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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM219
Library CH
(Link to library)
Clone ID CHM219
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11840-1
Original site URL
Representative seq. ID CHM219P
(Link to Original site)
Representative DNA sequence 
>CHM219 (CHM219Q) /CSM/CH/CHM2-A/CHM219Q.Seq.d/
TTTTTTGGTCATATTTTTATATCAGTTTATCACCAAATATAGCAATAGGATGTGTATGGC
CACCATATGGATTAACAGTATATTCATATATGGGATTACCATTATTAAATACAGTATTAT
TATTACTATCTGGAGCAATATTAACAGATGGTTATACAATATTAACCGAACAAAAAGCGG
TACATGAAAAGAACGAAAAAGTATTAGCAGTAGAAGAAGCATTTAAAAATTTAATGAATT
TATATAAAACAAAAAACAGTATAAATACATTAACCTTTGTAGATGAAAGAAGAGACAAAT
TTTTTGGAAAAGAAAGTAGACAAGAGGACAAGATTGCAGAACAAAAATTAATAGCAATAT
CAGCAGGAGTAAAAGAAXXXXXXXXXXACTAGAGAGACATTCACAATATTTATTAAAGAG
AAAAGAAAATTATAATCCTAAGCAACCACAAATATTGGAAACGGATTCGAGATCCGAACA
TTATTTAATGAATTATTTTTATTATAATAAACTCGAAAATGTTTTAGAGAAAAAAGAAGG
AATAGATGATGCTGAAGTTTATAAGTTTATAAAATTAGATTTTGGTGAAAAAATGGAGTT
AAAATTAGAGAAATTTTATGATCTGAATAGAGAAAGAAGATTCCGAGTAAAAAAATTAAG
CCAATCAAAACTATATGAGTTTGAAAAAGCTGCATTGAAAGGTATTGGTTTTGATTGTTT
TATGCTTATAGTAGGAATAATCATATTTTTAGCATCTTCTCCATATTTATTTTCACAATT
ACCTTGGAGAGTAAAATATTCGCTTCATAATACTTGGTATCATAATCTACTTGAAGTCAT
AGATGTACTTTTTAGTATGCCTAAAGTAATAAACTTAGAATGGCTATATTTACAAGCTAT
GTGGGAGGGAGAACTGACAGTACTAAAGATAAGAGGTGGTATATCAGTCCTTACCGCAAT
AGAAACTATTATGTCTGTAATGTCTAACTATAAAGATTTATCCCAGACATCCCAGATAAT
AAATTACTTAGCAAATTTTAGTTTNACATATATTAATTTATGTCAAACT
sequence update 2002.10.25
Translated Amino Acid sequence 
FWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAV
HEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAIS
AGVKE---

---LERHSQYLLKRKENYNPKQPQILETDSRSEHYLMNYFYYNKLENVLEKKEGIDDAEV
YKFIKLDFGEKMELKLEKFYDLNRERRFRVKKLSQSKLYEFEKAALKGIGFDCFMLIVGI
IIFLASSPYLFSQLPWRVKYSLHNTWYHNLLEVIDVLFSMPKVINLEWLYLQAMWEGELT
VLKIRGGISVLTAIETIMSVMSNYKDLSQTSQIINYLANFSXTYINLCQT
Translated Amino Acid sequence (All Frames) 
Frame A:
ffghifisvyhqi*q*dvyghhmd*qyihiwdyhy*iqyyyyyleqy*qmviqy*pnkkr
ymkrtkky*q*kkhlki**iyikqktv*ih*pl*mkeetnflekkvdkrtrlqnkn**qy
qqe*k---

---tretftifikekrkl*s*attnigngfeirtlfnelfll**trkcfrekrrnr*c*s
l*vykirfw*kngvkireil*se*rkkipskkikpikti*v*kscierywf*lfyaysrn
nhifsifsififtitleskifas*ylvs*st*shrctf*ya*snklrmaiftsyvggrtd
stkdkrwyispyrnrnyyvcnv*l*rfipdipdnkllskf*fxiy*fmsn

Frame B:
flviflyqfitkysnrmcmatiwinsifiygitiikysiiitiwsninrwlyninrtksg
t*kerksissrrsi*kfnefi*nkkqykyinlcr*kkrqifwkrk*trgqdcrtkinsni
srskr---

---LERHSQYLLKRKENYNPKQPQILETDSRSEHYLMNYFYYNKLENVLEKKEGIDDAEV
YKFIKLDFGEKMELKLEKFYDLNRERRFRVKKLSQSKLYEFEKAALKGIGFDCFMLIVGI
IIFLASSPYLFSQLPWRVKYSLHNTWYHNLLEVIDVLFSMPKVINLEWLYLQAMWEGELT
VLKIRGGISVLTAIETIMSVMSNYKDLSQTSQIINYLANFSXTYINLCQT

Frame C:
FWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAV
HEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAIS
AGVKE---

---*rdihniy*rekkiiilsnhkywkrirdpnii**iifiiinskmf*rkkke*mmlkf
isl*n*ilvkkws*n*rnfmi*iekedse*kn*anqnymslkklh*kvlvlivlcl**e*
syf*hllhiyfhnylge*nirfiilgiiiylks*myflvclk**t*ngyiyklcgren*q
y*r*evvyqslpq*kllcl*cltikiyprhpr**it*qilvxhiliyvk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM219 (CHM219Q) /CSM/CH/CHM2-A/CHM219Q.Seq.d/                       2012   0.0
VHK641 (VHK641Q) /CSM/VH/VHK6-B/VHK641Q.Seq.d/                       1304   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/              1291   0.0
VHI704 (VHI704Q) /CSM/VH/VHI7-A/VHI704Q.Seq.d/                       1185   0.0
VFC706 (VFC706Q) /CSM/VF/VFC7-A/VFC706Q.Seq.d/                       1017   0.0
AFD890 (AFD890Q) /CSM/AF/AFD8-D/AFD890Q.Seq.d/                       1015   0.0
VSH322 (VSH322Q) /CSM/VS/VSH3-A/VSH322Q.Seq.d/                        747   0.0
VSH272 (VSH272Q) /CSM/VS/VSH2-C/VSH272Q.Seq.d/                        747   0.0
VSE831 (VSE831Q) /CSM/VS/VSE8-B/VSE831Q.Seq.d/                        747   0.0
VFC894 (VFC894Q) /CSM/VF/VFC8-D/VFC894Q.Seq.d/                        747   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16579|D16579.1 Dictyostelium discoideum mitochondrial DNA for NADH dehydrogenase subunits and cytochrome oxidase subunit ,complete cds.   771   0.0    2
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   771   0.0    3
AY700145|AY700145.1 Polysphondylium pallidum mitochondrion DNA, complete sequence.   103   9e-35  2
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    38   7e-12  29
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   3e-11  22
CR382401|CR382401.1 Plasmodium falciparum chromosome 6, complete sequence; segment 4/5.    40   4e-11  22
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   1e-10  23
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     40   2e-10  23
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             40   2e-10  23
BA000003|BA000003.2 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence.    40   2e-10  23
dna update 2005. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O21050) RecName: Full=Uncharacterized mitochondrial protein Mp0...   439   e-122
DQ336395_5(DQ336395|pid:none) Dictyostelium citrinum mitochondri...   172   2e-41
(Q2LCQ0) RecName: Full=Uncharacterized mitochondrial protein Mp0...   172   2e-41
AY700145_33(AY700145|pid:none) Polysphondylium pallidum mitochon...   106   1e-21
EU275726_4(EU275726|pid:none) Polysphondylium pallidum strain PN...   105   3e-21
EU275727_5(EU275727|pid:none) Dictyostelium fasciculatum strain ...    95   4e-18
AY521262_12(AY521262|pid:none) Tetraleurodes acaciae mitochondri...    50   1e-04
(P48891) RecName: Full=Cytochrome c oxidase subunit 3;          ...    50   1e-04
AF084526_1(AF084526|pid:none) Physarum polycephalum cytochrome o...    47   8e-04
DQ241798_6(DQ241798|pid:none) Sclerophasma paresisensis mitochon...    47   0.001
protein update 2009. 4. 8
PSORT 

