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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM244
Library CH
(Link to library)
Clone ID CHM244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11262-1
Original site URL
Representative seq. ID CHM244P
(Link to Original site)
Representative DNA sequence 
>CHM244 (CHM244Q) /CSM/CH/CHM2-B/CHM244Q.Seq.d/
TTATAAAAAACAAAACAAAACAAAAATAAAAAAAAATACACTCAAATATTATTTATTTAT
TTATTTATTAATAATTAACAAATGGGAGACCATTTAAAAAATACAAGAGAATGGATAAGA
CATTCATCAAATAAAGACGATGGTAATAATGCAGAAAAAACTCACTTTTTTGGTCATCAC
GAAGAANAAGATCATGAACATATGTTATTTACCAAAGAAGAATTAACAAATCCAAAAGAA
TTGGCTAAAGCAATGAAAGTTAAAATTCCACTTTATGTACCAATTTTTAATTGGATTAAA
TCATATTCAAAAGAAGATTTAATTGGTGATATATTATCATCAATTACAGTAGCAACAATG
TTAGTACCACAAGGTTTAGCATATGCAGTATTAGCAGGATTACCAGCTATTTATGGTTTA
TATAGNGGTTGGTTACCATTGGTTATCTATTCATTTATGGGTGGATGTAAACAATTAGCC
GTTGGACCAGAAGCATTATTATCAGTATTATTGGGATCAATTTTAXXXXXXXXXXTTCGT
ATCGATGAAGTACTCTACTTTGCAAATATTGGTCAATTCAAACAATTACTCTCAGAGATT
GAACGTATGATGGATAGATCAACCAATGTAACCGGTAGTGGTTCTACTCCACTTCAATCA
ATCATTATCAATGTTGTCAATATTCCTGTAATGGATGCTTCTGCTCTACTAACTATTGAA
GAGATGGTTACTGCCTATCATAAACGTAATGTAAAGGTTGCCTTTGTTCAAATGAGTGAA
AAGATTAAGGAATCTTTCAAACAATCTGGTCTTTACGATATTGTAACACCTCAATTCATT
TTCGATATTAATTATGAAGCTGTCTCATTCTTGGAACAAAGTATAAACNTATAGTAATAA
TAATGATTCAAGACAAGTAAACTTAAATATGCCACAAAGTGATCAATCTTATGATGATTT
AAATAATAATGAGGTTGGTGGTTTTGATCAACCATCTTCTTCATCATCTTCACGTTTTAA
TAATCAAAATTTTTTAAACAAAAATAATGATAATAATAATAATAATAATAATAATAACAA
TGATAATAATATTAACGATGATGATTATCAAAATTCTTATAATAATAATAATAATAATGG
TGGTGGTGCAATCCTTTCTGAGGTTTAAAATTAGAGGATTACAGGAACCAGAATCTGAGA
ATTCATTCAAAGTTCAAATCAAAAATCAAAGAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
l*ktkqnknkkkytqilfiylfinn*QMGDHLKNTREWIRHSSNKDDGNNAEKTHFFGHH
EEXDHEHMLFTKEELTNPKELAKAMKVKIPLYVPIFNWIKSYSKEDLIGDILSSITVATM
LVPQGLAYAVLAGLPAIYGLYXGWLPLVIYSFMGGCKQLAVGPEALLSVLLGSIL---

---RIDEVLYFANIGQFKQLLSEIERMMDRSTNVTGSGSTPLQSIIINVVNIPVMDASAL
LTIEEMVTAYHKRNVKVAFVQMSEKIKESFKQSGLYDIVTPQFIFDINYEAVSFLEQSIN
X*****fktsklkyatk*sil**fk***gwwf*stiffiiftf**skffkqk********
***q***y*r**lskfl******wwwcnpf*glkledyrnqnlrihskfkskike
Translated Amino Acid sequence (All Frames) 
Frame A:
l*ktkqnknkkkytqilfiylfinn*QMGDHLKNTREWIRHSSNKDDGNNAEKTHFFGHH
EEXDHEHMLFTKEELTNPKELAKAMKVKIPLYVPIFNWIKSYSKEDLIGDILSSITVATM
LVPQGLAYAVLAGLPAIYGLYXGWLPLVIYSFMGGCKQLAVGPEALLSVLLGSIL---

---fvsmkystlqilvnsnnysqrlnv*widqpm*pvvvllhfnqslsmlsifl*wmlll
y*llkrwllpiinvm*rlplfk*vkrlrnlsnnlvftil*hlnsfsilimklshswnkv*
tysnnndsrqvnlnmpqsdqsyddlnnnevggfdqpssssssrfnnqnflnknndnnnnn
nnnnndnnindddyqnsynnnnnngggailsev*n*ritgtri*efiqssnqkskk

Frame B:
ykkqnktkikkntlkyylfiylliinkweti*kiqeng*dihqiktmvimqkkltflvit
kxkimnicylpkkn*qiqknwlkq*klkfhfmyqfliglnhiqkki*lviyyhqlq*qqc
*yhkv*hmqy*qdyqlfmvyixvgyhwlsihlwvdvnn*pldqkhyyqyywdqf---

---syr*stllckywsiqtitlrd*tydg*inqcnr*wfystsinhyqccqyscngcfcs
tny*rdgycls*t*ckgclcsne*kd*gifqtiwslrycntsihfry*l*sclilgtkyk
xiviimiqdk*t*ichkvinlmmi*iimrlvvlinhllhhlhvliikif*tkimiiiiii
iiitmiiiltmmiikiliiiiiimvvvqsflrfkirglqepesensfkvqiknqrn

Frame C:
iknktkqk*kkihsniiylfiy**ltngrpfkkykrmdktfik*rrw**crknslfwssr
rxrs*tyviyqrrinkskrig*snes*nstlctnf*ld*iifkrrfnw*yiiinyssnnv
sttrfsicsisritsylwfi*xlvtigylfiygwm*tisrwtrsiiisiiginf---

---RIDEVLYFANIGQFKQLLSEIERMMDRSTNVTGSGSTPLQSIIINVVNIPVMDASAL
LTIEEMVTAYHKRNVKVAFVQMSEKIKESFKQSGLYDIVTPQFIFDINYEAVSFLEQSIN
X*****fktsklkyatk*sil**fk***gwwf*stiffiiftf**skffkqk********
***q***y*r**lskfl******wwwcnpf*glkledyrnqnlrihskfkskike
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM244 (CHM244Q) /CSM/CH/CHM2-B/CHM244Q.Seq.d/                       1850   0.0
VHP484 (VHP484Q) /CSM/VH/VHP4-D/VHP484Q.Seq.d/                        981   0.0
VHI482 (VHI482Q) /CSM/VH/VHI4-D/VHI482Q.Seq.d/                        981   0.0
CHR636 (CHR636Q) /CSM/CH/CHR6-B/CHR636Q.Seq.d/                        981   0.0
CHL772 (CHL772Q) /CSM/CH/CHL7-C/CHL772Q.Seq.d/                        981   0.0
CHI591 (CHI591Q) /CSM/CH/CHI5-D/CHI591Q.Seq.d/                        981   0.0
CHH250 (CHH250Q) /CSM/CH/CHH2-C/CHH250Q.Seq.d/                        981   0.0
CHG649 (CHG649Q) /CSM/CH/CHG6-C/CHG649Q.Seq.d/                        981   0.0
AHM343 (AHM343Q) /CSM/AH/AHM3-B/AHM343Q.Seq.d/                        981   0.0
AHD276 (AHD276Q) /CSM/AH/AHD2-D/AHD276Q.Seq.d/                        981   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    36   4e-06  12
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36   8e-06  14
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   2e-05  19
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    30   6e-05  15
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           34   1e-04  25
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    32   1e-04  19
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   3e-04  13
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   3e-04  17
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   3e-04  18
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    32   7e-04  32
dna update 2005. 4.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000159_2186(CP000159|pid:none) Salinibacter ruber DSM 13855, c...    85   6e-15
CP000749_3181(CP000749|pid:none) Marinomonas sp. MWYL1, complete...    85   6e-15
CP000031_1918(CP000031|pid:none) Silicibacter pomeroyi DSS-3, co...    84   7e-15
CP000749_3891(CP000749|pid:none) Marinomonas sp. MWYL1, complete...    83   2e-14
AP008215_97(AP008215|pid:none) Oryza sativa (japonica cultivar-g...    82   3e-14
AE014297_3790(AE014297|pid:none) Drosophila melanogaster chromos...    81   8e-14
CP000514_294(CP000514|pid:none) Marinobacter aquaeolei VT8, comp...    81   8e-14
CP001337_1104(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    81   8e-14
EU957449_1(EU957449|pid:none) Zea mays clone 1592634 sulfate tra...    80   1e-13
BT061916_1(BT061916|pid:none) Zea mays full-length cDNA clone ZM...    80   1e-13
protein update 2009. 4. 8
PSORT 

