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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM253
Library CH
(Link to library)
Clone ID CHM253
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16256-1
Original site URL
Representative seq. ID CHM253P
(Link to Original site)
Representative DNA sequence 
>CHM253 (CHM253Q) /CSM/CH/CHM2-C/CHM253Q.Seq.d/
AAATAATAAAAATAATAATTAATAATAATAAAAATAATAATAACAAATTGAAATTAATAA
ATCACACCAAAAAAAACGTACACACACAAAAATAATAATAAAATGAAAAAGACTTTCATA
TTTTTATACTGTGTGGTTCTTTTTATTTCTACCACTCTAGCAGTTGAAATGAAAAAAACT
CAAGATTTTAATTTAAGAATTTTCGATCAACATCCAAAATATAATAACAATTTTGAACCT
GAAAATGGTGTTTTAACAGTAAATCTTGTAAAATCAATTCTAAATGAAACCACTGGTATT
CCAGAGTTAACCACAATGTCAAATCTTACAACTGTCAATAAACAAGGTCGTATTTATTCA
CCAGAATTATTTAAATACTTTTTCGCTGATAATTCTGATGCTCCAGATAGAAACAATAGT
GGTAAAAATTATCCATTAGATATTACTCTTACAATGAATTTAGATGATAAATCAAATTAT
TTTTATGATAATCAAGAATTTTTCCCAATTGATGGAAGAGGATTTGATGTANATCAACAA
TTCCGTAACTATTATGATGATGAAAGTAAAGCAAATCCAXXXXXXXXXXACTGAAAAAGG
TTGTGTTGAAACTCCACGTGTTTGTCCNTCCAAAGGTNAATGTCAAGTTGGNAAATGTGT
TCCAGGNGTTGGTTGTAAATATNAACCACGNGTTTGTAAAGCTGATGCTTTCTGNTTAGN
TGNTGAATGTGATNAAATAGTTGGTTGTATTCNATTTGAAAANAAATGNGCTGCTGATAA
TGGTANATGTCAAGNTGGTATTTGTAAGAATGCAACTGCNACTGAAGAAGGNACTTGTGA
GTNTGTTGATTTCGATCCNAAACCANTCNTTTGTAAAACTGCTGCTGNTGTTTCAGTTGG
NGTTGCNGTTGGTGNTGCTGTTGGTGGTGCNATTGCNCTTGGNGTCTTTATTTTTGNNGG
TAANAAAGGTTATGACTTNTGGAAAGCNAGTCAAGGTGNTNCNATGGCCCCNTCNAATGC
CNATNCCCTTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
k**k**liiikiiitn*n**ITPKKTYTHKNNNKMKKTFIFLYCVVLFISTTLAVEMKKT
QDFNLRIFDQHPKYNNNFEPENGVLTVNLVKSILNETTGIPELTTMSNLTTVNKQGRIYS
PELFKYFFADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYDNQEFFPIDGRGFDVXQQ
FRNYYDDESKANP---

---TEKGCVETPRVCPSKGXCQVGKCVPGVGCKYXPRVCKADAFXLXXECDXIVGCIXFE
XKXAADNGXCQXGICKNATATEEGTCEXVDFDPKPXXCKTAAXVSVGVAVGXAVGGAIAL
GVFIFXGXKGYDXWKASQGXXMAPSNAXXL
Translated Amino Acid sequence (All Frames) 
Frame A:
k**k**liiikiiitn*n**ITPKKTYTHKNNNKMKKTFIFLYCVVLFISTTLAVEMKKT
QDFNLRIFDQHPKYNNNFEPENGVLTVNLVKSILNETTGIPELTTMSNLTTVNKQGRIYS
PELFKYFFADNSDAPDRNNSGKNYPLDITLTMNLDDKSNYFYDNQEFFPIDGRGFDVXQQ
FRNYYDDESKANP---

---TEKGCVETPRVCPSKGXCQVGKCVPGVGCKYXPRVCKADAFXLXXECDXIVGCIXFE
XKXAADNGXCQXGICKNATATEEGTCEXVDFDPKPXXCKTAAXVSVGVAVGXAVGGAIAL
GVFIFXGXKGYDXWKASQGXXMAPSNAXXL