 psg: 0.91  gvh: 0.67  alm: 0.19  top: 0.43  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.05  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for CHM219 is exc
5' end seq. ID CHM219F
5' end seq. 
>CHM219F.Seq
TTTTTTGGTCATATTTTTATATCAGTTTATCACCAAATATAGCAATAGGATGTGTATGGC
CACCATATGGATTAACAGTATATTCATATATGGGATTACCATTATTAAATACAGTATTAT
TATTACTATCTGGAGCAATATTAACAGATGGTTATACAATATTAACCGAACAAAAAGCGG
TACATGAAAAGAACGAAAAAGTATTAGCAGTAGAAGAAGCATTTAAAAATTTAATGAATT
TATATAAAACAAAAAACAGTATAAATACATTAACCTTTGTAGATGAAAGAAGAGACAAAT
TTTTTGGAAAAGAAAGTAGACAAGAGGACAAGATTGCAGAACAAAAATTAATAGCAATAT
CAGCAGGAGTAAAAGAANNNNNNNNNN
Length of 5' end seq. 387
3' end seq. ID CHM219Z
3' end seq. 
>CHM219Z.Seq
NNNNNNNNNNACTAGAGAGACATTCACAATATTTATTAAAGAGAAAAGAAAATTATAATC
CTAAGCAACCACAAATATTGGAAACGGATTCGAGATCCGAACATTATTTAATGAATTATT
TTTATTATAATAAACTCGAAAATGTTTTAGAGAAAAAAGAAGGAATAGATGATGCTGAAG
TTTATAAGTTTATAAAATTAGATTTTGGTGAAAAAATGGAGTTAAAATTAGAGAAATTTT
ATGATCTGAATAGAGAAAGAAGATTCCGAGTAAAAAAATTAAGCCAATCAAAACTATATG
AGTTTGAAAAAGCTGCATTGAAAGGTATTGGTTTTGATTGTTTTATGCTTATAGTAGGAA
TAATCATATTTTTAGCATCTTCTCCATATTTATTTTCACAATTACCTTGGAGAGTAAAAT
ATTCGCTTCATAATACTTGGTATCATAATCTACTTGAAGTCATAGATGTACTTTTTAGTA
TGCCTAAAGTAATAAACTTAGAATGGCTATATTTACAAGCTATGTGGGAGGGAGAACTGA
CAGTACTAAAGATAAGAGGTGGTATATCAGTCCTTACCGCAATAGAAACTATTATGTCTG
TAATGTCTAACTATAAAGATTTATCCCAGACATCCCAGATAATAAATTACTTAGCAAATT
TTAGTTTNACATATATTAATTTATGTCAAACT
Length of 3' end seq. 692
Connected seq. ID CHM219P
Connected seq. 
>CHM219P.Seq
TTTTTTGGTCATATTTTTATATCAGTTTATCACCAAATATAGCAATAGGATGTGTATGGC
CACCATATGGATTAACAGTATATTCATATATGGGATTACCATTATTAAATACAGTATTAT
TATTACTATCTGGAGCAATATTAACAGATGGTTATACAATATTAACCGAACAAAAAGCGG
TACATGAAAAGAACGAAAAAGTATTAGCAGTAGAAGAAGCATTTAAAAATTTAATGAATT
TATATAAAACAAAAAACAGTATAAATACATTAACCTTTGTAGATGAAAGAAGAGACAAAT
TTTTTGGAAAAGAAAGTAGACAAGAGGACAAGATTGCAGAACAAAAATTAATAGCAATAT
CAGCAGGAGTAAAAGAA----------ACTAGAGAGACATTCACAATATTTATTAAAGAG
AAAAGAAAATTATAATCCTAAGCAACCACAAATATTGGAAACGGATTCGAGATCCGAACA
TTATTTAATGAATTATTTTTATTATAATAAACTCGAAAATGTTTTAGAGAAAAAAGAAGG
AATAGATGATGCTGAAGTTTATAAGTTTATAAAATTAGATTTTGGTGAAAAAATGGAGTT
AAAATTAGAGAAATTTTATGATCTGAATAGAGAAAGAAGATTCCGAGTAAAAAAATTAAG
CCAATCAAAACTATATGAGTTTGAAAAAGCTGCATTGAAAGGTATTGGTTTTGATTGTTT
TATGCTTATAGTAGGAATAATCATATTTTTAGCATCTTCTCCATATTTATTTTCACAATT
ACCTTGGAGAGTAAAATATTCGCTTCATAATACTTGGTATCATAATCTACTTGAAGTCAT
AGATGTACTTTTTAGTATGCCTAAAGTAATAAACTTAGAATGGCTATATTTACAAGCTAT
GTGGGAGGGAGAACTGACAGTACTAAAGATAAGAGGTGGTATATCAGTCCTTACCGCAAT
AGAAACTATTATGTCTGTAATGTCTAACTATAAAGATTTATCCCAGACATCCCAGATAAT
AAATTACTTAGCAAATTTTAGTTTNACATATATTAATTTATGTCAAACT
Length of connected seq. 1059
Full length Seq ID -
Full length Seq. -
Length of full length seq. -