CHM255
Library CH
(Link to library)
Clone ID CHM255
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16510-1|Contig-U16524-1
Original site URL
Representative seq. ID CHM255P
(Link to Original site)
Representative DNA sequence
>CHM255 (CHM255Q) /CSM/CH/CHM2-C/CHM255Q.Seq.d/
AACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAATAATA
ATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAATAATTATT
ATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAAXXXXXXXXXXTCAT
NTTCACCATCATCATCTGCTGCAAGCTCTTCTCCATCTTCATNTGCTGCAAGCTCTTCTC
CATCTTCATCTGCTGCAAGCTCTTCCCCNTCTTCATCTGCATCATCAAGCTCTTCCCCNT
CTTCATCTGCATCATCAAGCTNTGCCCCATCTTCATCTGCATCATCAAGCTCTGCTCCAT
CTTCATCTGCATCATCTTCATCTGCATCATCTTCATNTGCATCATNTGCAGCAACTACAG
CTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTACAACCGCAACCACA
sequence update 2002.10.25
Translated Amino Acid sequence
nsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK---

---SXSPSSSAASSSPSSXAASSSPSSSAASSSPSSSASSSSSPSSSASSSXAPSSSASS
SSAPSSSASSSSASSSXASXAATTAATTIATTAATTTATTTATT


Translated Amino Acid sequence (All Frames)
Frame A:
nsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*INNKKK---

---SXSPSSSAASSSPSSXAASSSPSSSAASSSPSSSASSSSSPSSSASSSXAPSSSASS
SSAPSSSASSSSASSSXASXAATTAATTIATTAATTTATTTATT

Frame B:
tq*****k**q**giiik**ysynl*ll**nyvyiyk*lllslflkink*iikkk---

---hxhhhhllqallhlhxlqallhlhllqalpxlhlhhqalpxlhlhhqaxphlhlhhq
allhlhlhhlhlhhlhxhhxqqlqlqlqlqlqlqlqlqlqpqp

Frame C:
lsnnnnknnnnnkel*snnniaiiynyyskitytyinnyyyhcf*k*ink**kk---

---xftiiiccklfsifxccklfsificcklfpxficiiklfpxficiiklcpificiik
lcsificiificiifxcixcsnyscnyncnyscnyncnynrnh

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLH548 (SLH548Q) /CSM/SL/SLH5-B/SLH548Q.Seq.d/ 268 7e-71
SLH472 (SLH472Q) /CSM/SL/SLH4-C/SLH472Q.Seq.d/ 268 7e-71
SLH386 (SLH386Q) /CSM/SL/SLH3-D/SLH386Q.Seq.d/ 268 7e-71
SLH314 (SLH314Q) /CSM/SL/SLH3-A/SLH314Q.Seq.d/ 268 7e-71
SLH308 (SLH308Q) /CSM/SL/SLH3-A/SLH308Q.Seq.d/ 268 7e-71
SLF396 (SLF396Q) /CSM/SL/SLF3-D/SLF396Q.Seq.d/ 268 7e-71
SLE543 (SLE543Q) /CSM/SL/SLE5-B/SLE543Q.Seq.d/ 268 7e-71
SLE435 (SLE435Q) /CSM/SL/SLE4-B/SLE435Q.Seq.d/ 268 7e-71
SLE278 (SLE278Q) /CSM/SL/SLE2-D/SLE278Q.Seq.d/ 268 7e-71
SLE218 (SLE218Q) /CSM/SL/SLE2-A/SLE218Q.Seq.d/ 268 7e-71

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96. 268 e-103 4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 268 7e-99 5
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 68 2e-07 1
AC122076|AC122076.4 Rattus norvegicus clone CH230-277E22, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 62 1e-05 1
AC154740|AC154740.1 Mus musculus chromosome 9 clone RP23-118I16, WORKING DRAFT SEQUENCE, 30 unordered pieces. 60 4e-05 1
AC112599|AC112599.4 Rattus norvegicus clone CH230-112A20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 60 4e-05 1
AL672127|AL672127.9 Mouse DNA sequence from clone RP23-370O18 on chromosome X. 60 4e-05 1
AC136541|AC136541.1 Rattus norvegicus clone CH230-287A11, *** SEQUENCING IN PROGRESS ***, 55 unordered pieces. 60 4e-05 1
Y17350|Y17350.1 Laminaria digitata simple tandem repeat DNA, Ld2-167. 60 4e-05 1
AC102934|AC102934.9 Mus musculus chromosome 3 clone RP24-209C11 map 3, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces. 58 2e-04 1
dna update 2005. 4.11
Homology vs Protein

***** No hits found ******

Lambda K H
0.295 0.117 0.334

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 83,612,981
protein update 2009. 4. 8
PSORT

psg: 0.75 gvh: 0.57 alm: 0.48 top: 0.53 tms: 0.00 mit: 1.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: mitochondrial
12.0 %: nuclear
8.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for CHM255 is mit

5' end seq. ID CHM255F
5' end seq.
>CHM255F.Seq
AACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAATAATA
ATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAATAATTATT
ATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 176
3' end seq. ID CHM255Z
3' end seq.
>CHM255Z.Seq
NNNNNNNNNNTCATNTTCACCATCATCATCTGCTGCAAGCTCTTCTCCATCTTCATNTGC
TGCAAGCTCTTCTCCATCTTCATCTGCTGCAAGCTCTTCCCCNTCTTCATCTGCATCATC
AAGCTCTTCCCCNTCTTCATCTGCATCATCAAGCTNTGCCCCATCTTCATCTGCATCATC
AAGCTCTGCTCCATCTTCATCTGCATCATCTTCATCTGCATCATCTTCATNTGCATCATN
TGCAGCAACTACAGCTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTAC
AACCGCAACCACA
Length of 3' end seq. 313
Connected seq. ID CHM255P
Connected seq.
>CHM255P.Seq
AACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTATAATCAAATAATA
ATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATATAAATAATTATT
ATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAA----------TCAT
NTTCACCATCATCATCTGCTGCAAGCTCTTCTCCATCTTCATNTGCTGCAAGCTCTTCTC
CATCTTCATCTGCTGCAAGCTCTTCCCCNTCTTCATCTGCATCATCAAGCTCTTCCCCNT
CTTCATCTGCATCATCAAGCTNTGCCCCATCTTCATCTGCATCATCAAGCTCTGCTCCAT
CTTCATCTGCATCATCTTCATCTGCATCATCTTCATNTGCATCATNTGCAGCAACTACAG
CTGCAACTACAATTGCAACTACAGCTGCAACTACAACTGCAACTACAACCGCAACCACA
Length of connected seq. 469
Full length Seq ID -
Full length Seq. -
Length of full length seq. -