>CHM217 (CHM217Q) /CSM/CH/CHM2-A/CHM217Q.Seq.d/
XXXXXXXXXXTTGATCATCTTAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGACAA
AGTTGATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGGTAC
ACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGC
TCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTT
CCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCT
CTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCAT
TCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATG
GGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGG
TCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGC
CTCTGTTGCTGTACTTTTACTTATGGAATCCCTNTNTGCTTTCTTGCACGCTCTTAGACT
TCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGNTAGATTCATTCCATA
CAGTGCCACTCGTATTC

---IILKWVVPYRSFEVDKVDPPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTALLFLAL
ISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVIH
TIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLGAS
VAVLLLMESLXAFLHALRLHWVEFQNKFYIGDGXRFIPYSATRI

Frame A:
---*ss*ngsfhivhlrltklihhsffqplslcschqvvhqmlssslvkvlfkplsyswl
sfpfqlcwslnhcs*rdstskkskern*vttkrnmmmklstlvitvknlkwvkslfiksf
ipsslfwvlfqilplifvyglfhwltlsyllyfgnvfslvksnvvihswlslvlvlg*vp
lllyfylwnpxxlsctlldfig*nskinsilvmvxdsfhtvplvf


Frame B:
---dhlkmgrsisfi*g*qs*stihssnhyryvlvtrwytrcclllwsrccsnrslilgs
hfhssyvgh*tivheeiplprsrkkeirsprrgt***sslhwssr*ri*ng*slcssshs
yhrvcfgccfkycllssfmgsfigsl*vifcilgtyshwssrtw*silgfrwfwclvrcl
ccctftygipxcflars*tslgripk*ilyw*wx*ihsiqchsy


Frame C:
---IILKWVVPYRSFEVDKVDPPFILPTIIAMFLSPGGTPDVVFFSGQGAVQTALLFLAL
ISIPVMLVIKPLFMKRFHFQEVERKKLGHHEEEHDDEALYTGHHGEEFEMGEVFVHQVIH
TIEFVLGAVSNTASYLRLWALSLAHSELSSVFWERILIGQVERGNPFLAFVGFGAWLGAS
VAVLLLMESLXAFLHALRLHWVEFQNKFYIGDGXRFIPYSATRI

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHN293 (VHN293Q) /CSM/VH/VHN2-D/VHN293Q.Seq.d/                       1304   0.0
CHR818 (CHR818Q) /CSM/CH/CHR8-A/CHR818Q.Seq.d/                       1304   0.0
CHR349 (CHR349Q) /CSM/CH/CHR3-C/CHR349Q.Seq.d/                       1304   0.0
CHM217 (CHM217Q) /CSM/CH/CHM2-A/CHM217Q.Seq.d/                       1304   0.0
CHL154 (CHL154Q) /CSM/CH/CHL1-C/CHL154Q.Seq.d/                       1304   0.0
CHH295 (CHH295Q) /CSM/CH/CHH2-D/CHH295Q.Seq.d/                       1304   0.0
CHF322 (CHF322Q) /CSM/CH/CHF3-A/CHF322Q.Seq.d/                       1304   0.0
SHJ838 (SHJ838Q) /CSM/SH/SHJ8-B/SHJ838Q.Seq.d/                       1298   0.0
AFB674 (AFB674Q) /CSM/AF/AFB6-D/AFB674Q.Seq.d/                       1294   0.0
CHG593 (CHG593Q) /CSM/CH/CHG5-D/CHG593Q.Seq.d/                       1292   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U38803|U38803.1 Dictyostelium discoideum vacuolar proton ATPase 100-kDa subunit (vatM) mRNA, complete cds.  1304   0.0    1
BF272276|BF272276.2 GA__Eb0014G21f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0014G21f, mRNA sequence.    72   8e-14  2
BQ853466|BQ853466.1 QGB20J11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB20J11, mRNA sequence.    80   6e-11  1
BU012351|BU012351.1 QGJ1L02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGJ1L02, mRNA sequence.    80   6e-11  1
CV164410|CV164410.1 rsmsxl_003361.y1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   3e-09  3
CV172465|CV172465.1 rsmsxlre_008717.z1.scf cDNA Library of Salvia miltiorrhiza Salvia miltiorrhiza cDNA 5', mRNA sequence.    54   5e-09  3
BQ403487|BQ403487.1 GA__Ed0059H07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0059H07f, mRNA sequence.    72   1e-08  1
CO071051|CO071051.1 GR__Ea28H19.r GR__Ea Gossypium raimondii cDNA clone GR__Ea28H19 3', mRNA sequence.    72   1e-08  1
CO121599|CO121599.1 GR__Eb02N16.r GR__Eb Gossypium raimondii cDNA clone GR__Eb02N16 3', mRNA sequence.    72   1e-08  1
CO099107|CO099107.1 GR__Ea23M21.f GR__Ea Gossypium raimondii cDNA clone GR__Ea23M21 5', mRNA sequence.    72   1e-08  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54E04) RecName: Full=Vacuolar proton translocating ATPase 100 ...   444   e-124
U38803_1(U38803|pid:none) Dictyostelium discoideum vacuolar prot...   444   e-124
AC093568_14(AC093568|pid:none) Oryza sativa chromosome 10 clone ...   207   2e-52
CP000588_396(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   204   2e-51
AK101151_1(AK101151|pid:none) Oryza sativa Japonica Group cDNA c...   202   9e-51
AL035679_18(AL035679|pid:none) Arabidopsis thaliana DNA chromoso...   199   5e-50
AK227321_1(AK227321|pid:none) Arabidopsis thaliana mRNA for hypo...   199   5e-50
AK230210_1(AK230210|pid:none) Arabidopsis thaliana mRNA for hypo...   199   8e-50
CR954208_391(CR954208|pid:none) Ostreococcus tauri strain OTTH05...   199   8e-50
AM494960_175(AM494960|pid:none) Leishmania braziliensis chromoso...   196   7e-49

 psg: 0.49  gvh: 0.56  alm: 0.18  top: 0.77  tms: 0.20  mit: 0.26  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 24.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHM217 is pla

>CHM217Z.Seq
NNNNNNNNNNTTGATCATCTTAAAATGGGTCGTTCCATATCGTTCATTTGAGGTTGACAA
AGTTGATCCACCATTCATTCTTCCAACCATTATCGCTATGTTCTTGTCACCAGGTGGTAC
ACCAGATGTTGTCTTCTTCTCTGGTCAAGGTGCTGTTCAAACCGCTCTCTTATTCTTGGC
TCTCATTTCCATTCCAGTTATGTTGGTCATTAAACCATTGTTCATGAAGAGATTCCACTT
CCAAGAAGTCGAAAGAAAGAAATTAGGTCACCACGAAGAGGAACATGATGATGAAGCTCT
CTACACTGGTCATCACGGTGAAGAATTTGAAATGGGTGAAGTCTTTGTTCATCAAGTCAT
TCATACCATCGAGTTTGTTTTGGGTGCTGTTTCAAATACTGCCTCTTATCTTCGTTTATG
GGCTCTTTCATTGGCTCACTCTGAGTTATCTTCTGTATTTTGGGAACGTATTCTCATTGG
TCAAGTCGAACGTGGTAATCCATTCTTGGCTTTCGTTGGTTTTGGTGCTTGGTTAGGTGC
CTCTGTTGCTGTACTTTTACTTATGGAATCCCTNTNTGCTTTCTTGCACGCTCTTAGACT
TCATTGGGTAGAATTCCAAAATAAATTCTATATTGGTGATGGTGNTAGATTCATTCCATA
CAGTGCCACTCGTATTC