>CHM214 (CHM214Q) /CSM/CH/CHM2-A/CHM214Q.Seq.d/
XXXXXXXXXXTGCTAAAATTTTAGAATCAAATCATACAAGTATGTCATATATTTGTTCAA
GATATTATAGAGCTCCTGAATTATTAGTTGGTTGTTCAAATTATACTACTAAAATTGATA
TTTGGTCAATTGGATGTATTTTAGCAGAAATGTTAATTGGTAAACCATTATTCCCTGGTA
CAAATTCAAATGATCAATTGGGTAGAATTATTGAAGTATTAGGATCACCAACAAAAGATG
ATATGGAAGCAATGAAACCAAGTAAACCATACCATTTACAATTACCAAATATTAATCCAA
AGTTTTTCGAATCATTACATAATGTTGAAGATAAAACAGTTGTTGATTTATTATCAAAAA
TTTTCATTTTTGATCCTGTAAAGAGAGCATCGATTGATGAAATTATTGCACACCCATTTT
TAAGAGATGTAAATATAAATAGTTTAGAATTATTTGATGAAATGAAATGTTTTTCAGTAT
CAGGTAATGGTAAATCATCATTAACAACAAATTCAACTTCATCATCTTCGACAACTGNTA
ATATGACCTCTTTAGCAAGTTCAAGTAGTAATAATAAAACAACTTGCTCTGAAACTTATC
TTTCAAGACTACCAACAAGCGCAATCACAA

---AKILESNHTSMSYICSRYYRAPELLVGCSNYTTKIDIWSIGCILAEMLIGKPLFPGT
NSNDQLGRIIEVLGSPTKDDMEAMKPSKPYHLQLPNINPKFFESLHNVEDKTVVDLLSKI
FIFDPVKRASIDEIIAHPFLRDVNINSLELFDEMKCFSVSGNGKSSLTTNSTSSSSTTXN
MTSLASSSSNNKTTCSETYLSRLPTSAIT

Frame A:
---AKILESNHTSMSYICSRYYRAPELLVGCSNYTTKIDIWSIGCILAEMLIGKPLFPGT
NSNDQLGRIIEVLGSPTKDDMEAMKPSKPYHLQLPNINPKFFESLHNVEDKTVVDLLSKI
FIFDPVKRASIDEIIAHPFLRDVNINSLELFDEMKCFSVSGNGKSSLTTNSTSSSSTTXN
MTSLASSSSNNKTTCSETYLSRLPTSAIT


Frame B:
---lkf*nqiiqvchifvqdiiellny*lvvqiillklifgqldvf*qkc*lvnhyslvq
iqminwvellky*dhqqkmiwkq*nqvnhtiynyqiliqsfsnhyimlkikqlliyyqkf
sflil*rehrlmkllhthf*em*i*iv*nylmk*nvfqyqvmvnhh*qqiqlhhlrqlxi
*pl*qvqvviikqlalklifqdyqqaqsq


Frame C:
---*nfriksykyviylfkil*ss*iiswlfklyy*n*ylvnwmyfsrnvnw*tiipwyk
fk*sig*ny*siritnkr*ygsnetk*tipftitky*skvfriit*c*r*nsc*fiiknf
hf*sckesid**nyctpifkrckyk*frii**nemffsir*w*iiinnkfnfiifdnx*y
dlfskfk****nnll*nlsfkttnkrnh

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM214 (CHM214Q) /CSM/CH/CHM2-A/CHM214Q.Seq.d/                       1223   0.0
CFI791 (CFI791Q) /CSM/CF/CFI7-D/CFI791Q.Seq.d/                       1223   0.0
SHK751 (SHK751Q) /CSM/SH/SHK7-C/SHK751Q.Seq.d/                       1178   0.0
SSG886 (SSG886Q) /CSM/SS/SSG8-D/SSG886Q.Seq.d/                       1124   0.0
CFF280 (CFF280Q) /CSM/CF/CFF2-D/CFF280Q.Seq.d/                        981   0.0
AFF770 (AFF770Q) /CSM/AF/AFF7-C/AFF770Q.Seq.d/                        860   0.0
SSM230 (SSM230Q) /CSM/SS/SSM2-B/SSM230Q.Seq.d/                        674   0.0
SSJ113 (SSJ113Q) /CSM/SS/SSJ1-A/SSJ113Q.Seq.d/                        335   5e-91
VSF501 (VSF501Q) /CSM/VS/VSF5-A/VSF501Q.Seq.d/                        127   2e-28
VFO133 (VFO133Q) /CSM/VF/VFO1-B/VFO133Q.Seq.d/                         46   6e-04

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    34   3e-09  28
M76585|M76585.1 Candida albicans protein kinase (ERK1) gene, complete cds.    62   1e-06  2
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          38   2e-06  21
AC116920|AC116920.3 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    46   4e-06  8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   7e-06  17
L34674|L34674.2 Dictyostelium discoideum glycogen synthase kinase 3 mRNA, complete cds.    46   1e-05  2
AJ758518|AJ758518.1 Gerbera hybrid cv. 'Terra Regina' EST, clone G0000400007C09F1.    60   5e-05  1
AJ759858|AJ759858.1 Gerbera hybrid cv. 'Terra Regina' EST, clone G0000400024D05F1.    60   5e-05  1
AJ758862|AJ758862.1 Gerbera hybrid cv. 'Terra Regina' EST, clone G0000400012E09F1.    60   5e-05  1
BX842644|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 3/4.    32   6e-05  14

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55C57) RecName: Full=Probable serine/threonine-protein kinase ...   335   8e-91
DQ168585_1(DQ168585|pid:none) Magnaporthe grisea glycogen syntha...   144   3e-33
AL451015_6(AL451015|pid:none) Neurospora crassa DNA linkage grou...   142   6e-33
AM920427_455(AM920427|pid:none) Penicillium chrysogenum Wisconsi...   142   1e-32
AM270329_3(AM270329|pid:none) Aspergillus niger contig An15c0020...   142   1e-32
AP007164_22(AP007164|pid:none) Aspergillus oryzae RIB40 genomic ...   140   4e-32
A55476(A55476)protein kinase (EC 2.7.1.37) gskA - slime mold  (D...   140   4e-32
(Q9URT9) RecName: Full=Protein kinase gsk31;          EC=2.7.11....   139   8e-32
AB004538_14(AB004538|pid:none) Schizosaccharomyces pombe 39 kb g...   139   8e-32
CP000498_567(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...   135   7e-31

 psg: 0.87  gvh: 0.54  alm: 0.38  top: 0.63  tms: 0.00  mit: 0.32  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CHM214 is nuc

>CHM214Z.Seq
NNNNNNNNNNTGCTAAAATTTTAGAATCAAATCATACAAGTATGTCATATATTTGTTCAA
GATATTATAGAGCTCCTGAATTATTAGTTGGTTGTTCAAATTATACTACTAAAATTGATA
TTTGGTCAATTGGATGTATTTTAGCAGAAATGTTAATTGGTAAACCATTATTCCCTGGTA
CAAATTCAAATGATCAATTGGGTAGAATTATTGAAGTATTAGGATCACCAACAAAAGATG
ATATGGAAGCAATGAAACCAAGTAAACCATACCATTTACAATTACCAAATATTAATCCAA
AGTTTTTCGAATCATTACATAATGTTGAAGATAAAACAGTTGTTGATTTATTATCAAAAA
TTTTCATTTTTGATCCTGTAAAGAGAGCATCGATTGATGAAATTATTGCACACCCATTTT
TAAGAGATGTAAATATAAATAGTTTAGAATTATTTGATGAAATGAAATGTTTTTCAGTAT
CAGGTAATGGTAAATCATCATTAACAACAAATTCAACTTCATCATCTTCGACAACTGNTA
ATATGACCTCTTTAGCAAGTTCAAGTAGTAATAATAAAACAACTTGCTCTGAAACTTATC
TTTCAAGACTACCAACAAGCGCAATCACAA