Frame B:
nnknnn****k***qieinkshqkkrthtkiiik*krlsyfytvwfflflpl*qlk*kkl
kili*efsiniqniitilnlkmvf*q*il*nqf*mkplvfqs*pqcqilqlsinkvvfih
qnylntfsliilmlqietivvkiih*illlq*i*minqiifmiiknfsqlmeedlmxinn
svtimmmkvkqi---

---lkkvvlklhvfvxpkvnvklxnvfqxlvvnxnhxfvklmlsx*xxnvxk*lvvfxlk
xnxllimvxvkxvfvrmqlxlkkxlvsxlisixnxsfvklllxfqlxlxlvxllvvxlxl
xslflxvxkvmtxgkxvkvxxwpxxmpxpf

Frame C:
iikiiinnnknnnnklklinhtkknvhtqk***nekdfhifilcgsfyfyhsss*nekns
rf*fknfrstski**qf*t*kwcfnsksckinsk*nhwysrvnhnvksyncq*trsylft
rii*ilfr**f*csr*kq*w*klsiryysynefr**iklfl**srifpn*wkri*cxsti
p*ll***k*sks---

---*krlc*nstclsxqrxmsswxmcsrxwl*ixttxl*s*cflxxx*m*xnswlysi*k
xmxc**wxmsxwyl*ecncx*rrxl*vc*frsxtxxl*nccxcfswxcxwxccwwcxcxw
xlyfxx*xrl*lxesxsrxxxgpxxcxxpl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL390 (SHL390Q) /CSM/SH/SHL3-D/SHL390Q.Seq.d/                        950   0.0
SHJ448 (SHJ448Q) /CSM/SH/SHJ4-B/SHJ448Q.Seq.d/                        950   0.0
SHJ195 (SHJ195Q) /CSM/SH/SHJ1-D/SHJ195Q.Seq.d/                        950   0.0
SHI807 (SHI807Q) /CSM/SH/SHI8-A/SHI807Q.Seq.d/                        950   0.0
SHH122 (SHH122Q) /CSM/SH/SHH1-A/SHH122Q.Seq.d/                        950   0.0
SHG866 (SHG866Q) /CSM/SH/SHG8-C/SHG866Q.Seq.d/                        950   0.0
SHG676 (SHG676Q) /CSM/SH/SHG6-D/SHG676Q.Seq.d/                        950   0.0
SHG208 (SHG208Q) /CSM/SH/SHG2-A/SHG208Q.Seq.d/                        950   0.0
SHF415 (SHF415Q) /CSM/SH/SHF4-A/SHF415Q.Seq.d/                        950   0.0
SHF223 (SHF223Q) /CSM/SH/SHF2-A/SHF223Q.Seq.d/                        950   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

G65023|G65023.1 DH0304 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideumSTS genomic 5', sequence tagged site.   381   e-101  1
U67940|U67940.1 Dictyostelium discoideum ORFveg106 mRNA, complete cds.    52   1e-12  5
AB053203|AB053203.1 Dictyostelium discoideum psiA mRNA for Psi facor, complete cds.    38   3e-08  6
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    36   1e-05  12
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    42   3e-05  13
AE017147|AE017147.1 Helicobacter hepaticus ATCC 51449 section 4 of 6 of the complete genome.    52   4e-05  2
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    40   2e-04  14
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    42   5e-04  12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   0.001  17
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   0.002  16
dna update 2005. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   136   1e-30
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...   133   8e-30
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                126   1e-27
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                117   5e-25
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   114   4e-24
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   110   7e-23
(Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor;                 96   1e-18
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                 94   7e-18
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 68   4e-10
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 65   4e-09
protein update 2009. 4. 8
PSORT 

 psg: 0.38  gvh: 0.70  alm: 0.21  top: 0.10  tms: 0.13  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 28.0 %: mitochondrial
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: cytoplasmic
	  4.0 %: peroxisomal
	  4.0 %: vesicles of secretory system

