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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM190
Library CH
(Link to library)
Clone ID CHM190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15680-1
Original site URL
Representative seq. ID CHM190P
(Link to Original site)
Representative DNA sequence 
>CHM190 (CHM190Q) /CSM/CH/CHM1-D/CHM190Q.Seq.d/
ATTTTTAATTAATCATAGTCAACAAAATGTGTAAATATAATGATCATAAATATTTANTAG
AAAAGGTAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGATTTACATT
TAAAACCAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTTCAAGTAA
AACAACCAACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCAGCTTCAA
TAAAATCATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCAGAAGAAG
TTGTCATCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCATTGGTAT
TTACTGGTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACTGTTAAAG
GTGAAGATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATXXXXXXXXXXTTAAGA
AATAAAGTAAACTCTTATTTGGGTATTTTGGGTGACAAAGAGATTGTGGCCGAGGCTAGA
AAGAGATTTGAGCAATTCAAAGTCGACCAATCTTCTTTACCTTCCGATATCCGTTCAAGT
GTTTTAGTCACTGTTGTAAAGAATGGTTCCGAAGCTGAACAACAAGAAATTATCAATAGA
TACCTCGCTTCCAATGATATTGCAGAGAAATCAAGTTTATTGTCAGTTGTTTGCAAATCA
CCATCCAGTGCATTGGTATTGAAGGCTTTGGAATTCTCTGTCTCAAAAGATGTTAGAACT
TGTGAATCCTATATGCTTTGGTGAGTCGGAAATGAATTTAAACCAGTAGTTTGGAAATAT
TTCACTGAAAACTTTAAATCAATCAATGAAACCTTTAATCAAAATGTTTTATTCGCTTAT
ATGATCTCTTTTGCTTTGTCCTCAAAAATGACTGATCAACAATTACAACAAGTTGAAGAT
TTCTTCAAACAAAATCCAGTTGCAATTGCTGATCGTTCAATTAAACAAGATTTAGAACAA
ATTAGAAATAATACAAAATGGTTTAATTCATTTAATAAAGATTTATTAAATTGGATTAAA
AAATAAATAATCTAATTTAATAAAGATTTATAAATTTGGATTTTTATAAAAAATAAAATT
TATTTAATTTTTATTATTTTTTTATTAAGTTTTATAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
f*LIIVNKMCKYNDHKYLXEKVDRLVLPENVVPIKYDLHLKPNLKEFTFKGEETITVQVK
QPTKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELSVGEYCLSLVF
TGLLNDKLKGFYRSKYTVKGEDRYLATTQFEATD---

---LRNKVNSYLGILGDKEIVAEARKRFEQFKVDQSSLPSDIRSSVLVTVVKNGSEAEQQ
EIINRYLASNDIAEKSSLLSVVCKSPSSALVLKALEFSVSKDVRTCESYMLW*vgnefkp
vvwkyftenfksinetfnqnvlfaymisfalsskmtdqqlqqvedffkqnpvaiadrsik
qdleqirnntkwfnsfnkdllnwikk*ii*fnkdl*iwifiknkiylifiifllsfin
Translated Amino Acid sequence (All Frames) 
Frame A:
ifn*s*stkcvnimiinix*kr*idwyyqkmlyqlnmiyi*nqi*knlllkvkrpsqfk*
nnqqkp*lyiqlklkfnqlq*nhhhhlnhqnqlhfmnqkklsslnlkmnyqlvnivyhwy
llvy*mtn*kvsivqsillkvkivi*qqlnskpp---

---LRNKVNSYLGILGDKEIVAEARKRFEQFKVDQSSLPSDIRSSVLVTVVKNGSEAEQQ
EIINRYLASNDIAEKSSLLSVVCKSPSSALVLKALEFSVSKDVRTCESYMLW*vgnefkp
vvwkyftenfksinetfnqnvlfaymisfalsskmtdqqlqqvedffkqnpvaiadrsik
qdleqirnntkwfnsfnkdllnwikk*ii*fnkdl*iwifiknkiylifiifllsfin

Frame B:
flinhsqqnv*i**s*ifxrkgr*igitrkcctn*i*ftfktkfkriyf*r*rdhhsssk
ttnknhnytfn*n*nsisfnkiiiiisiikinyil*trrschl*i*k*iisw*ilfiigi
ywfik*qikrflsfkvyc*r*rslfsnnsirshr---

---*eik*tliwvfwvtkrlwprlerdlsnskstnllylpisvqvf*sll*rmvpklnnk
klsidtslpmilqrnqvycqlfanhhpvhwy*rlwnslsqkmlelvnpicfgesemnlnq
*fgnislktlnqsmkplikmfysli*slllcpqk*linnynklkissnkiqlqllivqln
ki*nkleiiqnglihlikiy*iglknk*snlikiykfgfl*kikfi*fllffy*vl*i

Frame C:
f*LIIVNKMCKYNDHKYLXEKVDRLVLPENVVPIKYDLHLKPNLKEFTFKGEETITVQVK
QPTKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELSVGEYCLSLVF
TGLLNDKLKGFYRSKYTVKGEDRYLATTQFEATD---

---kk*skllfgyfg*qrdcgrg*kei*aiqsrpifftfrypfkcfshcckewfrs*ttr
nyq*iprfq*ycreikfivsclqitiqcigiegfgilclkrc*nl*ilyalvsrk*i*ts
sleifh*kl*inq*nl*skcfirlydlfcfvlknd*stitts*rflqtksscnc*sfn*t
rfrtn*k*ykmv*fi**rfikld*kinnli**rfinldfykk*nlfnfyyffikfyk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM190 (CHM190Q) /CSM/CH/CHM1-D/CHM190Q.Seq.d/                       1421   0.0
VHP819 (VHP819Q) /CSM/VH/VHP8-A/VHP819Q.Seq.d/                       1082   0.0
VHP741 (VHP741Q) /CSM/VH/VHP7-B/VHP741Q.Seq.d/                       1082   0.0
VHP256 (VHP256Q) /CSM/VH/VHP2-C/VHP256Q.Seq.d/                       1082   0.0
VHO863 (VHO863Q) /CSM/VH/VHO8-C/VHO863Q.Seq.d/                       1082   0.0
VHO805 (VHO805Q) /CSM/VH/VHO8-A/VHO805Q.Seq.d/                       1082   0.0
VHN658 (VHN658Q) /CSM/VH/VHN6-C/VHN658Q.Seq.d/                       1082   0.0
VHN267 (VHN267Q) /CSM/VH/VHN2-C/VHN267Q.Seq.d/                       1082   0.0
VHJ865 (VHJ865Q) /CSM/VH/VHJ8-C/VHJ865Q.Seq.d/                       1082   0.0
VHJ837 (VHJ837Q) /CSM/VH/VHJ8-B/VHJ837Q.Seq.d/                       1082   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY631393|AY631393.1 Dictyostelium discoideum puromycin-sensitive aminopeptidase-like protein (psa) mRNA, partial cds.   878   0.0    2
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   2e-04  16
BX571857|BX571857.1 Staphylococcus aureus strain MSSA476, complete genome.    34   0.002  32
BX571856|BX571856.1 Staphylococcus aureus subsp. aureus strain MRSA252, complete genome.    34   0.002  34
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   0.008  16
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    32   0.009  9
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    34   0.011  13
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          36   0.012  21
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence.    36   0.020  13
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   0.021  29
dna update 2005. 4. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin...   368   e-100
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso...    96   2e-18
AF350242_1(AF350242|pid:none) Pichia angusta aminopeptidase gene...    96   2e-18
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso...    96   2e-18
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-...    95   4e-18
FM992688_411(FM992688|pid:none) Candida dubliniensis CD36 chromo...    94   7e-18
EF084752_1(EF084752|pid:none) Picea sitchensis clone WS0273_N18 ...    93   2e-17
EU686614_22(EU686614|pid:none) Uncultured marine crenarchaeote K...    92   4e-17
AP005572_11(AP005572|pid:none) Oryza sativa Japonica Group genom...    90   2e-16
A65888_1(A65888|pid:none) Sequence 1 from Patent WO9738114.  &Y0...    89   4e-16
protein update 2009. 4. 8
PSORT 

