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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM508
Library CH
(Link to library)
Clone ID CHM508
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHM508 (CHM508Q) /CSM/CH/CHM5-A/CHM508Q.Seq.d/
XXXXXXXXXXGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGA
AGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGA
AGGAGGTATGCCACAAGGTGNTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAG
TTCCAACACAACAAAGTAG
sequence update 2002. 9.10
Translated Amino Acid sequence 
---LKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGXGMPGGMSNDSPKSS
NTTK*
Translated Amino Acid sequence (All Frames) 
Frame A:
---ysng*nqikpqkrmnmkir*kp*kqlsiqs*vnsikkevchkvxvcqvvcqmihqrv
ptqqs


Frame B:
---tqmvriksnrrkg*i*r*deslrsscqsnhe*tlsrrryatrxwyarwyvk*ftkef
qhnkv


Frame C:
---LKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGXGMPGGMSNDSPKSS
NTTK*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM508 (CHM508Q) /CSM/CH/CHM5-A/CHM508Q.Seq.d/                        369   e-101
CHR296 (CHR296Q) /CSM/CH/CHR2-D/CHR296Q.Seq.d/                        353   6e-97
VHI246 (VHI246Q) /CSM/VH/VHI2-B/VHI246Q.Seq.d/                        341   2e-93
CHJ874 (CHJ874Q) /CSM/CH/CHJ8-D/CHJ874Q.Seq.d/                        339   9e-93
VSH706 (VSH706Q) /CSM/VS/VSH7-A/VSH706Q.Seq.d/                        339   9e-93
VSH453 (VSH453Q) /CSM/VS/VSH4-C/VSH453Q.Seq.d/                        339   9e-93
VSF403 (VSF403Q) /CSM/VS/VSF4-A/VSF403Q.Seq.d/                        339   9e-93
VSA155 (VSA155Q) /CSM/VS/VSA1-C/VSA155Q.Seq.d/                        339   9e-93
VHQ260 (VHQ260Q) /CSM/VH/VHQ2-C/VHQ260Q.Seq.d/                        339   9e-93
VHQ240 (VHQ240Q) /CSM/VH/VHQ2-B/VHQ240Q.Seq.d/                        339   9e-93
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).   339   1e-89  1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.   339   1e-89  1
AU281126|AU281126.1 Molgula tectiformis mRNA, clone:MT17A2E07T, 3' end.    56   2e-05  2
AJ310880|AJ310880.1 Cryptosporidium baileyi partial hsp70 gene for heat shock protein  70.    44   3e-05  2
AF221539|AF221539.1 Cryptosporidium baileyi heat shock protein 70 (HSP70) gene, partial cds.    44   3e-05  2
AU282860|AU282860.1 Molgula tectiformis mRNA, clone:MT06B2C04T, 3' end.    56   3e-05  2
AY954895|AY954895.1 Cryptosporidium baileyi strain beijingcb heat shock protein 70-like gene, partial sequence.    44   3e-05  2
AC141650|AC141650.6 Rattus norvegicus clone CH230-368F22, WORKING DRAFT SEQUENCE, 37 unordered pieces.    44   1e-04  3
BW552349|BW552349.1 Ciona savignyi cDNA, clone:csga072e03, 3'end, single read.    40   3e-04  3
BW548976|BW548976.1 Ciona savignyi cDNA, clone:csga037j03, 3'end, single read.    40   5e-04  3
dna update 2005. 5.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...    90   3e-17
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...    90   3e-17
DQ675540_1(DQ675540|pid:none) Diaphorina citri clone WHDc0146 pu...    59   5e-08
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;            58   9e-08
EF655662_1(EF655662|pid:none) Trichinella nativa heat shock prot...    57   3e-07
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...    56   3e-07
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon...    56   3e-07
(P09446) RecName: Full=Heat shock 70 kDa protein A;  &T21394(T21...    56   3e-07
AY035123_1(AY035123|pid:none) Arabidopsis thaliana putative dnaK...    56   3e-07
X77199_1(X77199|pid:none) A.thaliana hsc70-1 gene.                     56   3e-07
protein update 2009. 5.20
PSORT 

 psg: 0.75  gvh: 0.29  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHM508 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHM508Z
3' end seq. 
>CHM508Z.Seq
NNNNNNNNNNGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAGGATGAATATGA
AGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAACTCTATCAAGA
AGGAGGTATGCCACAAGGTGNTGGTATGCCAGGTGGTATGTCAAATGATTCACCAAAGAG
TTCCAACACAACAAAGTAG
Length of 3' end seq. 199
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -