
nrcsfswfryqgy*icskl*lpkhnrslyspywsyc*swsircqlfiinnr*ctfg*rin
*sin*gktkntn*tfksfryskyifkyekifaisnlfkeilnliiiiiiiiiikitknkk
**yknfhninni

Frame C:
**r*w*irr**kw*liif*yl*rwq*lw**igk**rl*prwwkl**gfl*rl*q**w*w*
w*wq**l**ipiiiiiiililinfiiwsikr*rfprfmg*fqhrnnqwi*wfk*ri**fk
*wi******lklwcik*wiq***w****w**w*q*wrqlqq*w***lkwi**tnikl*lf
kwih---

---DEKVIVFAETRKGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIA
TDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELI
KVLTEAKQKIPIELSNLSVTPSTSSNTKKFSPYPTYSKRY*i***********k*qktks
ssikifii*iif

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM549 (CHM549Q) /CSM/CH/CHM5-C/CHM549Q.Seq.d/                       1088   0.0
CHP763 (CHP763Q) /CSM/CH/CHP7-C/CHP763Q.Seq.d/                        934   0.0
FC-BG12 (FC-BG12Q) /CSM/FC/FC-BG/FC-BG12Q.Seq.d/                      926   0.0
CHL206 (CHL206Q) /CSM/CH/CHL2-A/CHL206Q.Seq.d/                        926   0.0
SSM111 (SSM111Q) /CSM/SS/SSM1-A/SSM111Q.Seq.d/                        878   0.0
CHF611 (CHF611Q) /CSM/CH/CHF6-A/CHF611Q.Seq.d/                        858   0.0
VHL191 (VHL191Q) /CSM/VH/VHL1-D/VHL191Q.Seq.d/                        848   0.0
AHM168 (AHM168Q) /CSM/AH/AHM1-C/AHM168Q.Seq.d/                        666   0.0
CHL887 (CHL887Q) /CSM/CH/CHL8-D/CHL887Q.Seq.d/                        652   0.0
SFI148 (SFI148Q) /CSM/SF/SFI1-B/SFI148Q.Seq.d/                         52   2e-05

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CF227937|CF227937.1 PtaXM0006F4F0412 Poplar cDNA library from mature xylem Populus albax Populus tremula cDNA 5', mRNA sequence.    68   4e-07  1
CX707422|CX707422.1 gmrtDrNS01_24-C_M13R_B07_061.s1 Water stressed 5h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.    58   4e-07  2
CX707618|CX707618.1 gmrtDrNS01_26-C_M13R_C09_075.s1 Water stressed 5h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.    58   4e-07  2
CX707230|CX707230.1 gmrtDrNS01_22-C_M13R_A05_047.s1 Water stressed 5h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.    58   4e-07  2
BI321646|BI321646.1 saf15g11.y3 Gm-c1076 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1076-1078 5' similar to TR:Q9ZS02 Q9ZS02 RNA HELICASE ;, mRNA sequence.    58   4e-07  2
AW705217|AW705217.1 sk43b12.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-5304 5' similar to TR:Q9ZS02 Q9ZS02 RNA HELICASE ;, mRNA sequence.    58   4e-07  2
AP008207|AP008207.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1.    60   2e-05  2
AC132520|AC132520.3 Rattus norvegicus clone CH230-42D1, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    62   2e-05  1
AC103230|AC103230.6 Rattus norvegicus clone CH230-226D16, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    62   2e-05  1
CX704920|CX704920.1 gmrtDrNS01_36-B_M13R_F04_022.s1 Water stressed 5h segment 1 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.    50   9e-05  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54CE0) RecName: Full=Probable ATP-dependent RNA helicase ddx17...   309   1e-82
AM910994_603(AM910994|pid:none) Plasmodium knowlesi strain H chr...   168   3e-40
(Q5QMN3) RecName: Full=DEAD-box ATP-dependent RNA helicase 20;  ...   167   6e-40
AB008265_8(AB008265|pid:none) Arabidopsis thaliana genomic DNA, ...   164   7e-39
(Q8W4R3) RecName: Full=DEAD-box ATP-dependent RNA helicase 30;  ...   164   7e-39
BT041534_1(BT041534|pid:none) Zea mays full-length cDNA clone ZM...   163   9e-39
AJ010470_1(AJ010470|pid:none) Arabidopsis thaliana mRNA for DEAD...   162   2e-38
(Q5KFM6) RecName: Full=ATP-dependent RNA helicase DBP2-A;       ...   160   1e-37
AE017346_128(AE017346|pid:none) Cryptococcus neoformans var. neo...   160   1e-37
AP003244_7(AP003244|pid:none) Oryza sativa Japonica Group genomi...   159   2e-37

 psg: 0.75  gvh: 0.31  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for CHM549 is nuc

