CHM312
Library CH
(Link to library)
Clone ID CHM312
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHM312 (CHM312Q) /CSM/CH/CHM3-A/CHM312Q.Seq.d/
XXXXXXXXXXTAAATACCGTTATNTTGATNAANAAGATATTNATNAANATTTCAATGGTA
ATNATGAATTTNAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAG
sequence update 2002. 9.10
Translated Amino Acid sequence
---KYRYXDXXDIXXXFNGNXEFXIDVEGDFQEDDFE


Translated Amino Acid sequence (All Frames)
Frame A:
---KYRYXDXXDIXXXFNGNXEFXIDVEGDFQEDDFE


Frame B:
---ntvxlxxkixxxismvxmnxklmlkviskkmisk


Frame C:
---iplx*xxryxxxfqw*x*ixn*c*r*fprr*fr


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHM312 (CHM312Q) /CSM/CH/CHM3-A/CHM312Q.Seq.d/ 159 1e-38
SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/ 151 2e-36
SSM396 (SSM396Q) /CSM/SS/SSM3-D/SSM396Q.Seq.d/ 151 2e-36
SSL605 (SSL605Q) /CSM/SS/SSL6-A/SSL605Q.Seq.d/ 151 2e-36
SSL330 (SSL330Q) /CSM/SS/SSL3-B/SSL330Q.Seq.d/ 151 2e-36
SSL212 (SSL212Q) /CSM/SS/SSL2-A/SSL212Q.Seq.d/ 151 2e-36
SSK815 (SSK815Q) /CSM/SS/SSK8-A/SSK815Q.Seq.d/ 151 2e-36
SSJ312 (SSJ312Q) /CSM/SS/SSJ3-A/SSJ312Q.Seq.d/ 151 2e-36
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/ 151 2e-36
SSH773 (SSH773Q) /CSM/SS/SSH7-D/SSH773Q.Seq.d/ 151 2e-36

own update 2002.10. 2
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 151 1e-33 2
M26238|M26238.1 D.discoideum spore coat protein SP70 gene, complete cds. 151 3e-33 1
CR311568|CR311568.1 mte1-33P23FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula. 40 0.51 2
U67580|U67580.1 Methanocaldococcus jannaschii DSM 2661 section 122 of 150 of the complete genome. 36 2.6 3
AC140418|AC140418.3 Mus musculus BAC clone RP24-418D12 from chromosome 5, complete sequence. 40 7.2 1
AC119276|AC119276.6 Mus musculus chromosome 5, clone RP24-459D3, complete sequence. 40 7.2 1
CR304350|CR304350.1 mte1-23H11RM2 BAC end, cultivar Jemalong A17 of Medicago truncatula. 40 7.2 1
CR304529|CR304529.1 mte1-23H12RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula. 40 7.2 1

dna update 2005. 4.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 55 6e-07

protein update 2009. 1. 3
PSORT

psg: 0.74 gvh: 0.25 alm: 0.62 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial

>> prediction for CHM312 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHM312Z
3' end seq.
>CHM312Z.Seq
NNNNNNNNNNTAAATACCGTTATNTTGATNAANAAGATATTNATNAANATTTCAATGGTA
ATNATGAATTTNAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAG
Length of 3' end seq. 114
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -