>CHM314 (CHM314Q) /CSM/CH/CHM3-A/CHM314Q.Seq.d/
TTATTANAGAGAAATTTGGAAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGAC
ATTCATCATTGACACCAACATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATC
GTATTCACTATGAATTGAAAAAGAAATTTAAAGAAGAAAAGAATTTACAATTTAAATGGA
GAGGTAGTCCAGAAGGTGTTAGACCAAAATCAGATATATTAGCTCATGTTTTCGATGATT
TCTATACAAGTCCACCACATATGAGTTTTGATGGTTACAATTTCCTTGCCTATGGTTTAC
CAAGATTAACAATGGAAATGATTGAATTGGCACGTAATCGTTCAGTATTTTATAAATCTC
CACATGTTTTAATTCCAATGGGTGGTGATTTCGCTTTTAAAAATGCTTACAAATCATTTG
AACAAATAGATCAATTAGTTGCAAGTATCAATGGTCAACATGCAAATGGTGAATCCAATG
TGATCTGTCAGTATAGTACATTGGCTGATTTCTTTTCCGATACTATCAATTGGCATAATG
AAAATAAAGTTTCATTCAATTATTATGATTCTGATTTCTTTCCATATGCTGATGATTCAA
ATACCTATTGGACTGGTTATTATACATCTAGXXXXXXXXXX

IXEKFGKQPESGWQIDPFGHSSLTPTLQAQFGYKHVVLNRIHYELKKKFKEEKNLQFKWR
GSPEGVRPKSDILAHVFDDFYTSPPHMSFDGYNFLAYGLPRLTMEMIELARNRSVFYKSP
HVLIPMGGDFAFKNAYKSFEQIDQLVASINGQHANGESNVICQYSTLADFFSDTINWHNE
NKVSFNYYDSDFFPYADDSNTYWTGYYTS---

Frame A:
llxrnlennqrvdgklihldihh*hqhyklnlvinmly*ivftmn*krnlkkkriynlng
evvqkvldqnqiy*lmfsmisiqvhhi*vlmvtislpmvyqd*qwk*lnwhvivqyfinl
hmf*fqwvvisllkmltnhlnk*in*lqvsmvnmqmvnpm*svsivhwlisfpilsigim
kikfhsiimilisfhmlmiqipiglviihl---


Frame B:
yxreiwkttrewman*siwtfiidtnitssiwl*tcciesysl*iekei*rrkefti*me
r*srrc*tkiryisscfr*flyksttyef*wlqfpclwftkinngnd*igt*sfsil*is
tcfnsngw*frf*kclqii*tnrsisckyqwstckw*iqcdlsv*yig*flfryyqla**
k*sfiqll*f*flsic**fkylldwllyi---


