>CHM246 (CHM246Q) /CSM/CH/CHM2-B/CHM246Q.Seq.d/
XXXXXXXXXXTCTCAGAGAGATGAAAGTTAGTAGTAGACAAACTGCATTCAATAAAATCA
GTAAAGATACATTGATTCAACATGTTCGTGTTGTTTCAATGGTGATGGTNATAGTGGTGA
TTGGAAAGAACTCGCCAAATCTAGAGGTTTAGCAAATTTACCATCGACTCCAGAGGCTTT
AACAAATATTAACTCTGAAAAGAATATTCAACTCTTTTGTGAAAGTAATATTCTCTCACC
AGTTGAATTGGAATCACGTCAAGANATTCTCTTTGAAATNTATAATAAATCAATTAAAAT
CGAAGCAAACTCTTTATATGATTGAGTTTCAACTTTGGTACTTCCAGCTTGTTNTGCTCA
TCAAAAGAATATTGCTGAATCTGTAAACTNTATAANGCCATTCATTCAAAGTCAAAAATC
TTTCAGTCAACCAAATCATCAATATTCTCATCTCTCTGAAGTCGTTGAATCTGTCAATCT
CTTAATTGAAGCTAATCAAAAACTNTTGGCTCTCATTAAACAAACTAAAGATTTCAATTN
TGAACATTCACTCGCAACTTTCCTCAATCAATCTGTAATTCCACAAATGAATGAAGTTCG
TAAATTTTCNGCATCATTTAGAAGGTATTG

---qrdes***tnciq*nq*ryidstcsccfngdgxsgdwkelaksrglanlpstpealt
ninsekniqlfcesnilspvelesrqxilfexynksikieanslyd*VSTLVLPACXAHQ
KNIAESVNXIXPFIQSQKSFSQPNHQYSHLSEVVESVNLLIEANQKLLALIKQTKDFNXE
HSLATFLNQSVIPQMNEVRKFSASFRRY

Frame A:
---lremkvssrqtafnkiskdtliqhvrvvsmvmvivvigknspnlev*qiyhrlqrl*
qiltlkrifnsfvkvifshqlnwnhvkxfslkxiinqlkskqtlymiefqlwyfqlvxli
krillnl*tx*xhsfkvknlsvnqiinilislkslnlsis*lkliknxwlslnklkisix
nihsqlssinl*fhk*mkfvnfxhhlegi


Frame B:
---ser*klvvdklhsiksvkih*fnmfvlfqw*wx*w*lertrqi*rfskftidsrgfn
ky*l*keystll*k*yslts*igitsrxsl*nx**in*nrsklfi*lsfnfgtsslxcss
keyc*icklyxaihskskifqstkssifssl*sr*icqsln*s*sktxgsh*tn*rfqx*
tftrnfpqsicnstne*ss*ifxii*kvl


Frame C:
---qrdes***tnciq*nq*ryidstcsccfngdgxsgdwkelaksrglanlpstpealt
ninsekniqlfcesnilspvelesrqxilfexynksikieanslyd*VSTLVLPACXAHQ
KNIAESVNXIXPFIQSQKSFSQPNHQYSHLSEVVESVNLLIEANQKLLALIKQTKDFNXE
HSLATFLNQSVIPQMNEVRKFSASFRRY

