>CHM504 (CHM504Q) /CSM/CH/CHM5-A/CHM504Q.Seq.d/
XXXXXXXXXXTTNCAAAAGTATCTTCATATATTAAAAGTGAATTAGCAACTTNCTNGTAT
CAGATTATAACCTTTTAATTCAAATGAGCCAATATAACATCATCAAAANACCAAGATATG
ACAAATGTAACTAAAGGTTTATCNGTTTTTANGGGTGATTTAAAGATCAAATATGAAGAN
TTTCANCCATATTTCGATAAAATTAATGAACTTGATAAAAATGTAACCGATTTAGAGAAA
ACAGTACAATTATTAGATGAATATACTAAAAGATTGGAACAAAAAGTTAAAAATATTGAT
AAAAGTTCTTTACTTCCAACTAAACAAATTCAACCACCACAACCAATACCACAACAACAA
CCAGCACAACCAGCACAACCAACACAACCAACACAACCAGCACAACAACCATCTCAAGTA
TCAACAGAAACTAAGCCTCAAGAAAATATAGAAAATAAATAAAAA

---xkvssyikselatxxyqiitf*fk*ANITSSKXQDMTNVTKGLSVFXGDLKIKYEXF
XPYFDKINELDKNVTDLEKTVQLLDEYTKRLEQKVKNIDKSSLLPTKQIQPPQPIPQQQP
AQPAQPTQPTQPAQQPSQVSTETKPQENIENK*k

Frame A:
---xksifiy*k*isnxlvsdynlliqmsqyniikxprydkcn*rfixfxg*fkdqi*rx
sxifr*n**t**kcnrfrenstiir*iy*kigtks*ky**kfftsn*tnsttttnttttt
sttsttnttnttstttissinrn*asrkyrk*ik


Frame B:
---xkvssyikselatxxyqiitf*fk*ANITSSKXQDMTNVTKGLSVFXGDLKIKYEXF
XPYFDKINELDKNVTDLEKTVQLLDEYTKRLEQKVKNIDKSSLLPTKQIQPPQPIPQQQP
AQPAQPTQPTQPAQQPSQVSTETKPQENIENK*k


Frame C:
---qkylhilkvn*qlxxirl*pfnsnepi*hhqxtki*qm*lkvyxflxvi*rsnmkxf
xhisiklmnlikm*pi*rkqyny*mnilkdwnkklkilikvlyfqlnkfnhhnqyhnnnq
hnqhnqhnqhnqhnnhlkyqqklslkki*kink

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM504 (CHM504Q) /CSM/CH/CHM5-A/CHM504Q.Seq.d/                        567   e-161
SSI512 (SSI512Q) /CSM/SS/SSI5-A/SSI512Q.Seq.d/                         38   0.11
AHA492 (AHA492Q) /CSM/AH/AHA4-D/AHA492Q.Seq.d/                         38   0.11
VSE441 (VSE441Q) /CSM/VS/VSE4-B/VSE441Q.Seq.d/                         36   0.45
VSC321 (VSC321Q) /CSM/VS/VSC3-A/VSC321Q.Seq.d/                         36   0.45
SSG584 (SSG584Q) /CSM/SS/SSG5-D/SSG584Q.Seq.d/                         36   0.45
SFC702 (SFC702Q) /CSM/SF/SFC7-A/SFC702Q.Seq.d/                         36   0.45
CHF735 (CHF735Q) /CSM/CH/CHF7-B/CHF735Q.Seq.d/                         36   0.45
AFJ641 (AFJ641Q) /CSM/AF/AFJ6-B/AFJ641Q.Seq.d/                         36   0.45
VSK289 (VSK289Q) /CSM/VS/VSK2-D/VSK289Q.Seq.d/                         34   1.8

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    34   3e-05  23
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   2e-04  17
AC149629|AC149629.1 Dasypus novemcinctus clone VMRC5-517D14, WORKING DRAFT SEQUENCE, 6 unordered pieces.    56   6e-04  1
AC149628|AC149628.1 Dasypus novemcinctus clone VMRC5-138M11, WORKING DRAFT SEQUENCE, 7 unordered pieces.    56   6e-04  1
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    32   8e-04  16
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   0.002  11
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    34   0.002  11
AC006790|AC006790.2 Caenorhabditis elegans cosmid Y49F6B, complete sequence.    42   0.004  5
M10129|M10129.1 Plasmodium falciparum (isolate FC27) S-antigen gene.    38   0.009  4
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   0.011  14

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Y67) RecName: Full=Probable biogenesis of lysosome-related o...   179   3e-44
(A7RZS0) RecName: Full=Probable biogenesis of lysosome-related o...    58   9e-08
BT047140_1(BT047140|pid:none) Salmo salar clone ssal-rgb2-617-05...    58   9e-08
BX897740_1(BX897740|pid:none) Zebrafish DNA sequence from clone ...    57   2e-07
(Q66KB9) RecName: Full=Biogenesis of lysosome-related organelles...    57   3e-07
BT075414_1(BT075414|pid:none) Osmerus mordax clone omor-rgc-506-...    56   3e-07
(Q6QNY1) RecName: Full=Biogenesis of lysosome-related organelles...    54   2e-06
(Q4R7C8) Biogenesis of lysosome-related organelles complex 1 sub...    54   2e-06
(Q32WR5) RecName: Full=Biogenesis of lysosome-related organelles...    54   2e-06
(Q9CWG9) RecName: Full=Biogenesis of lysosome-related organelles...    54   2e-06

 psg: 0.74  gvh: 0.20  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for CHM504 is nuc

>CHM504Z.Seq
NNNNNNNNNNTTNCAAAAGTATCTTCATATATTAAAAGTGAATTAGCAACTTNCTNGTAT
CAGATTATAACCTTTTAATTCAAATGAGCCAATATAACATCATCAAAANACCAAGATATG
ACAAATGTAACTAAAGGTTTATCNGTTTTTANGGGTGATTTAAAGATCAAATATGAAGAN
TTTCANCCATATTTCGATAAAATTAATGAACTTGATAAAAATGTAACCGATTTAGAGAAA
ACAGTACAATTATTAGATGAATATACTAAAAGATTGGAACAAAAAGTTAAAAATATTGAT
AAAAGTTCTTTACTTCCAACTAAACAAATTCAACCACCACAACCAATACCACAACAACAA
CCAGCACAACCAGCACAACCAACACAACCAACACAACCAGCACAACAACCATCTCAAGTA
TCAACAGAAACTAAGCCTCAAGAAAATATAGAAAATAAATAAAAA