>> prediction for CHM253 is end
5' end seq. ID CHM253F
5' end seq. 
>CHM253F.Seq
AAATAATAAAAATAATAATTAATAATAATAAAAATAATAATAACAAATTGAAATTAATAA
ATCACACCAAAAAAAACGTACACACACAAAAATAATAATAAAATGAAAAAGACTTTCATA
TTTTTATACTGTGTGGTTCTTTTTATTTCTACCACTCTAGCAGTTGAAATGAAAAAAACT
CAAGATTTTAATTTAAGAATTTTCGATCAACATCCAAAATATAATAACAATTTTGAACCT
GAAAATGGTGTTTTAACAGTAAATCTTGTAAAATCAATTCTAAATGAAACCACTGGTATT
CCAGAGTTAACCACAATGTCAAATCTTACAACTGTCAATAAACAAGGTCGTATTTATTCA
CCAGAATTATTTAAATACTTTTTCGCTGATAATTCTGATGCTCCAGATAGAAACAATAGT
GGTAAAAATTATCCATTAGATATTACTCTTACAATGAATTTAGATGATAAATCAAATTAT
TTTTATGATAATCAAGAATTTTTCCCAATTGATGGAAGAGGATTTGATGTANATCAACAA
TTCCGTAACTATTATGATGATGAAAGTAAAGCAAATCCANNNNNNNNNN
Length of 5' end seq. 589
3' end seq. ID CHM253Z
3' end seq. 
>CHM253Z.Seq
NNNNNNNNNNACTGAAAAAGGTTGTGTTGAAACTCCACGTGTTTGTCCNTCCAAAGGTNA
ATGTCAAGTTGGNAAATGTGTTCCAGGNGTTGGTTGTAAATATNAACCACGNGTTTGTAA
AGCTGATGCTTTCTGNTTAGNTGNTGAATGTGATNAAATAGTTGGTTGTATTCNATTTGA
AAANAAATGNGCTGCTGATAATGGTANATGTCAAGNTGGTATTTGTAAGAATGCAACTGC
NACTGAAGAAGGNACTTGTGAGTNTGTTGATTTCGATCCNAAACCANTCNTTTGTAAAAC
TGCTGCTGNTGTTTCAGTTGGNGTTGCNGTTGGTGNTGCTGTTGGTGGTGCNATTGCNCT
TGGNGTCTTTATTTTTGNNGGTAANAAAGGTTATGACTTNTGGAAAGCNAGTCAAGGTGN
TNCNATGGCCCCNTCNAATGCCNATNCCCTTTA
Length of 3' end seq. 453
Connected seq. ID CHM253P
Connected seq. 
>CHM253P.Seq
AAATAATAAAAATAATAATTAATAATAATAAAAATAATAATAACAAATTGAAATTAATAA
ATCACACCAAAAAAAACGTACACACACAAAAATAATAATAAAATGAAAAAGACTTTCATA
TTTTTATACTGTGTGGTTCTTTTTATTTCTACCACTCTAGCAGTTGAAATGAAAAAAACT
CAAGATTTTAATTTAAGAATTTTCGATCAACATCCAAAATATAATAACAATTTTGAACCT
GAAAATGGTGTTTTAACAGTAAATCTTGTAAAATCAATTCTAAATGAAACCACTGGTATT
CCAGAGTTAACCACAATGTCAAATCTTACAACTGTCAATAAACAAGGTCGTATTTATTCA
CCAGAATTATTTAAATACTTTTTCGCTGATAATTCTGATGCTCCAGATAGAAACAATAGT
GGTAAAAATTATCCATTAGATATTACTCTTACAATGAATTTAGATGATAAATCAAATTAT
TTTTATGATAATCAAGAATTTTTCCCAATTGATGGAAGAGGATTTGATGTANATCAACAA
TTCCGTAACTATTATGATGATGAAAGTAAAGCAAATCCA----------ACTGAAAAAGG
TTGTGTTGAAACTCCACGTGTTTGTCCNTCCAAAGGTNAATGTCAAGTTGGNAAATGTGT
TCCAGGNGTTGGTTGTAAATATNAACCACGNGTTTGTAAAGCTGATGCTTTCTGNTTAGN
TGNTGAATGTGATNAAATAGTTGGTTGTATTCNATTTGAAAANAAATGNGCTGCTGATAA
TGGTANATGTCAAGNTGGTATTTGTAAGAATGCAACTGCNACTGAAGAAGGNACTTGTGA
GTNTGTTGATTTCGATCCNAAACCANTCNTTTGTAAAACTGCTGCTGNTGTTTCAGTTGG
NGTTGCNGTTGGTGNTGCTGTTGGTGGTGCNATTGCNCTTGGNGTCTTTATTTTTGNNGG
TAANAAAGGTTATGACTTNTGGAAAGCNAGTCAAGGTGNTNCNATGGCCCCNTCNAATGC
CNATNCCCTTTA
Length of connected seq. 1022
Full length Seq ID -
Full length Seq. -
Length of full length seq. -