Frame C:
IXEKFGKQPESGWQIDPFGHSSLTPTLQAQFGYKHVVLNRIHYELKKKFKEEKNLQFKWR
GSPEGVRPKSDILAHVFDDFYTSPPHMSFDGYNFLAYGLPRLTMEMIELARNRSVFYKSP
HVLIPMGGDFAFKNAYKSFEQIDQLVASINGQHANGESNVICQYSTLADFFSDTINWHNE
NKVSFNYYDSDFFPYADDSNTYWTGYYTS---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM314 (CHM314Q) /CSM/CH/CHM3-A/CHM314Q.Seq.d/                       1245   0.0
CHN806 (CHN806Q) /CSM/CH/CHN8-A/CHN806Q.Seq.d/                       1217   0.0
SHD557 (SHD557Q) /CSM/SH/SHD5-C/SHD557Q.Seq.d/                       1063   0.0
AHK482 (AHK482Q) /CSM/AH/AHK4-D/AHK482Q.Seq.d/                       1041   0.0
SHD243 (SHD243Q) /CSM/SH/SHD2-B/SHD243Q.Seq.d/                       1021   0.0
CHG562 (CHG562Q) /CSM/CH/CHG5-C/CHG562Q.Seq.d/                        969   0.0
CHG291 (CHG291Q) /CSM/CH/CHG2-D/CHG291Q.Seq.d/                        902   0.0
CHF318 (CHF318Q) /CSM/CH/CHF3-A/CHF318Q.Seq.d/                        884   0.0
SSA170 (SSA170Q) /CSM/SS/SSA1-C/SSA170Q.Seq.d/                        876   0.0
CFB544 (CFB544Q) /CSM/CF/CFB5-B/CFB544Q.Seq.d/                        809   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CF445746|CF445746.1 EST682091 normalized cDNA library of onion Allium cepa cDNA cloneACAHS20, mRNA sequence.    60   5e-05  1
BG449666|BG449666.1 NF055D11IN1F1092 Insect herbivory Medicago truncatula cDNA clone NF055D11IN 5', mRNA sequence.    58   2e-04  1
BQ141173|BQ141173.1 NF016G07PH1F1056 Phoma-infected Medicago truncatula cDNA clone NF016G07PH 5', mRNA sequence.    58   2e-04  1
BU798139|BU798139.1 SJF2AAF09 SJF Schistosoma japonicum cDNA, mRNA sequence.    56   8e-04  1
BU804021|BU804021.1 SJFBFG06 SJF Schistosoma japonicum cDNA, mRNA sequence.    56   8e-04  1
CF196667|CF196667.1 Ir64bi1.6_B04 IR64-BI Oryza sativa (indica cultivar-group) cDNA clone IR64-BI1.6B04 5', mRNA sequence.    56   8e-04  1
CV682907|CV682907.1 service43_H06_sjs2-16-2B11-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    56   8e-04  1
BU798369|BU798369.1 SJF2ADB01 SJF Schistosoma japonicum cDNA, mRNA sequence.    56   8e-04  1
CV688215|CV688215.1 sjs2-16-2_G01_sjs2-16-2G01-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    56   8e-04  1
CV682854|CV682854.1 service30_G09_sjs2-14-10C09-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    56   8e-04  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY036155_1(AY036155|pid:none) Cavia porcellus lysosomal alpha-ma...   108   9e-23
(Q8VHC8) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   108   9e-23
U87240_1(U87240|pid:none) Mus musculus lysosomal alpha-mannosida...   107   2e-22
U29947_1(U29947|pid:none) Mus musculus alpha-D-mannosidase (Man2...   107   2e-22
AF044192_1(AF044192|pid:none) Mus musculus lysosomal alpha-manno...   107   2e-22
BC154722_1(BC154722|pid:none) Xenopus tropicalis hypothetical pr...   107   3e-22
BC061819_1(BC061819|pid:none) Rattus norvegicus mannosidase 2, a...   106   5e-22
AK004817_1(AK004817|pid:none) Mus musculus adult male lung cDNA,...   106   6e-22
(Q29451) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   104   2e-21
AE014134_1971(AE014134|pid:none) Drosophila melanogaster chromos...   104   2e-21

 psg: 0.72  gvh: 0.50  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CHM314 is nuc

>CHM314F.Seq
TTATTANAGAGAAATTTGGAAAACAACCAGAGAGTGGATGGCAAATTGATCCATTTGGAC
ATTCATCATTGACACCAACATTACAAGCTCAATTTGGTTATAAACATGTTGTATTGAATC
GTATTCACTATGAATTGAAAAAGAAATTTAAAGAAGAAAAGAATTTACAATTTAAATGGA
GAGGTAGTCCAGAAGGTGTTAGACCAAAATCAGATATATTAGCTCATGTTTTCGATGATT
TCTATACAAGTCCACCACATATGAGTTTTGATGGTTACAATTTCCTTGCCTATGGTTTAC
CAAGATTAACAATGGAAATGATTGAATTGGCACGTAATCGTTCAGTATTTTATAAATCTC
CACATGTTTTAATTCCAATGGGTGGTGATTTCGCTTTTAAAAATGCTTACAAATCATTTG
AACAAATAGATCAATTAGTTGCAAGTATCAATGGTCAACATGCAAATGGTGAATCCAATG
TGATCTGTCAGTATAGTACATTGGCTGATTTCTTTTCCGATACTATCAATTGGCATAATG
AAAATAAAGTTTCATTCAATTATTATGATTCTGATTTCTTTCCATATGCTGATGATTCAA
ATACCTATTGGACTGGTTATTATACATCTAGNNNNNNNNNN