CHM315
Library CH
(Link to library)
Clone ID CHM315
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11791-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHM315 (CHM315Q) /CSM/CH/CHM3-A/CHM315Q.Seq.d/
ATTTTATAAATATCATAGAAATAAATTATATCTTTTATAATTATAATTTTAATAAATATA
AAATTCCGATAAAATATAAATTGTTAAGAATATAGATAGATAAAATAAAGATAAACAATT
GAAAAAAAAAAAAAAGAAANAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
FINIIEINYIFYNYNFNKYKIPIKYKLLRI*idkikinn*kkkkrxk---


Translated Amino Acid sequence (All Frames)
Frame A:
il*is*k*iisfiiiilinikfr*ninc*eyr*ik*r*tiekkkkexk---


Frame B:
fykyhrnklyll*l*f**i*nsdki*ivknidr*nkdkqlkkkkkkxk---


Frame C:
FINIIEINYIFYNYNFNKYKIPIKYKLLRI*idkikinn*kkkkrxk---


Homology vs CSM-cDNA -
own update ----------
Homology vs DNA

***** No hits found ******

Lambda K H
-1.00 -1.00 -1.00

[blastall] WARNING: [000.000] 1113163273.dictycdb.dna: SetUpBlastSearch failed.
[blastall] ERROR: [000.000] 1113163273.dictycdb.dna: BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.









Dictyostelium discoideum cDNA Project Home



dna update 2005. 4.15
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 56,463,407
protein update 2009. 4. 8
PSORT

psg: 0.75 gvh: -0.11 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for CHM315 is nuc

5' end seq. ID CHM315F
5' end seq.
>CHM315F.Seq
ATTTTATAAATATCATAGAAATAAATTATATCTTTTATAATTATAATTTTAATAAATATA
AAATTCCGATAAAATATAAATTGTTAAGAATATAGATAGATAAAATAAAGATAAACAATT
GAAAAAAAAAAAAAAGAAANAAAAAANNNNNNNNNN
Length of 5' end seq. 156
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -