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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM231
Library CH
(Link to library)
Clone ID CHM231
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHM231P
(Link to Original site)
Representative DNA sequence 
>CHM231 (CHM231Q) /CSM/CH/CHM2-B/CHM231Q.Seq.d/
AAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATTC
ATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATA
TGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATT
GTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGA
TTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGA
TGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTT
TGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGT
TTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCC
ATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGT
TGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTAC
TCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATTTACCGA
TXXXXXXXXXXGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAG
GTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAAC
AAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTG
GTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTT
CAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTAT
CCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAA
TTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTC
ATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTT
TTACTTCTTCTGATGCTGGGGTTATTATTTTAAGGTTGTTCATTGGNATTATTCCAAAAA
AATAAAAAATAAAAAAATATA
sequence update 2002.10.25
Translated Amino Acid sequence 
niyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYDQRILALKGKCYLDSNKNAL
YDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKDYYF
ETYEKTLACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSILTVRISV
DLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTD---

---EGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVG
RVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVI
PVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGVIILRLFIGIIPKK
*kikky
Translated Amino Acid sequence (All Frames) 
Frame A:
kyiy*yiliy*y**neniifiiinikynfkycikyfitsi*styfgikrkmlfrfk*kci
v**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*winstynl*iyiyqskrlll
*nl*kdiglstrctmyssngfs**fgsrsfsckylcl*hsid*tswcfirliytys*n*c
*fglc*ansttnsttysttysttntstiyw*crrwfiiyr---

---EGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQYRVG
RVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNYYCVI
PVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGVIILRLFIGIIPKK
*kikky

Frame B:
niyiniy*YININKMKILYSLLLISSIILNTVLNISSQVYDQRILALKGKCYLDSNKNAL
YDEGEPGFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKDYYF
ETYEKTLACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSILTVRISV
DLGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTD---

---kvqfvgimqplvnn*kvtlyi*plqmvvphlqplvnkmvlvillqcmillfhnivlv
efgli*mvmvfkmlvnlvfqesqys*smvnnqlqqvklypiqmvisnlklisvqiiiv*f
llhssklvlplq*emliqliqiqivmlsyqllimfmsllllllmlgllf*gcslxlfqkn
kk*kni

Frame C:
iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*kenvi*iqikmhc
mmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhlpiqkiitl
kpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*lnklvfhqahlylqlelvl
iwvmlsklnhqlnhllnhllnhqhlhhllvvpslvyylp---

---rfnslv*cnlw*ttkrllfiynlfkwsypisnlw*tkwsw*yyfsv*ffsstiscw*
sla*ykw*wysrcw*twyfrnhsilnlwstinsnksncirfkwlfqi*s*fqfklllcns
ccilpswffhynekc*snsskyk**cflinc**clchffyff*cwgyyfkvvhwxyskki
knkki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL883 (SHL883Q) /CSM/SH/SHL8-D/SHL883Q.Seq.d/                       1128   0.0
SHL845 (SHL845Q) /CSM/SH/SHL8-B/SHL845Q.Seq.d/                       1128   0.0
SHL741 (SHL741Q) /CSM/SH/SHL7-B/SHL741Q.Seq.d/                       1128   0.0
SHL696 (SHL696Q) /CSM/SH/SHL6-D/SHL696Q.Seq.d/                       1128   0.0
SHL536 (SHL536Q) /CSM/SH/SHL5-B/SHL536Q.Seq.d/                       1128   0.0
SHL461 (SHL461Q) /CSM/SH/SHL4-C/SHL461Q.Seq.d/                       1128   0.0
SHL458 (SHL458Q) /CSM/SH/SHL4-C/SHL458Q.Seq.d/                       1128   0.0
SHL429 (SHL429Q) /CSM/SH/SHL4-B/SHL429Q.Seq.d/                       1128   0.0
SHL313 (SHL313Q) /CSM/SH/SHL3-A/SHL313Q.Seq.d/                       1128   0.0
SHL265 (SHL265Q) /CSM/SH/SHL2-C/SHL265Q.Seq.d/                       1128   0.0
own update 2002.10. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    62   3e-05  1
AF066073|AF066073.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds.    62   3e-05  1
AF066071|AF066071.1 Dictyostelium discoideum SP85 (pspB) gene, complete cds.    62   3e-05  2
CK808839|CK808839.1 Rasgsc1686 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    34   3e-05  4
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    48   4e-05  15
CK808739|CK808739.1 Rasgsc1529 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    32   4e-04  4
S72639|S72639.1 PspB=prespore-specific gene {5' region} [Dictyostelium discoideum, Genomic, 1918 nt].    58   4e-04  1
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    58   4e-04  1
AF066072|AF066072.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds.    58   4e-04  2
CK808037|CK808037.1 Rasgsc0316 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence.    34   0.001  4
dna update 2005. 4.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    63   2e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    61   9e-08
CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    60   1e-07
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    59   3e-07
(Q9KI14) RecName: Full=Serine-aspartate repeat-containing protei...    51   7e-05
AY458641_15(AY458641|pid:none) Uncultured marine bacterium 463 c...    51   9e-05
CP000686_4190(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    51   9e-05
CP000686_1034(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    50   2e-04
CP000284_2387(CP000284|pid:none) Methylobacillus flagellatus KT,...    49   3e-04
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    49   3e-04
protein update 2009. 4. 8
PSORT 

 psg: 0.95  gvh: 0.59  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.56  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for CHM231 is end
5' end seq. ID CHM231F
5' end seq. 
>CHM231F.Seq
AAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATTC
ATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATA
TGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATT
GTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGA
TTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGA
TGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTT
TGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGT
TTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCC
ATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGT
TGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTAC
TCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATTTACCGA
TNNNNNNNNNN
Length of 5' end seq. 671
3' end seq. ID CHM231Z
3' end seq. 
>CHM231Z.Seq
NNNNNNNNNNGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGG
TTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACA
AAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGG
TAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTC
AGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTATC
CGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAAT
TCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTCA
TCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTTT
TACTTCTTCTGATGCTGGGGTTATTATTTTAAGGTTGTTCATTGGNATTATTCCAAAAAA
ATAAAAAATAAAAAAATATA
Length of 3' end seq. 560
Connected seq. ID CHM231P
Connected seq. 
>CHM231P.Seq
AAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATTATATTC
ATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATA
TGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATT
GTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGA
TTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGA
TGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTT
TGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGT
TTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCC
ATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGT
TGATTTGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTAC
TCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATTTACCGA
T----------GAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAAG
GTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAAC
AAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTTG
GTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATTT
CAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTAT
CCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAA
TTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACTC
ATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCTT
TTACTTCTTCTGATGCTGGGGTTATTATTTTAAGGTTGTTCATTGGNATTATTCCAAAAA
AATAAAAAATAAAAAAATATA
Length of connected seq. 1211
Full length Seq ID -
Full length Seq. -
Length of full length seq. -