 psg: 0.50  gvh: 0.26  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHM190 is nuc
5' end seq. ID CHM190F
5' end seq. 
>CHM190F.Seq
ATTTTTAATTAATCATAGTCAACAAAATGTGTAAATATAATGATCATAAATATTTANTAG
AAAAGGTAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGATTTACATT
TAAAACCAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTTCAAGTAA
AACAACCAACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCAGCTTCAA
TAAAATCATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCAGAAGAAG
TTGTCATCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCATTGGTAT
TTACTGGTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACTGTTAAAG
GTGAAGATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATNNNNNNNNNN
Length of 5' end seq. 474
3' end seq. ID CHM190Z
3' end seq. 
>CHM190Z.Seq
NNNNNNNNNNTTAAGAAATAAAGTAAACTCTTATTTGGGTATTTTGGGTGACAAAGAGAT
TGTGGCCGAGGCTAGAAAGAGATTTGAGCAATTCAAAGTCGACCAATCTTCTTTACCTTC
CGATATCCGTTCAAGTGTTTTAGTCACTGTTGTAAAGAATGGTTCCGAAGCTGAACAACA
AGAAATTATCAATAGATACCTCGCTTCCAATGATATTGCAGAGAAATCAAGTTTATTGTC
AGTTGTTTGCAAATCACCATCCAGTGCATTGGTATTGAAGGCTTTGGAATTCTCTGTCTC
AAAAGATGTTAGAACTTGTGAATCCTATATGCTTTGGTGAGTCGGAAATGAATTTAAACC
AGTAGTTTGGAAATATTTCACTGAAAACTTTAAATCAATCAATGAAACCTTTAATCAAAA
TGTTTTATTCGCTTATATGATCTCTTTTGCTTTGTCCTCAAAAATGACTGATCAACAATT
ACAACAAGTTGAAGATTTCTTCAAACAAAATCCAGTTGCAATTGCTGATCGTTCAATTAA
ACAAGATTTAGAACAAATTAGAAATAATACAAAATGGTTTAATTCATTTAATAAAGATTT
ATTAAATTGGATTAAAAAATAAATAATCTAATTTAATAAAGATTTATAAATTTGGATTTT
TATAAAAAATAAAATTTATTTAATTTTTATTATTTTTTTATTAAGTTTTATAAATAA
Length of 3' end seq. 717
Connected seq. ID CHM190P
Connected seq. 
>CHM190P.Seq
ATTTTTAATTAATCATAGTCAACAAAATGTGTAAATATAATGATCATAAATATTTANTAG
AAAAGGTAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAAATATGATTTACATT
TAAAACCAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCATCACAGTTCAAGTAA
AACAACCAACAAAAACCATAACTATACATTCAATTGAAATTGAAATTCAATCAGCTTCAA
TAAAATCATCATCATCATCTCAATCATCAAAATCAATTACATTTTATGAACCAGAAGAAG
TTGTCATCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTGTTTATCATTGGTAT
TTACTGGTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAAGTATACTGTTAAAG
GTGAAGATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGAT----------TTAAGA
AATAAAGTAAACTCTTATTTGGGTATTTTGGGTGACAAAGAGATTGTGGCCGAGGCTAGA
AAGAGATTTGAGCAATTCAAAGTCGACCAATCTTCTTTACCTTCCGATATCCGTTCAAGT
GTTTTAGTCACTGTTGTAAAGAATGGTTCCGAAGCTGAACAACAAGAAATTATCAATAGA
TACCTCGCTTCCAATGATATTGCAGAGAAATCAAGTTTATTGTCAGTTGTTTGCAAATCA
CCATCCAGTGCATTGGTATTGAAGGCTTTGGAATTCTCTGTCTCAAAAGATGTTAGAACT
TGTGAATCCTATATGCTTTGGTGAGTCGGAAATGAATTTAAACCAGTAGTTTGGAAATAT
TTCACTGAAAACTTTAAATCAATCAATGAAACCTTTAATCAAAATGTTTTATTCGCTTAT
ATGATCTCTTTTGCTTTGTCCTCAAAAATGACTGATCAACAATTACAACAAGTTGAAGAT
TTCTTCAAACAAAATCCAGTTGCAATTGCTGATCGTTCAATTAAACAAGATTTAGAACAA
ATTAGAAATAATACAAAATGGTTTAATTCATTTAATAAAGATTTATTAAATTGGATTAAA
AAATAAATAATCTAATTTAATAAAGATTTATAAATTTGGATTTTTATAAAAAATAAAATT
TATTTAATTTTTATTATTTTTTTATTAAGTTTTATAAATAA
Length of connected seq. 1171
Full length Seq ID -
Full length Seq. -
Length of full length seq. -