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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM546
Library CH
(Link to library)
Clone ID CHM546
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15865-1
Original site URL
Representative seq. ID CHM546P
(Link to Original site)
Representative DNA sequence 
>CHM546 (CHM546Q) /CSM/CH/CHM5-B/CHM546Q.Seq.d/
CACTGTTGGCCTACTGGATTCTTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATA
AAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAA
GAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCA
TATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAA
GAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAAT
GCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGT
TTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATAC
AAAGAGAATGAACAAAAATTAATTAAACAAAAACATTAAAAAAAAAAXXXXXXXXXXATT
CATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCAAAT
AAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAG
CAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAAATG
CATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCAATT
TGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATC
CACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTAT
TAGGTTTATTTGCTGGAAATTCTAGAAGGAAAGAAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
tvglldsyiinlflknl*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhph
mple*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslv
s*lwvylvyllgnsmkerntkrmnkn*LNKNIKKK---

---IHYIINLFLKNL*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmp
le*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*
lwvy*vylleilegkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgflyy*fvfkkfikikiinfk*ikr*kkmtdnwdkeklakkaaeglknakntass
yasginaskdqlnsnfknikenissnlnnakhtieenvhnaqrtgyppkvpapgsnkfig
flalgvfglfawkfyegkkykeneqklikqkh*kk---

---IHYIINLFLKNL*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmp
le*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*
lwvy*vylleilegkk

Frame B:
tvglldsyiinlflknl*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhph
mple*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslv
s*lwvylvyllgnsmkerntkrmnkn*LNKNIKKK---

---fiillicf*kiyknkny*fqin*kieend**lg*rktc*kssrrfkecqeycilicl
wnkcikrsikfkfqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwfps
fgcirficwkf*kern

Frame C:
llaywilillicf*kiyknkny*fqin*kieend**lg*rktc*kssrrfkecqeycili
clwnkcikrsikfkfqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwf
psfgciwficleil*rkeiqre*tkin*tktlkkk---

---slyy*fvfkkfikikiinfk*ikr*kkmtdnwdkeklakkaaeglknakntassyas
ginaskdqlnsnfknikenissnlnnakhtieenvhnaqrtgyppkvpapgsnkfigfla
lgvlglfagnsrrkei
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM768 (SSM768Q) /CSM/SS/SSM7-C/SSM768Q.Seq.d/                        731   0.0
SSK829 (SSK829Q) /CSM/SS/SSK8-B/SSK829Q.Seq.d/                        731   0.0
SSJ861 (SSJ861Q) /CSM/SS/SSJ8-C/SSJ861Q.Seq.d/                        731   0.0
SSJ338 (SSJ338Q) /CSM/SS/SSJ3-B/SSJ338Q.Seq.d/                        731   0.0
SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/                        731   0.0
SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/                        731   0.0
SSH508 (SSH508Q) /CSM/SS/SSH5-A/SSH508Q.Seq.d/                        731   0.0
SSG891 (SSG891Q) /CSM/SS/SSG8-D/SSG891Q.Seq.d/                        731   0.0
SSG837 (SSG837Q) /CSM/SS/SSG8-B/SSG837Q.Seq.d/                        731   0.0
SSF657 (SSF657Q) /CSM/SS/SSF6-C/SSF657Q.Seq.d/                        731   0.0
own update 2004. 7.21
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          34   2e-05  24
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   2e-04  18
AR300198|AR300198.1 Sequence 1 from patent US 6537773.             36   5e-04  16
BD439871|BD439871.1 Nucleotide Sequence of the Mycoplasma Genitalium Genome , Fragments Thereof, and Uses Thereof.    36   5e-04  16
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           32   0.002  23
CP000025|CP000025.1 Campylobacter jejuni RM1221, complete genome.    32   0.003  27
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    32   0.003  11
CP000046|CP000046.1 Staphylococcus aureus subsp. aureus COL, complete genome.    34   0.004  32
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     38   0.004  15
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             38   0.004  15
dna update 2005. 5.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014188_347(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.1
(Q80WK7) RecName: Full=Equilibrative nucleoside transporter 3; A...    35   2.4
BC078678_1(BC078678|pid:none) Rattus norvegicus solute carrier f...    35   2.4
AL844507_56(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    35   3.1
AE017308_577(AE017308|pid:none) Mycoplasma mobile 163K complete ...    35   3.1
protein update 2009. 4. 8
PSORT 

 psg: 0.93  gvh: 0.27  alm: 0.30  top: 0.57  tms: 0.07  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.24  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHM546 is cyt
5' end seq. ID CHM546F
5' end seq. 
>CHM546F.Seq
CACTGTTGGCCTACTGGATTCTTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATA
AAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAA
GAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCA
TATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAA
GAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAAT
GCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGT
TTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATAC
AAAGAGAATGAACAAAAATTAATTAAACAAAAACATTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 477
3' end seq. ID CHM546Z
3' end seq. 
>CHM546Z.Seq
NNNNNNNNNNATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATT
ATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAA
CTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCC
TCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAAC
ATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAA
AGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTA
GCTTTGGGTGTATTAGGTTTATTTGCTGGAAATTCTAGAAGGAAAGAAATA
Length of 3' end seq. 411
Connected seq. ID CHM546P
Connected seq. 
>CHM546P.Seq
CACTGTTGGCCTACTGGATTCTTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATA
AAAATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAA
GAAAAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCA
TATGCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAA
GAGAACATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAAT
GCTCAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGT
TTCCTAGCTTTGGGTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATAC
AAAGAGAATGAACAAAAATTAATTAAACAAAAACATTAAAAAAAAAA----------ATT
CATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCAAAT
AAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAG
CAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAAATG
CATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCAATT
TGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATC
CACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTAT
TAGGTTTATTTGCTGGAAATTCTAGAAGGAAAGAAATA
Length of connected seq. 868
Full length Seq ID -
Full length Seq. -
Length of full length seq. -