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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM237
Library CH
(Link to library)
Clone ID CHM237
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHM237P
(Link to Original site)
Representative DNA sequence 
>CHM237 (CHM237Q) /CSM/CH/CHM2-B/CHM237Q.Seq.d/
ATTGTTATTAAAATTTAAAATTTTTATATTAGATGATAAGTAATAGTATTAATGTAACTC
CAAATAAAGAGTCAAAGATGTATGTTGTAAAAAGAGATGGTACAAAAGAAAATGTATCAT
TTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATGGAACCAAAATTAAATTCAG
ATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATTTCCAGGTGTAA
AGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGTCAACACGTCATC
CAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATAAACAAACTTCAA
AGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAAAGAGCAATTTAT
TGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATGGTGAGAGATTGG
AGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTCTTTGGATTCAAAACATTGG
AACGTTCCTATCTTCATCGTATCAATXXXXXXXXXXTTTACGTAATTCACTCCTCATTGC
ACCAATGCCAACCGCTTCAACAAGTCAAATCCTTGGTAACAATGAATGCTTTGAACCTTA
CACTTCCAACATTTACAGTCGTCGTGTTTTAGCAGGTGAATTCACAATTGTCAACAAACA
ATTACTCGAAGATCTCATGGAATTGGGCATTGGTCACCAGAGATGAAGAATCAAATCGTT
GCTGCACGTGGTTCCATTCAATCCATCGGTGGCATCCCTGATGATTTGAAAGAACTCTAT
AAAACAGTTTGGGAAATCCGTCAAAGAACTCTCATCGATATGGCTGCTGATCGTGGTGCT
TTCATCGATCAAAGTCAAAGTTTCAATGTTTTCATTGCTGAACCAACCTTTGCTAAACTC
ACCTCAATGCATTTCTACTCATGGAAGAAAGGTTTAAAGACTGGTATGTACTATCTTCGT
ACTCGTCCTGCCGCTGATGCAATTCAATTCACTGTTGATCCAATCGTATCTCAAACTCCA
AAACCAGTTGGAAATAATATAAACTCAACTACACCACTTAAAACTCCAACTAAAACTCCA
AACTCTTCAAATCGTATCTCTACTAGTCCAACTAATAATTTAACAAGTCCAATTCGTTTT
AATATAACCCAACAACAACAACAACAACAACAACAACAACAACAACAAAATAATAAGAAG
A
sequence update 2002.10.25
Translated Amino Acid sequence 
cy*nlkfly*MISNSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSD
IVDPIEVAQKVVSGVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQTSK
SFVETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLE
RSYLHRIN---

---LRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTIVNKQLLEDLMELG
IGHQR*riksllhvvpfnpsvaslmi*knsikqfgksvkelssiwllivvlssikvkvsm
fsllnqpllnspqcisthgrkv*rlvctifvlvlplmqfnslliqsylklqnqleii*tq
lhhlklqlklqtlqivsllvqlii*qvqfvli*pnnnnnnnnnnnnkiirr
Translated Amino Acid sequence (All Frames) 
Frame A:
iviki*nfyir**vivlm*lqiksqrcml*kemvqkkmyhliklhqefhfyvkwnqn*iq
i*liqlk*hkk*lveyfqv*rlqnwiiwqprqqhicqhviqimvfwqhvlvyrifinklq
rvl*rqlrnnmnsliqraiywhhwsarssmks**nmvrdwrvsliiivisitisldskhw
nvpifivs---

---ft*ftphctnanrfnksnpw*q*ml*tlhfqhlqsscfsr*ihncqqtitrrshgig
hwspemknqivaargsiqsiggipddlkelyktvweirqrtlidmaadrgafidqsqsfn
vfiaeptfakltsmhfyswkkglktgmyylrtrpaadaiqftvdpivsqtpkpvgnnins
ttplktptktpnssnristsptnnltspirfnitqqqqqqqqqqqqqnnkk

Frame B:
lllkfkifilddk**y*cnsk*rvkdvcckkrwykrkcii**nyiknfifm*ngtkikfr
ys*sn*sstkss*wsisrckdyrig*fgsrdssiyvntssrlwyfgsty*ciess*tnfk
efcrds*eti*ih*skeqfigtigqqgal*nrnetw*eigech*lls*frlrflwiqnig
tflsssyq---

---LRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTIVNKQLLEDLMELG
IGHQR*riksllhvvpfnpsvaslmi*knsikqfgksvkelssiwllivvlssikvkvsm
fsllnqpllnspqcisthgrkv*rlvctifvlvlplmqfnslliqsylklqnqleii*tq
lhhlklqlklqtlqivsllvqlii*qvqfvli*pnnnnnnnnnnnnkiirr

Frame C:
cy*nlkfly*MISNSINVTPNKESKMYVVKRDGTKENVSFDKITSRISFLCEMEPKLNSD
IVDPIEVAQKVVSGVFPGVKTTELDNLAAETAAYMSTRHPDYGILAARISVSNLHKQTSK
SFVETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFKTLE
RSYLHRIN---

---yvihsslhqcqplqqvkslvtmnalnltlptftvvvf*qvnsqlstnnyskiswnwa
lvtrdeesnrcctwfhsihrwhp**fertl*nslgnpsknshrygc*swcfhrskskfqc
fhc*tnlc*thlnafllmeerfkdwyvlssysscr*cnsihc*snrisnsktswk*ykln
ytt*nsn*nsklfksyly*sn**fnksnsf*ynpttttttttttttk**e
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM237 (CHM237Q) /CSM/CH/CHM2-B/CHM237Q.Seq.d/                       2337   0.0
AHH619 (AHH619Q) /CSM/AH/AHH6-A/AHH619Q.Seq.d/                       1421   0.0
CHS380 (CHS380Q) /CSM/CH/CHS3-D/CHS380Q.Seq.d/                       1233   0.0
CFJ351 (CFJ351Q) /CSM/CF/CFJ3-C/CFJ351Q.Seq.d/                       1233   0.0
CFF294 (CFF294Q) /CSM/CF/CFF2-D/CFF294Q.Seq.d/                       1233   0.0
AHO819 (AHO819Q) /CSM/AH/AHO8-A/AHO819Q.Seq.d/                       1233   0.0
AHH450 (AHH450Q) /CSM/AH/AHH4-C/AHH450Q.Seq.d/                       1233   0.0
AHF559 (AHF559Q) /CSM/AH/AHF5-C/AHF559Q.Seq.d/                       1233   0.0
AHB637 (AHB637Q) /CSM/AH/AHB6-B/AHB637Q.Seq.d/                       1233   0.0
SHK696 (SHK696Q) /CSM/SH/SHK6-D/SHK696Q.Seq.d/                       1231   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL440930|AL440930.1 T7 end of clone BD0AA015G01 of library BD0AA from strain CBS 94 of Candida tropicalis.    70   1e-21  4
AJ390500|AJ390500.1 Candida albicans partial mRNA for ribonucleotide reductase large subunit (rnr1 gene).    64   3e-18  4
AX489294|AX489294.1 Sequence 6594 from Patent WO02053728.          64   3e-18  4
AR548770|AR548770.1 Sequence 3901 from patent US 6747137.          64   3e-18  4
AW334328|AW334328.1 S33D5 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52   4e-16  4
X65116|X65116.1 S.pombe cdc22+ gene for ribonucleotide reductase large subunit.    52   7e-16  5
BT008573|BT008573.1 Arabidopsis thaliana clone U09140 putative ribonucleoside-diphosphate reductase large subunit (At2g21790) mRNA, complete cds.    88   4e-15  2
AF092841|AF092841.1 Arabidopsis thaliana ribonucleoside-diphosphate reductase large subunit mRNA, complete cds.    88   4e-15  2
AY035080|AY035080.1 Arabidopsis thaliana putative ribonucleoside-diphosphate reductase large subunit (At2g21790) mRNA, complete cds.    88   5e-15  2
AW333566|AW333566.1 S23D1 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    48   7e-14  4
dna update 2005. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Q71) RecName: Full=Ribonucleoside-diphosphate reductase larg...   318   3e-85
CR954201_10(CR954201|pid:none) Ostreococcus tauri strain OTTH059...   161   1e-62
AF092841_1(AF092841|pid:none) Arabidopsis thaliana ribonucleosid...   159   8e-62
AP004240_6(AP004240|pid:none) Oryza sativa Japonica Group genomi...   156   1e-61
AM437010_1(AM437010|pid:none) Vitis vinifera contig VV78X108426....   161   3e-61
AF118785_1(AF118785|pid:none) Glycine max ribonucleotide reducta...   158   5e-61
CP001102_479(CP001102|pid:none) Candidatus Amoebophilus asiaticu...   157   1e-59
CU638744_79(CU638744|pid:none) Podospora anserina genomic DNA ch...   161   8e-59
AM270068_2(AM270068|pid:none) Aspergillus niger contig An04c0070...   178   2e-58
AM920437_1772(AM920437|pid:none) Penicillium chrysogenum Wiscons...   178   3e-57
protein update 2009. 4. 8
PSORT 

 psg: 0.79  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for CHM237 is cyt
5' end seq. ID CHM237F
5' end seq. 
>CHM237F.Seq
ATTGTTATTAAAATTTAAAATTTTTATATTAGATGATAAGTAATAGTATTAATGTAACTC
CAAATAAAGAGTCAAAGATGTATGTTGTAAAAAGAGATGGTACAAAAGAAAATGTATCAT
TTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATGGAACCAAAATTAAATTCAG
ATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATTTCCAGGTGTAA
AGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGTCAACACGTCATC
CAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATAAACAAACTTCAA
AGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAAAGAGCAATTTAT
TGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATGGTGAGAGATTGG
AGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTCTTTGGATTCAAAACATTGG
AACGTTCCTATCTTCATCGTATCAATNNNNNNNNNN
Length of 5' end seq. 576
3' end seq. ID CHM237Z
3' end seq. 
>CHM237Z.Seq
NNNNNNNNNNTTTACGTAATTCACTCCTCATTGCACCAATGCCAACCGCTTCAACAAGTC
AAATCCTTGGTAACAATGAATGCTTTGAACCTTACACTTCCAACATTTACAGTCGTCGTG
TTTTAGCAGGTGAATTCACAATTGTCAACAAACAATTACTCGAAGATCTCATGGAATTGG
GCATTGGTCACCAGAGATGAAGAATCAAATCGTTGCTGCACGTGGTTCCATTCAATCCAT
CGGTGGCATCCCTGATGATTTGAAAGAACTCTATAAAACAGTTTGGGAAATCCGTCAAAG
AACTCTCATCGATATGGCTGCTGATCGTGGTGCTTTCATCGATCAAAGTCAAAGTTTCAA
TGTTTTCATTGCTGAACCAACCTTTGCTAAACTCACCTCAATGCATTTCTACTCATGGAA
GAAAGGTTTAAAGACTGGTATGTACTATCTTCGTACTCGTCCTGCCGCTGATGCAATTCA
ATTCACTGTTGATCCAATCGTATCTCAAACTCCAAAACCAGTTGGAAATAATATAAACTC
AACTACACCACTTAAAACTCCAACTAAAACTCCAAACTCTTCAAATCGTATCTCTACTAG
TCCAACTAATAATTTAACAAGTCCAATTCGTTTTAATATAACCCAACAACAACAACAACA
ACAACAACAACAACAACAACAAAATAATAAGAAGA
Length of 3' end seq. 695
Connected seq. ID CHM237P
Connected seq. 
>CHM237P.Seq
ATTGTTATTAAAATTTAAAATTTTTATATTAGATGATAAGTAATAGTATTAATGTAACTC
CAAATAAAGAGTCAAAGATGTATGTTGTAAAAAGAGATGGTACAAAAGAAAATGTATCAT
TTGATAAAATTACATCAAGAATTTCATTTTTATGTGAAATGGAACCAAAATTAAATTCAG
ATATAGTTGATCCAATTGAAGTAGCACAAAAAGTAGTTAGTGGAGTATTTCCAGGTGTAA
AGACTACAGAATTGGATAATTTGGCAGCCGAGACAGCAGCATATATGTCAACACGTCATC
CAGATTATGGTATTTTGGCAGCACGTATTAGTGTATCGAATCTTCATAAACAAACTTCAA
AGAGTTTTGTAGAGACAGTTAAGAAACAATATGAATTCATTAATCCAAAGAGCAATTTAT
TGGCACCATTGGTCAGCAAGGAGCTCTATGAAATCGTAATGAAACATGGTGAGAGATTGG
AGAGTGTCATTGATTATTATCGTGATTTCGATTACGATTTCTTTGGATTCAAAACATTGG
AACGTTCCTATCTTCATCGTATCAAT----------TTTACGTAATTCACTCCTCATTGC
ACCAATGCCAACCGCTTCAACAAGTCAAATCCTTGGTAACAATGAATGCTTTGAACCTTA
CACTTCCAACATTTACAGTCGTCGTGTTTTAGCAGGTGAATTCACAATTGTCAACAAACA
ATTACTCGAAGATCTCATGGAATTGGGCATTGGTCACCAGAGATGAAGAATCAAATCGTT
GCTGCACGTGGTTCCATTCAATCCATCGGTGGCATCCCTGATGATTTGAAAGAACTCTAT
AAAACAGTTTGGGAAATCCGTCAAAGAACTCTCATCGATATGGCTGCTGATCGTGGTGCT
TTCATCGATCAAAGTCAAAGTTTCAATGTTTTCATTGCTGAACCAACCTTTGCTAAACTC
ACCTCAATGCATTTCTACTCATGGAAGAAAGGTTTAAAGACTGGTATGTACTATCTTCGT
ACTCGTCCTGCCGCTGATGCAATTCAATTCACTGTTGATCCAATCGTATCTCAAACTCCA
AAACCAGTTGGAAATAATATAAACTCAACTACACCACTTAAAACTCCAACTAAAACTCCA
AACTCTTCAAATCGTATCTCTACTAGTCCAACTAATAATTTAACAAGTCCAATTCGTTTT
AATATAACCCAACAACAACAACAACAACAACAACAACAACAACAACAAAATAATAAGAAG
A
Length of connected seq. 1251
Full length Seq ID -
Full length Seq. -
Length of full length seq. -