>CHM549F.Seq
AGTAATAGCGGTAGTGGTAGATACGACGATGATAGAAGTGGTAACTCATCATATTCTAGT
ACCTCTAGAGGTGGCAGTAGTTATGGTAATAGATCGGGAAGTGATAGAGATTATAACCGA
GATGGTGGAAGTTATAATAGGGATTCCTCTAGAGATTATAACAGTAGTAGTGGTAGTGGT
AGTGGTAATGGCAGTAGTAGCTATAATAAATACCCATCATCATCATCATCATCATCCTCA
TCCTCATCAACTTCATCATATGGTCCATCAAAAGGTAAAGATTTCCAAGATTCATGGGGT
AGTTCCAGCACAGGAACAACCAATGGATATAATGGTTCAAGTAACGGATATAATAGTTCA
AGTAATGGATATAATAGTAGTAATAGTAGCTCAAGTTATGGTGCATCAAATAATGGATAC
AATAATAGTAGTGGTAGTAGTAGTAGTGGTAGTAGTGGTAGCAGTAATGGCGGCAGTTAC
AACAATAGTGGTAGTAGTAACTCAAATGGATATAGTAAACCAACATCAAATTATAGTTAT
TCAAATGGATACACTGNNNNNNNNNN

>CHM549Z.Seq
NNNNNNNNNNGTGATGAAAAAGTTATTGTCTTTGCCGAAACTAGAAAAGGTGTCGATGAT
CTTCAACGTGTTTTACAATTTTCAGGTTTCAAATCAATTGGTATTCATGGTAATAAATCT
CAACCAGAAAGAGATTTTGTTTTATCTCAATTTAAAAATGGTATGGTTCCAATTATGATT
GCAACAGATGTAGCTTCTCGTGGTTTAGATATCAAGGATATTAAATATGTAGTAAACTAT
GACTTCCCAAACACAATAGAAGTTTATATTCACCGTATTGGTCGTACTGCTAGAGCTGGA
GCATCCGGTGTCAGTTATTCATTATTAACAACAGATAATGCACGTTTGGCTAACGAATTA
ATTAAAGTATTAACTGAGGCAAAACAAAAAATACCAATTGAACTTTCAAATCTTTCCGTT
ACTCCAAGTACATCTTCAAATACGAAAAAATTTTCGCCATATCCAACTTATTCAAAGAGA
TATTAAATTTAATAATAATAATAATAATAATAATAATAATAAAAATAACAAAAAACAAAA
AGTAGTAGTATAAAAATTTTCATAATATAAATAATATTT

>CHM549P.Seq
AGTAATAGCGGTAGTGGTAGATACGACGATGATAGAAGTGGTAACTCATCATATTCTAGT
ACCTCTAGAGGTGGCAGTAGTTATGGTAATAGATCGGGAAGTGATAGAGATTATAACCGA
GATGGTGGAAGTTATAATAGGGATTCCTCTAGAGATTATAACAGTAGTAGTGGTAGTGGT
AGTGGTAATGGCAGTAGTAGCTATAATAAATACCCATCATCATCATCATCATCATCCTCA
TCCTCATCAACTTCATCATATGGTCCATCAAAAGGTAAAGATTTCCAAGATTCATGGGGT
AGTTCCAGCACAGGAACAACCAATGGATATAATGGTTCAAGTAACGGATATAATAGTTCA
AGTAATGGATATAATAGTAGTAATAGTAGCTCAAGTTATGGTGCATCAAATAATGGATAC
AATAATAGTAGTGGTAGTAGTAGTAGTGGTAGTAGTGGTAGCAGTAATGGCGGCAGTTAC
AACAATAGTGGTAGTAGTAACTCAAATGGATATAGTAAACCAACATCAAATTATAGTTAT
TCAAATGGATACACTG----------GTGATGAAAAAGTTATTGTCTTTGCCGAAACTAG
AAAAGGTGTCGATGATCTTCAACGTGTTTTACAATTTTCAGGTTTCAAATCAATTGGTAT
TCATGGTAATAAATCTCAACCAGAAAGAGATTTTGTTTTATCTCAATTTAAAAATGGTAT
GGTTCCAATTATGATTGCAACAGATGTAGCTTCTCGTGGTTTAGATATCAAGGATATTAA
ATATGTAGTAAACTATGACTTCCCAAACACAATAGAAGTTTATATTCACCGTATTGGTCG
TACTGCTAGAGCTGGAGCATCCGGTGTCAGTTATTCATTATTAACAACAGATAATGCACG
TTTGGCTAACGAATTAATTAAAGTATTAACTGAGGCAAAACAAAAAATACCAATTGAACT
TTCAAATCTTTCCGTTACTCCAAGTACATCTTCAAATACGAAAAAATTTTCGCCATATCC
AACTTATTCAAAGAGATATTAAATTTAATAATAATAATAATAATAATAATAATAATAAAA
ATAACAAAAAACAAAAAGTAGTAGTATAAAAATTTTCATAATATAAATAATATTT