CHM180
Library CH
(Link to library)
Clone ID CHM180
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHM180P
(Link to Original site)
Representative DNA sequence
>CHM180 (CHM180Q) /CSM/CH/CHM1-D/CHM180Q.Seq.d/
ACGTATTTTGGCATTAAAAGGAAAATGTTATTTANATTCAAATAAAAATGCATTGTATGA
TGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTATAA
GGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGGATT
AACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGAAAC
CTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGTTTCAGC
TGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCCATTGAT
TAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTT
GGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTACTCAACC
ACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATTTACCNGATATCA
ATGGTAATGGAATTTTTGATGGAAXXXXXXXXXXAGGTAAATGTGGTAGTCTTGTTGGTG
CCGGAGTTGATCAAAAATCACTCACTGGTCTTAGAGATGGTCCAGGTAATGGTAATTTCT
TTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTG
GTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTC
GTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTT
CAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTT
CAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATG
GTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCT
ATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAAT
TTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTG
GTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTT
TCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGGGTTA
TTATTTTAAGGTTGTTCATTGGTATTATTCCAAAAAAATAAAATAATAAAAAAATATAAA
TA
sequence update 2002.10.25
Translated Amino Acid sequence
vfwh*kenvixiqikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*
lnvqlmnlhlpiqkiitlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*L
NKLVFHQAHLYLQLELVLIWVMLSKLNHQLNHLLNHLLNHQHLHHLLVVPSLVYYLPDIN
GNGIFDG---

---GKCGSLVGAGVDQKSLTGLRDGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTG
FDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQ
YRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNY
YCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGVIILRLFIGI
IPKK*nnkki*i


Translated Amino Acid sequence (All Frames)
Frame A:
tyfgikrkmlfxfk*kciv**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*wi
nstynl*iyiyqskrlll*nl*kdiglstrctmyssngfs**fgsrsfsckylcl*hsid
*tswcfirliytys*n*c*fglc*ansttnsttysttysttntstiyw*crrwfiiyxis
mvmeflme---

---r*mw*scwcrs*skithws*rwsr*w*fl**s*nrss*lyqcfwcn*rws*yycynw
frll*si*rfnslv*cnlw*ttkrllfiynlfkwsypisnlw*tkwsw*yyfsv*ffsst
iscw*sla*ykw*wysrcw*twyfrnhsilnlwstinsnksncirfkwlfqi*s*fqfkl
llcnsccilpswffhynekc*snsskyk**cflinc**clchffyff*cwgyyfkvvhwy
yskkik**knin

Frame B:
rilalkgkcylxsnknalydegepgfgnveislgnatdykgnkypiryssadgtfiydgl
tqrttyeftftnpkdyyfetyektlacppgvpcirptvsadnlaadllvantfaynipli
kqvgvssgssiltvrisvdlgyveqtqpptqpptqpptqpptpppftgsavagllftxyq
w*wnf*w---

---GKCGSLVGAGVDQKSLTGLRDGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVTTG
FDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSLPQ
YRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSSNY
YCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGVIILRLFIGI
IPKK*nnkki*i

Frame C:
vfwh*kenvixiqikmhcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*
lnvqlmnlhlpiqkiitlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*L
NKLVFHQAHLYLQLELVLIWVMLSKLNHQLNHLLNHLLNHQHLHHLLVVPSLVYYLPDIN
GNGIFDG---

---vnvvvllvpeliknhslvlemvqvmvisliiikqvfmtipmllvqlkvvvilllqlv
sitmkhlkvqfvgimqplvnn*kvtlyi*plqmvvphlqplvnkmvlvillqcmillfhn
ivlvefgli*mvmvfkmlvnlvfqesqys*smvnnqlqqvklypiqmvisnlklisvqii
iv*fllhssklvlplq*emliqliqiqivmlsyqllimfmsllllllmlgllf*gcslvl
fqknkiikkyk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHM180 (CHM180Q) /CSM/CH/CHM1-D/CHM180Q.Seq.d/ 2488 0.0
SHK386 (SHK386Q) /CSM/SH/SHK3-D/SHK386Q.Seq.d/ 1413 0.0
SHK226 (SHK226Q) /CSM/SH/SHK2-B/SHK226Q.Seq.d/ 1413 0.0
SHG828 (SHG828Q) /CSM/SH/SHG8-B/SHG828Q.Seq.d/ 1413 0.0
SHG387 (SHG387Q) /CSM/SH/SHG3-D/SHG387Q.Seq.d/ 1413 0.0
SHG294 (SHG294Q) /CSM/SH/SHG2-D/SHG294Q.Seq.d/ 1413 0.0
SHD638 (SHD638Q) /CSM/SH/SHD6-B/SHD638Q.Seq.d/ 1413 0.0
SHD547 (SHD547Q) /CSM/SH/SHD5-B/SHD547Q.Seq.d/ 1413 0.0
SHD395 (SHD395Q) /CSM/SH/SHD3-D/SHD395Q.Seq.d/ 1413 0.0
SHC888 (SHC888Q) /CSM/SH/SHC8-D/SHC888Q.Seq.d/ 1413 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 62 3e-05 1
AF066073|AF066073.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds. 62 3e-05 1
AF066071|AF066071.1 Dictyostelium discoideum SP85 (pspB) gene, complete cds. 62 3e-05 2
CK808839|CK808839.1 Rasgsc1686 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence. 34 3e-05 4
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 48 2e-04 16
CK808739|CK808739.1 Rasgsc1529 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence. 32 4e-04 4
S72639|S72639.1 PspB=prespore-specific gene {5' region} [Dictyostelium discoideum, Genomic, 1918 nt]. 58 4e-04 1
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 58 4e-04 1
AF066072|AF066072.1 Dictyostelium discoideum SP85 (pspB) gene, partial cds. 58 4e-04 2
CK808037|CK808037.1 Rasgsc0316 Salivary Gland 4th instar 3rd period (spinning cocoon) Rhynchosciara americana cDNA, mRNA sequence. 34 0.002 4
dna update 2005. 4. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 78 6e-13
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl... 63 2e-08
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 62 6e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC... 61 1e-07
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei... 53 3e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD... 53 3e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur... 53 3e-05
protein update 2009. 4. 8
PSORT

psg: 0.79 gvh: 0.50 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 1.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for CHM180 is nuc

5' end seq. ID CHM180F
5' end seq.
>CHM180F.Seq
ACGTATTTTGGCATTAAAAGGAAAATGTTATTTANATTCAAATAAAAATGCATTGTATGA
TGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTATAA
GGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGGATT
AACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGAAAC
CTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGTTTCAGC
TGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCCATTGAT
TAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTT
GGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTACTCAACC
ACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATTTACCNGATATCA
ATGGTAATGGAATTTTTGATGGAANNNNNNNNNN
Length of 5' end seq. 574
3' end seq. ID CHM180Z
3' end seq.
>CHM180Z.Seq
NNNNNNNNNNAGGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATCACTCA
CTGGTCTTAGAGATGGTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTC
ATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTG
GTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTA
AACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAA
CCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCAC
AATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTG
AACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAA
GTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATT
ATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATG
CTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTT
ATGTCACTTCTTTTACTTCTTCTGATGCTGGGGTTATTATTTTAAGGTTGTTCATTGGTA
TTATTCCAAAAAAATAAAATAATAAAAAAATATAAATA
Length of 3' end seq. 758
Connected seq. ID CHM180P
Connected seq.
>CHM180P.Seq
ACGTATTTTGGCATTAAAAGGAAAATGTTATTTANATTCAAATAAAAATGCATTGTATGA
TGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTATAA
GGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGGATT
AACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGAAAC
CTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGTTTCAGC
TGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCCATTGAT
TAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTT
GGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTACTCAACC
ACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATTTACCNGATATCA
ATGGTAATGGAATTTTTGATGGAA----------AGGTAAATGTGGTAGTCTTGTTGGTG
CCGGAGTTGATCAAAAATCACTCACTGGTCTTAGAGATGGTCCAGGTAATGGTAATTTCT
TTGATAATCATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTG
GTCGTGATATTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTC
GTTGGTATAATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTT
CAAATGGTCGTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTT
CAGTGTATGATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATG
GTAATGGTATTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCT
ATGGTCAACAATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAAT
TTGAAGTTGATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTG
GTTCTTCCATTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTT
TCTTATCAACTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGGGTTA
TTATTTTAAGGTTGTTCATTGGTATTATTCCAAAAAAATAAAATAATAAAAAAATATAAA
TA
Length of connected seq. 1312
Full length Seq ID -
Full length Seq. -
Length of full length seq. -