>CHM274 (CHM274Q) /CSM/CH/CHM2-D/CHM274Q.Seq.d/
XXXXXXXXXXCAGTAACAACCCGTAATGATNNAAGAAAGAGAAGATAAATCAGATTACTC
AATGCATCCCACCCATACTTTAGCAACAATGGTGGTTCATATAATTAAACATTCACCTCA
TGTCATTCGTTTAATAAAAAATATAATCCATTTNATTCAATATNAATNAAATCA

---*QPVMXXEREDKSDYSMHPTHTLATMVVHIIKHSPHVIRLIKNIIHXIQYXXN

Frame A:
---snnp**xkkekinqitqcippil*qqwwfi*lnihlmsfv**ki*sixfnxnxi


Frame B:
---vttrndxrkrr*irllnashpyfsnnggsyn*tftschsfnkkynpfxsixxks


Frame C:
---*QPVMXXEREDKSDYSMHPTHTLATMVVHIIKHSPHVIRLIKNIIHXIQYXXN

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM274 (CHM274Q) /CSM/CH/CHM2-D/CHM274Q.Seq.d/                        295   1e-79
SHF350 (SHF350Q) /CSM/SH/SHF3-C/SHF350Q.Seq.d/                        220   5e-57
CHS279 (CHS279Q) /CSM/CH/CHS2-D/CHS279Q.Seq.d/                        220   5e-57
CHR309 (CHR309Q) /CSM/CH/CHR3-A/CHR309Q.Seq.d/                        220   5e-57
CHN462 (CHN462Q) /CSM/CH/CHN4-C/CHN462Q.Seq.d/                        220   5e-57
VHL641 (VHL641Q) /CSM/VH/VHL6-B/VHL641Q.Seq.d/                        214   3e-55
VHI635 (VHI635Q) /CSM/VH/VHI6-B/VHI635Q.Seq.d/                        214   3e-55
VHA560 (VHA560Q) /CSM/VH/VHA5-C/VHA560Q.Seq.d/                        214   3e-55
CHR836 (CHR836Q) /CSM/CH/CHR8-B/CHR836Q.Seq.d/                        214   3e-55
CHL717 (CHL717Q) /CSM/CH/CHL7-A/CHL717Q.Seq.d/                        214   3e-55

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC006742|AC006742.2 Caenorhabditis elegans cosmid Y38C1AB, complete sequence.    38   0.024  2
AX252120|AX252120.1 Sequence 381 from Patent WO0168911.            42   0.056  3
BD460584|BD460584.1 Diagnosis of Diseases Associated with Cell Cycle.    42   0.056  3
BD452506|BD452506.1 Diagnosis of Diseases Associated with Cell Cycle.    42   0.056  3
L35306|L35306.1 Lycopersicon esculentum malate dehydrogenase gene, partial cds.    46   0.19   1
BZ059189|BZ059189.1 lld78f08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    38   0.40   2
CF088001|CF088001.1 QHM17J02.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM17J02, mRNA sequence.    44   0.75   1
CF090677|CF090677.1 QHM5M08.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM5M08, mRNA sequence.    44   0.75   1
AL138893|AL138893.5 Human DNA sequence from clone RP11-159L16 on chromosome 9p21.1-21.3.    38   0.77   4
AQ197871|AQ197871.1 CIT-HSP-2385E10.TF CIT-HSP Homo sapiens genomic clone 2385E10, genomic survey sequence.    34   0.85   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QS3) RecName: Full=Probable ATP-dependent RNA helicase ddx3;...    33   0.038

 psg: 0.75  gvh: 0.26  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CHM274 is nuc

>CHM274Z.Seq
NNNNNNNNNNCAGTAACAACCCGTAATGATNNAAGAAAGAGAAGATAAATCAGATTACTC
AATGCATCCCACCCATACTTTAGCAACAATGGTGGTTCATATAATTAAACATTCACCTCA
TGTCATTCGTTTAATAAAAAATATAATCCATTTNATTCAATATNAATNAAATCA