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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM483
Library CH
(Link to library)
Clone ID CHM483
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16509-1|Contig-U16524-1
Original site URL
Representative seq. ID CHM483P
(Link to Original site)
Representative DNA sequence 
>CHM483 (CHM483Q) /CSM/CH/CHM4-D/CHM483Q.Seq.d/
ATTCAACTCAGCTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAA
TAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAATAA
TTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAAXXXXXXXXX
XAAGTTCAAGGAAATAATGCAGTATGTGTTCCACAACAATCATCAACCAGTGGTGGTCAT
CAAAATGATCCATGTGATACCGTTCAATGTCCATATGGTTACAGTTGTGAATCTAGAGAT
GGCTTTGAAGCTAAATGTACTAGAGATGAAGATGAACCAACTCATAGACCAACTCATAGA
CCAAAACCACCACACGACAGTGATAAATACCTCTGTGATAATGTCCACTGCCCAAGAGGA
TACAAATGTAATGCTAAAAATGGTGTTGCCAAATGTATTGCCGGTTATGAAATTCCAAGA
GTATGTCGTAACATCCAATGTCCAACCGGTTACAGATGTGAAGATCACAACCGTAATCCA
ATCTGTGTTTTAGAAGAAAGAGAGAATCCAGATAATTGTTTAACTTGTAATGATGTTAAC
TGTGAAGCCTCTGGTTTAGTTTGTGTTATGACTCGTGCTAGATGTAAGGTCGGTGCTGCT
AAATGTTGTGATGTTCATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
stqliiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK---

---VQGNNAVCVPQQSSTSGGHQNDPCDTVQCPYGYSCESRDGFEAKCTRDEDEPTHRPT
HRPKPPHDSDKYLCDNVHCPRGYKCNAKNGVAKCIAGYEIPRVCRNIQCPTGYRCEDHNR
NPICVLEERENPDNCLTCNDVNCEASGLVCVMTRARCKVGAAKCCDVH
Translated Amino Acid sequence (All Frames) 
Frame A:
iqls*****k**q**giiik**ysynl*ll**nyvyiyk*lllslflkink*iikkk---

---kfkeimqyvfhnnhqpvvvikmihvipfnvhmvtvvnlemalklnvlemkmnqlidq
lidqnhhttvintsvimstaqedtnvmlkmvlpnvlpvmkfqeyvvtsnvqpvtdvkitt
viqsvf*kkeriqiiv*lvmmltvkplv*fvl*lvldvrsvllnvvmfi

Frame B:
fnsannnnknnnnnkel*snnniaiiynyyskitytyinnyyyhcf*k*ink**kk---

---ssrk*csmcsttiinqwwssk*sm*yrsmsiwlql*i*rwl*s*my*r*r*tns*tn
s*tktttrq**ipl**cplpkriqm*c*kwccqmycrl*nsksms*hpmsnrlqm*rsqp
*snlcfrrkresr*lfnl**c*l*slwfslcydsc*m*grcc*ml*cs*

Frame C:
stqliiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK---

---VQGNNAVCVPQQSSTSGGHQNDPCDTVQCPYGYSCESRDGFEAKCTRDEDEPTHRPT
HRPKPPHDSDKYLCDNVHCPRGYKCNAKNGVAKCIAGYEIPRVCRNIQCPTGYRCEDHNR
NPICVLEERENPDNCLTCNDVNCEASGLVCVMTRARCKVGAAKCCDVH
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM483 (CHM483Q) /CSM/CH/CHM4-D/CHM483Q.Seq.d/                        989   0.0
SLA817 (SLA817Q) /CSM/SL/SLA8-A/SLA817Q.Seq.d/                        983   0.0
SFC210 (SFC210Q) /CSM/SF/SFC2-A/SFC210Q.Seq.d/                        983   0.0
AFJ618 (AFJ618Q) /CSM/AF/AFJ6-A/AFJ618Q.Seq.d/                        983   0.0
AFE366 (AFE366Q) /CSM/AF/AFE3-C/AFE366Q.Seq.d/                        954   0.0
SLB201 (SLB201Q) /CSM/SL/SLB2-A/SLB201Q.Seq.d/                        908   0.0
CFB174 (CFB174Q) /CSM/CF/CFB1-D/CFB174Q.Seq.d/                        852   0.0
CFE755 (CFE755Q) /CSM/CF/CFE7-C/CFE755Q.Seq.d/                        846   0.0
SFF582 (SFF582Q) /CSM/SF/SFF5-D/SFF582Q.Seq.d/                        817   0.0
CFC581 (CFC581Q) /CSM/CF/CFC5-D/CFC581Q.Seq.d/                        706   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96.   983   0.0    1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   983   0.0    1
S72639|S72639.1 PspB=prespore-specific gene {5' region} [Dictyostelium discoideum, Genomic, 1918 nt].    56   9e-04  1
AF066071|AF066071.1 Dictyostelium discoideum SP85 (pspB) gene, complete cds.    56   9e-04  1
AZ288031|AZ288031.1 RPCI-23-102J7.TV RPCI-23 Mus musculus genomic clone RPCI-23-102J7, DNA sequence.    48   0.21   1
AC096736|AC096736.3 Homo sapiens BAC clone RP11-171N4 from 4, complete sequence.    46   0.84   1
AC124388|AC124388.4 Mus musculus BAC clone RP24-426O7 from chromosome 13, complete sequence.    44   3.3    1
AC098212|AC098212.6 Rattus norvegicus clone CH230-14L9, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    44   3.3    1
AC094180|AC094180.6 Rattus norvegicus clone CH230-2P22, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44   3.3    1
AC159286|AC159286.1 Mus musculus chromosome 14 clone RP23-314E22, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44   3.3    1
dna update 2005. 5. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...   335   7e-91
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...   335   7e-91
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    93   6e-18
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    83   8e-15
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        74   4e-12
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    74   4e-12
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    73   6e-12
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    65   2e-09
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    61   3e-08
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    59   1e-07
protein update 2009. 4. 8
PSORT 

 psg: 0.76  gvh: 0.48  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHM483 is cyt
5' end seq. ID CHM483F
5' end seq. 
>CHM483F.Seq
ATTCAACTCAGCTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAA
TAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAATAA
TTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 181
3' end seq. ID CHM483Z
3' end seq. 
>CHM483Z.Seq
NNNNNNNNNNAAGTTCAAGGAAATAATGCAGTATGTGTTCCACAACAATCATCAACCAGT
GGTGGTCATCAAAATGATCCATGTGATACCGTTCAATGTCCATATGGTTACAGTTGTGAA
TCTAGAGATGGCTTTGAAGCTAAATGTACTAGAGATGAAGATGAACCAACTCATAGACCA
ACTCATAGACCAAAACCACCACACGACAGTGATAAATACCTCTGTGATAATGTCCACTGC
CCAAGAGGATACAAATGTAATGCTAAAAATGGTGTTGCCAAATGTATTGCCGGTTATGAA
ATTCCAAGAGTATGTCGTAACATCCAATGTCCAACCGGTTACAGATGTGAAGATCACAAC
CGTAATCCAATCTGTGTTTTAGAAGAAAGAGAGAATCCAGATAATTGTTTAACTTGTAAT
GATGTTAACTGTGAAGCCTCTGGTTTAGTTTGTGTTATGACTCGTGCTAGATGTAAGGTC
GGTGCTGCTAAATGTTGTGATGTTCATAA
Length of 3' end seq. 509
Connected seq. ID CHM483P
Connected seq. 
>CHM483P.Seq
ATTCAACTCAGCTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAA
TAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAATAA
TTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAA---------
-AAGTTCAAGGAAATAATGCAGTATGTGTTCCACAACAATCATCAACCAGTGGTGGTCAT
CAAAATGATCCATGTGATACCGTTCAATGTCCATATGGTTACAGTTGTGAATCTAGAGAT
GGCTTTGAAGCTAAATGTACTAGAGATGAAGATGAACCAACTCATAGACCAACTCATAGA
CCAAAACCACCACACGACAGTGATAAATACCTCTGTGATAATGTCCACTGCCCAAGAGGA
TACAAATGTAATGCTAAAAATGGTGTTGCCAAATGTATTGCCGGTTATGAAATTCCAAGA
GTATGTCGTAACATCCAATGTCCAACCGGTTACAGATGTGAAGATCACAACCGTAATCCA
ATCTGTGTTTTAGAAGAAAGAGAGAATCCAGATAATTGTTTAACTTGTAATGATGTTAAC
TGTGAAGCCTCTGGTTTAGTTTGTGTTATGACTCGTGCTAGATGTAAGGTCGGTGCTGCT
AAATGTTGTGATGTTCATAA
Length of connected seq. 670
Full length Seq ID -
Full length Seq. -
Length of full length seq. -