 psg: 0.52  gvh: 0.26  alm: 0.31  top: 0.60  tms: 0.20  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 16.0 %: vacuolar
	 16.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHM244 is pla
5' end seq. ID CHM244F
5' end seq. 
>CHM244F.Seq
TTATAAAAAACAAAACAAAACAAAAATAAAAAAAAATACACTCAAATATTATTTATTTAT
TTATTTATTAATAATTAACAAATGGGAGACCATTTAAAAAATACAAGAGAATGGATAAGA
CATTCATCAAATAAAGACGATGGTAATAATGCAGAAAAAACTCACTTTTTTGGTCATCAC
GAAGAANAAGATCATGAACATATGTTATTTACCAAAGAAGAATTAACAAATCCAAAAGAA
TTGGCTAAAGCAATGAAAGTTAAAATTCCACTTTATGTACCAATTTTTAATTGGATTAAA
TCATATTCAAAAGAAGATTTAATTGGTGATATATTATCATCAATTACAGTAGCAACAATG
TTAGTACCACAAGGTTTAGCATATGCAGTATTAGCAGGATTACCAGCTATTTATGGTTTA
TATAGNGGTTGGTTACCATTGGTTATCTATTCATTTATGGGTGGATGTAAACAATTAGCC
GTTGGACCAGAAGCATTATTATCAGTATTATTGGGATCAATTTTANNNNNNNNNN
Length of 5' end seq. 535
3' end seq. ID CHM244Z
3' end seq. 
>CHM244Z.Seq
NNNNNNNNNNTTCGTATCGATGAAGTACTCTACTTTGCAAATATTGGTCAATTCAAACAA
TTACTCTCAGAGATTGAACGTATGATGGATAGATCAACCAATGTAACCGGTAGTGGTTCT
ACTCCACTTCAATCAATCATTATCAATGTTGTCAATATTCCTGTAATGGATGCTTCTGCT
CTACTAACTATTGAAGAGATGGTTACTGCCTATCATAAACGTAATGTAAAGGTTGCCTTT
GTTCAAATGAGTGAAAAGATTAAGGAATCTTTCAAACAATCTGGTCTTTACGATATTGTA
ACACCTCAATTCATTTTCGATATTAATTATGAAGCTGTCTCATTCTTGGAACAAAGTATA
AACNTATAGTAATAATAATGATTCAAGACAAGTAAACTTAAATATGCCACAAAGTGATCA
ATCTTATGATGATTTAAATAATAATGAGGTTGGTGGTTTTGATCAACCATCTTCTTCATC
ATCTTCACGTTTTAATAATCAAAATTTTTTAAACAAAAATAATGATAATAATAATAATAA
TAATAATAATAACAATGATAATAATATTAACGATGATGATTATCAAAATTCTTATAATAA
TAATAATAATAATGGTGGTGGTGCAATCCTTTCTGAGGTTTAAAATTAGAGGATTACAGG
AACCAGAATCTGAGAATTCATTCAAAGTTCAAATCAAAAATCAAAGAAAT
Length of 3' end seq. 710
Connected seq. ID CHM244P
Connected seq. 
>CHM244P.Seq
TTATAAAAAACAAAACAAAACAAAAATAAAAAAAAATACACTCAAATATTATTTATTTAT
TTATTTATTAATAATTAACAAATGGGAGACCATTTAAAAAATACAAGAGAATGGATAAGA
CATTCATCAAATAAAGACGATGGTAATAATGCAGAAAAAACTCACTTTTTTGGTCATCAC
GAAGAANAAGATCATGAACATATGTTATTTACCAAAGAAGAATTAACAAATCCAAAAGAA
TTGGCTAAAGCAATGAAAGTTAAAATTCCACTTTATGTACCAATTTTTAATTGGATTAAA
TCATATTCAAAAGAAGATTTAATTGGTGATATATTATCATCAATTACAGTAGCAACAATG
TTAGTACCACAAGGTTTAGCATATGCAGTATTAGCAGGATTACCAGCTATTTATGGTTTA
TATAGNGGTTGGTTACCATTGGTTATCTATTCATTTATGGGTGGATGTAAACAATTAGCC
GTTGGACCAGAAGCATTATTATCAGTATTATTGGGATCAATTTTA----------TTCGT
ATCGATGAAGTACTCTACTTTGCAAATATTGGTCAATTCAAACAATTACTCTCAGAGATT
GAACGTATGATGGATAGATCAACCAATGTAACCGGTAGTGGTTCTACTCCACTTCAATCA
ATCATTATCAATGTTGTCAATATTCCTGTAATGGATGCTTCTGCTCTACTAACTATTGAA
GAGATGGTTACTGCCTATCATAAACGTAATGTAAAGGTTGCCTTTGTTCAAATGAGTGAA
AAGATTAAGGAATCTTTCAAACAATCTGGTCTTTACGATATTGTAACACCTCAATTCATT
TTCGATATTAATTATGAAGCTGTCTCATTCTTGGAACAAAGTATAAACNTATAGTAATAA
TAATGATTCAAGACAAGTAAACTTAAATATGCCACAAAGTGATCAATCTTATGATGATTT
AAATAATAATGAGGTTGGTGGTTTTGATCAACCATCTTCTTCATCATCTTCACGTTTTAA
TAATCAAAATTTTTTAAACAAAAATAATGATAATAATAATAATAATAATAATAATAACAA
TGATAATAATATTAACGATGATGATTATCAAAATTCTTATAATAATAATAATAATAATGG
TGGTGGTGCAATCCTTTCTGAGGTTTAAAATTAGAGGATTACAGGAACCAGAATCTGAGA
ATTCATTCAAAGTTCAAATCAAAAATCAAAGAAAT
Length of connected seq. 1225
Full length Seq ID -
Full length Seq. -
Length of full length seq. -