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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM455
Library CH
(Link to library)
Clone ID CHM455
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15303-1|Contig-U15685-1
Original site URL
Representative seq. ID CHM455P
(Link to Original site)
Representative DNA sequence 
>CHM455 (CHM455Q) /CSM/CH/CHM4-C/CHM455Q.Seq.d/
TATTCTTCCANGAGAATCCAAATTTGATCGAAGGTGAANGTCATGAACATAGCGCACGTA
NTCCACTGCTTGCAGAGGATCAACACGTTTCATAAGTTGCCAAACAANGTGTTAAATTAT
GTTTCATCACTGGTGTTATGAATACAGACAAGATGCCACAATTCCAACGTTCACTTTGGA
GAACCACCCGTGGTAACAATTATGTCAAGGATGCACGTATCGAAGAGGAAATCATTGATC
CACAAACTGGCGAGGAAACTGCCAAGACTGTATTCATTGTTTTCTTCCAAGGTGAGAGAT
TACAACAAAAAATTAAAAAGATTTGTGAATCATTTGGTGCCAACATCTACGATTGTCCAG
ATAATTCATTCGAACGTTCAAATCTTTTACAAAAAGTTACTGTTCGTATCACTGATCTCT
ATGAAGTTTTACAACGTTCAAAGGATCACAAGANACAAACTTTANCAGGTACCGTACCAA
GACTTTACTCATGGAXXXXXXXXXXCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTC
TTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTC
CACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAA
GCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAA
GTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGT
TTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTC
ATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTA
GGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTT
AGACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATT
CCATACAGTGCCACTCGTATTCTTTCGGTTCTGAAGATGATGAATAAATCATTAACAACT
AAATAAATAAATAAAAAAAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ffxenpnliegexhehsarxpllaedqhvs*VAKQXVKLCFITGVMNTDKMPQFQRSLWR
TTRGNNYVKDARIEEEIIDPQTGEETAKTVFIVFFQGERLQQKIKKICESFGANIYDCPD
NSFERSNLLQKVTVRITDLYEVLQRSKDHKXQTLXGTVPRLYSW---

---GQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGH
HGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVER
GNPFLAFVGFGAWLGASVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATR
ILSVLKMMNKSLTTK*inkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
yssxriqi*skvxvmniahvxhclqrintfhklpnxvlnyvsslvl*iqtrchnsnvhfg
eppvvtimsrmhvskrkslihklarklprlyslfsskvrdynkklkrfvnhlvptstivq
iihsnvqifykkllfvslismkfynvqritrxklxqvpyqdfthg---

---lvkvlfkplsyswlsfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlv
itvknlkwvkslfiksfipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksn
vvihswlslvlvlg*vplllyfylwnpfllsctlldfig*nskinsilvmvldsfhtvpl
vffrf*r**inh*qlnk*ikkk

Frame B:
ilpxeskfdrr*xs*t*rtxstacrgstrfiscqtxc*imfhhwcyeyrqdatiptftle
nhpw*qlcqgctyrrgnh*stnwrgncqdcihcflpr*eittkn*kdl*iiwcqhlrlsr
*firtfksftksycsyh*sl*sfttfkgsqxtnfxryrtktllm---

---wsrccsnrslilgshfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhws
sr*ri*ng*slcssshsyhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrt
w*silgfrwfwclvrclccctftygipfcflars*tslgripk*ilyw*wc*ihsiqchs
ysfgsedde*iinn*ink*kkk

Frame C:
ffxenpnliegexhehsarxpllaedqhvs*VAKQXVKLCFITGVMNTDKMPQFQRSLWR
TTRGNNYVKDARIEEEIIDPQTGEETAKTVFIVFFQGERLQQKIKKICESFGANIYDCPD
NSFERSNLLQKVTVRITDLYEVLQRSKDHKXQTLXGTVPRLYSW---

---GQGAVQTALLFLALISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGH
HGEEFEMGEVFVHQVIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVER
GNPFLAFVGFGAWLGASVAVLLLMESLSAFLHALRLHWVEFQNKFYIGDGVRFIPYSATR
ILSVLKMMNKSLTTK*inkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM455 (CHM455Q) /CSM/CH/CHM4-C/CHM455Q.Seq.d/                       1461   0.0
CHO859 (CHO859Q) /CSM/CH/CHO8-C/CHO859Q.Seq.d/                       1158   0.0
SHE806 (SHE806Q) /CSM/SH/SHE8-A/SHE806Q.Seq.d/                       1142   0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/                       1122   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                       1118   0.0
SHE135 (SHE135Q) /CSM/SH/SHE1-B/SHE135Q.Seq.d/                       1116   0.0
AHK216 (AHK216Q) /CSM/AH/AHK2-A/AHK216Q.Seq.d/                       1116   0.0
SHL126 (SHL126Q) /CSM/SH/SHL1-B/SHL126Q.Seq.d/                       1106   0.0
CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/                       1106   0.0
VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                       1100   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.  1072   0.0    3
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   2e-13  2
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   1e-10  1
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   1e-10  1
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   1e-08  3
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   2e-08  3
CO114094|CO114094.1 GR__Eb015A17.r GR__Eb Gossypium raimondii cDNA clone GR__Eb015A17 3', mRNA sequence.    72   2e-08  1
BQ408812|BQ408812.1 GA__Ed0012A07r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0012A07r, mRNA sequence.    72   2e-08  1
CO127208|CO127208.1 GR__Eb11K12.r GR__Eb Gossypium raimondii cDNA clone GR__Eb11K12 3', mRNA sequence.    72   2e-08  1
CO114922|CO114922.1 GR__Eb016F15.r GR__Eb Gossypium raimondii cDNA clone GR__Eb016F15 3', mRNA sequence.    72   2e-08  1
dna update 2005. 5. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   362   9e-99
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   362   9e-99
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   203   7e-51
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   196   1e-48
AK221976_1(AK221976|pid:none) Arabidopsis thaliana mRNA for hypo...   196   1e-48
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   196   1e-48
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   196   1e-48
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   195   2e-48
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   189   1e-46
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   189   2e-46
protein update 2009. 4. 8
PSORT 

 psg: 0.96  gvh: 0.34  alm: 0.18  top: 0.53  tms: 0.20  mit: 0.32  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for CHM455 is pla
5' end seq. ID CHM455F
5' end seq. 
>CHM455F.Seq
TATTCTTCCANGAGAATCCAAATTTGATCGAAGGTGAANGTCATGAACATAGCGCACGTA
NTCCACTGCTTGCAGAGGATCAACACGTTTCATAAGTTGCCAAACAANGTGTTAAATTAT
GTTTCATCACTGGTGTTATGAATACAGACAAGATGCCACAATTCCAACGTTCACTTTGGA
GAACCACCCGTGGTAACAATTATGTCAAGGATGCACGTATCGAAGAGGAAATCATTGATC
CACAAACTGGCGAGGAAACTGCCAAGACTGTATTCATTGTTTTCTTCCAAGGTGAGAGAT
TACAACAAAAAATTAAAAAGATTTGTGAATCATTTGGTGCCAACATCTACGATTGTCCAG
ATAATTCATTCGAACGTTCAAATCTTTTACAAAAAGTTACTGTTCGTATCACTGATCTCT
ATGAAGTTTTACAACGTTCAAAGGATCACAAGANACAAACTTTANCAGGTACCGTACCAA
GACTTTACTCATGGANNNNNNNNNN
Length of 5' end seq. 505
3' end seq. ID CHM455Z
3' end seq. 
>CHM455Z.Seq
NNNNNNNNNNCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGCTCTCATTTCC
ATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTTCCAAGAAGTC
GAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCTCTACACTGGT
CATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCATTCATACCATC
GAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATGGGCTCTTTCA
TTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGGTCAAGTCGAA
CGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGCCTCTGTTGCT
GTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTTAGACTTCATTGGGTA
GAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATTCCATACAGTGCCACT
CGTATTCTTTCGGTTCTGAAGATGATGAATAAATCATTAACAACTAAATAAATAAATAAA
AAAAAAAA
Length of 3' end seq. 608
Connected seq. ID CHM455P
Connected seq. 
>CHM455P.Seq
TATTCTTCCANGAGAATCCAAATTTGATCGAAGGTGAANGTCATGAACATAGCGCACGTA
NTCCACTGCTTGCAGAGGATCAACACGTTTCATAAGTTGCCAAACAANGTGTTAAATTAT
GTTTCATCACTGGTGTTATGAATACAGACAAGATGCCACAATTCCAACGTTCACTTTGGA
GAACCACCCGTGGTAACAATTATGTCAAGGATGCACGTATCGAAGAGGAAATCATTGATC
CACAAACTGGCGAGGAAACTGCCAAGACTGTATTCATTGTTTTCTTCCAAGGTGAGAGAT
TACAACAAAAAATTAAAAAGATTTGTGAATCATTTGGTGCCAACATCTACGATTGTCCAG
ATAATTCATTCGAACGTTCAAATCTTTTACAAAAAGTTACTGTTCGTATCACTGATCTCT
ATGAAGTTTTACAACGTTCAAAGGATCACAAGANACAAACTTTANCAGGTACCGTACCAA
GACTTTACTCATGGA----------CTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTC
TTGGCTCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTC
CACTTCCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAA
GCTCTCTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAA
GTCATTCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGT
TTATGGGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTC
ATTGGTCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTA
GGTGCCTCTGTTGCTGTACTTTTACTTATGGAATCCCTTTCTGCTTTCTTGCACGCTCTT
AGACTTCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGTTAGATTCATT
CCATACAGTGCCACTCGTATTCTTTCGGTTCTGAAGATGATGAATAAATCATTAACAACT
AAATAAATAAATAAAAAAAAAAA
Length of connected seq. 1093
Full length Seq ID -
Full length Seq. -
Length of full length seq. -