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM246 (CHM246Q) /CSM/CH/CHM2-B/CHM246Q.Seq.d/                       1176   0.0
CHS409 (CHS409Q) /CSM/CH/CHS4-A/CHS409Q.Seq.d/                       1114   0.0
CHQ559 (CHQ559Q) /CSM/CH/CHQ5-C/CHQ559Q.Seq.d/                       1114   0.0
CHM692 (CHM692Q) /CSM/CH/CHM6-D/CHM692Q.Seq.d/                       1114   0.0
CHL886 (CHL886Q) /CSM/CH/CHL8-D/CHL886Q.Seq.d/                       1114   0.0
CHL842 (CHL842Q) /CSM/CH/CHL8-B/CHL842Q.Seq.d/                       1114   0.0
CHL605 (CHL605Q) /CSM/CH/CHL6-A/CHL605Q.Seq.d/                       1114   0.0
CHI606 (CHI606Q) /CSM/CH/CHI6-A/CHI606Q.Seq.d/                       1114   0.0
CHI220 (CHI220Q) /CSM/CH/CHI2-A/CHI220Q.Seq.d/                       1114   0.0
CHG760 (CHG760Q) /CSM/CH/CHG7-C/CHG760Q.Seq.d/                       1114   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC099803|AC099803.1 Homo sapiens chromosome 18 clone RP11-152J5 map 18, LOW-PASS SEQUENCE SAMPLING.    40   0.036  2
AC094696|AC094696.4 Rattus norvegicus clone CH230-5F3, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    40   0.11   2
BD193506|BD193506.1 Enterococcus faecialis polynucleotides and polypeptides.    38   0.17   3
AC107128|AC107128.5 Rattus norvegicus clone CH230-133F6, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    40   0.22   3
AC111656|AC111656.3 Rattus norvegicus clone CH230-128O11, *** SEQUENCING IN PROGRESS ***, 23 unordered pieces.    40   0.33   3
AC007178|AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence.    44   0.42   3
CP000029|CP000029.1 Staphylococcus epidermidis RP62A, complete genome.    36   0.77   17
BX255891|BX255891.5 Zebrafish DNA sequence from clone DKEY-263P20 in linkage group 20  Contains the gene for a novel protein similar to vertebrate RAB15,  member RAS onocogene family, the 5' end of the gene for a novel  protein similar to vertebrate farnesyltransferase, CAAX box beta  (FNTB) and three CpG islands.    42   0.98   4
AE016748|AE016748.1 Staphylococcus epidermidis ATCC 12228, section 5 of 9 of the complete genome.    36   1.0    6
CO229850|CO229850.1 WS00110.B21_C24 WS-ES-A-1 Picea glauca cDNA clone WS00110_C24 3', mRNA sequence.    38   1.3    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WR9) RecName: Full=Type-3 glutamine synthetase;          EC=...   313   6e-92
CP001101_909(CP001101|pid:none) Chlorobium phaeobacteroides BS1,...    87   4e-16
AE017285_1252(AE017285|pid:none) Desulfovibrio vulgaris subsp. v...    84   3e-15
AP010656_521(AP010656|pid:none) Candidatus Azobacteroides pseudo...    84   4e-15
CP000096_1380(CP000096|pid:none) Pelodictyon luteolum DSM 273, c...    83   7e-15
CP000885_3336(CP000885|pid:none) Clostridium phytofermentans ISD...    82   1e-14
CP001099_742(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ...    80   4e-14
CP000951_239(CP000951|pid:none) Synechococcus sp. PCC 7002, comp...    80   5e-14
CP000607_1213(CP000607|pid:none) Chlorobium phaeovibrioides DSM ...    80   6e-14
AM398681_531(AM398681|pid:none) Flavobacterium psychrophilum JIP...    80   6e-14

 psg: 0.90  gvh: 0.49  alm: 0.48  top: 0.50  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHM246 is cyt

>CHM246Z.Seq
NNNNNNNNNNTCTCAGAGAGATGAAAGTTAGTAGTAGACAAACTGCATTCAATAAAATCA
GTAAAGATACATTGATTCAACATGTTCGTGTTGTTTCAATGGTGATGGTNATAGTGGTGA
TTGGAAAGAACTCGCCAAATCTAGAGGTTTAGCAAATTTACCATCGACTCCAGAGGCTTT
AACAAATATTAACTCTGAAAAGAATATTCAACTCTTTTGTGAAAGTAATATTCTCTCACC
AGTTGAATTGGAATCACGTCAAGANATTCTCTTTGAAATNTATAATAAATCAATTAAAAT
CGAAGCAAACTCTTTATATGATTGAGTTTCAACTTTGGTACTTCCAGCTTGTTNTGCTCA
TCAAAAGAATATTGCTGAATCTGTAAACTNTATAANGCCATTCATTCAAAGTCAAAAATC
TTTCAGTCAACCAAATCATCAATATTCTCATCTCTCTGAAGTCGTTGAATCTGTCAATCT
CTTAATTGAAGCTAATCAAAAACTNTTGGCTCTCATTAAACAAACTAAAGATTTCAATTN
TGAACATTCACTCGCAACTTTCCTCAATCAATCTGTAATTCCACAAATGAATGAAGTTCG
TAAATTTTCNGCATCATTTAGAAGGTATTG