CHM488
Library CH
(Link to library)
Clone ID CHM488
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11462-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHM488 (CHM488Q) /CSM/CH/CHM4-D/CHM488Q.Seq.d/
XXXXXXXXXXACCAGGTTANANGATCATTNTTTTATGNGNTTTAGGNTTCAANGAATTCA
TNTCAATCATNTTTTCNCCATTATTATTGTTATTAACAATCCTATTGGGNGGNGNTGGNT
TNGTTTTATTCAAANTAGGNTTGGNTGGTCCNTTCATANATTATAGTAGTCAAATTTTAG
TTCNTTTNATAAGCAAAGTTAAANANATAGTTTTACATGTTGAACAATTACAAGAACAAA
ATCATAATAATAATAATAATAATAATAATACTCCNAAACAAAAAANAGAATNAATTAATT
GAATAAAAAAAAAAAATATAAAAAAGTATAATAATAATAATCAAATCAATTTTTGTTAAA
TAATAAAAAAATAAAATTTAAAAAATATAAAATAAAATAAATAAAATAAAATTATATA
sequence update 2002. 9.10
Translated Amino Acid sequence
---PGXXIIXLXXLGFXEFXSIXFSPLLLLLTILLGGXGXVLFKXGLXGPFIXYSSQILV
XXISKVKXIVLHVEQLQEQNHNNNNNNNNTPKQKXEXIN*ikkknikkynnnnqinfc*i
ikk*nlknik*nk*nkii


Translated Amino Acid sequence (All Frames)
Frame A:
---PGXXIIXLXXLGFXEFXSIXFSPLLLLLTILLGGXGXVLFKXGLXGPFIXYSSQILV
XXISKVKXIVLHVEQLQEQNHNNNNNNNNTPKQKXEXIN*ikkknikkynnnnqinfc*i
ikk*nlknik*nk*nkii


Frame B:
---qvxxsxfyxx*xsxnsxqsxfxhyycy*qsywxxxxxfysx*xwxvxsxiivvkf*f
xx*aklxx*fymlnnyknkiiiiiiiiiilxnkkxnxlie*kkki*ksiiiiiksifvk*
*knki*ki*nkinkikly


Frame C:
---rlxdhxfmxfrxqxihxnhxfxiiivinnpigxxwxxfiqxrxgwsxhxl**snfss
fxkqs*xxsftc*titrtks********ysxtkxrxn*lnkkkkykkv****snqfllnn
kkikfkkykik*ik*nyi


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHM488 (CHM488Q) /CSM/CH/CHM4-D/CHM488Q.Seq.d/ 289 2e-77
SHJ661 (SHJ661Q) /CSM/SH/SHJ6-C/SHJ661Q.Seq.d/ 283 1e-75
VFK821 (VFK821Q) /CSM/VF/VFK8-A/VFK821Q.Seq.d/ 281 4e-75
CHH532 (CHH532Q) /CSM/CH/CHH5-B/CHH532Q.Seq.d/ 281 4e-75
AHO432 (AHO432Q) /CSM/AH/AHO4-B/AHO432Q.Seq.d/ 281 4e-75
AHL837 (AHL837Q) /CSM/AH/AHL8-B/AHL837Q.Seq.d/ 281 4e-75
CHJ856 (CHJ856Q) /CSM/CH/CHJ8-C/CHJ856Q.Seq.d/ 254 9e-67
CHM758 (CHM758Q) /CSM/CH/CHM7-C/CHM758Q.Seq.d/ 204 8e-52
CHK234 (CHK234Q) /CSM/CH/CHK2-B/CHK234Q.Seq.d/ 155 6e-37
CHQ885 (CHQ885Q) /CSM/CH/CHQ8-D/CHQ885Q.Seq.d/ 113 2e-24

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC113537|AC113537.4 Mus musculus clone RP23-88P17, WORKING DRAFT SEQUENCE, 5 unordered pieces. 46 0.16 2
AC116137|AC116137.10 Mus musculus chromosome 19 clone RP23-122L1 map 19, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces. 46 0.51 1
AC132300|AC132300.1 Mus musculus chromosome UNK clone RP24-276O22, WORKING DRAFT SEQUENCE, 15 unordered pieces. 46 0.51 1
CR848711|CR848711.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-226K23. 44 2.0 1
AL355885|AL355885.4 Human chromosome 14 DNA sequence BAC R-434O22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human). 44 2.0 1
CW747147|CW747147.1 MARC_927097 CHORI-240-504B10 Bos taurus genomic clone 1M17, genomic survey sequence. 34 2.4 2
CW746785|CW746785.1 MARC_926647 CHORI-240-504B10 Bos taurus genomic clone 1K13, genomic survey sequence. 34 2.5 2
CW746801|CW746801.1 MARC_926668 CHORI-240-504B10 Bos taurus genomic clone 1P14, genomic survey sequence. 34 2.7 2
CR388027|CR388027.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-181O16. 40 2.7 3
U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 34 3.0 2
dna update 2005. 5. 8
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 153,451,909
protein update 2009. 5.20
PSORT

psg: 0.89 gvh: 0.87 alm: 0.41 top: 0.60 tms: 0.00 mit: 0.08 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: extracellular, including cell wall
8.0 %: mitochondrial
8.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vacuolar

>> prediction for CHM488 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHM488Z
3' end seq.
>CHM488Z.Seq
NNNNNNNNNNACCAGGTTANANGATCATTNTTTTATGNGNTTTAGGNTTCAANGAATTCA
TNTCAATCATNTTTTCNCCATTATTATTGTTATTAACAATCCTATTGGGNGGNGNTGGNT
TNGTTTTATTCAAANTAGGNTTGGNTGGTCCNTTCATANATTATAGTAGTCAAATTTTAG
TTCNTTTNATAAGCAAAGTTAAANANATAGTTTTACATGTTGAACAATTACAAGAACAAA
ATCATAATAATAATAATAATAATAATAATACTCCNAAACAAAAAANAGAATNAATTAATT
GAATAAAAAAAAAAAATATAAAAAAGTATAATAATAATAATCAAATCAATTTTTGTTAAA
TAATAAAAAAATAAAATTTAAAAAATATAAAATAAAATAAATAAAATAAAATTATATA
Length of 3' end seq. 418
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -