>CHM178 (CHM178Q) /CSM/CH/CHM1-D/CHM178Q.Seq.d/
AATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATTAAT
TTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCAC
ACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATTGAT
TTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATTGCA
AATGATCAAGGTAATANAACCACTCCATCTTATGTTGCATTTACTGATACANAACGTTTA
ATTGGTGATGCTGCAAANAATCAAGTTGCAATGAATCCAACCAATACAGTATTTGATGCT
AAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAACATTGG
CCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAAGGT
GAAACTAAAGTTTTCTCACXXXXXXXXXXTTATTCCAAGAAATACAACAATTCCATGTAA
GAAAACTCAAACCTTCTCTACATACTCTGATAATCAACCAGGTGTATTAATTCAAGTTTA
TGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGG
TATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAA
TGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAAT
TACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGA
GAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGA
AAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTC
AGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATC
AAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGT
CAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCC
AGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTG
ACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTA
GTAAAATCAATAAAGCTTCTCATATATAGTACACA

nsvvqfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIGID
LGTTYSCVGVWQNDRVEIIANDQGNXTTPSYVAFTDTXRLIGDAAXNQVAMNPTNTVFDA
KRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFS---

---IPRNTTIPCKKTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRG
VPQVEVTFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDE
QQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKD
EYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseen
isik*is*kiis**nq*sfsyivh

Frame A:
nsvvqfnl*****ykyikinffvykfl*ink*iiifflihthtyky*iiky*KMSSIGID
LGTTYSCVGVWQNDRVEIIANDQGNXTTPSYVAFTDTXRLIGDAAXNQVAMNPTNTVFDA
KRLIGRKFSDKEVQSDMKHWPFKVIPKDGDKPHIQVEFKGETKVFS---

---lfqeiqqfhvrklkpslhtliinqvy*fkfmkvnvl*pkiiiywvnlnflvfhqhqe
vyhklklhlmlmqmvs*myqlkinqlvtnkrlqlpmikvvfqkkklkkwllmqrnsnnkm
nnkkivlnqrinwkimhsllkiqlkmkklqpkfqiqinqllnlklkvysng*nqikpqkr
mnmkir*kp*kqlsiqs*vnsikkevchkvvvcqvvcqmihqrvqttk*tn*idgifqrk
tslsnrflkk**vskinkashi*yt

Frame B:
iq*fnliynnnnsini*rliflyinfck*ink**fff*fthihinik*lnikkchqlvli
*vqhihvlvfgkmivlkllqmikvixplhlmlhllixnv*lvmlqxiklq*iqpiqylml
nv*lvvnlvtkkfkvi*nighsklfqrmvishifklnskvklkfsh---

---yskkynnsm*ensnllyil**strcinssl*r*tcydqr**fig*i*tfwyststkr
ctts*syi*c*ckwylkcis*r*inw*qtkdynyq**rssfkrrn*kngc*creiqttr*
ttkrsc*ike*igklcihc*kfn*r*kscsqnfrfr*iny*i*n*kctqmvriksnrrkg
*i*r*deslrsscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrirlteffrgk
hlyqidflknnklvksiklliyst

Frame C:
fsssi*fiiiiiv*iykd*ffci*ifvnk*innnfffnshtyi*ilnn*ilknvinwy*f
rynifmcwclak*sc*nyck*sr*xnhsilcciy*yxtfnw*cckxsscnesnqysi*c*
tfnws*i**qrssk*yetlaiqsyskgw**atyss*iqr*n*sfl---

---IPRNTTIPCKKTQTFSTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRG
VPQVEVTFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADAEKFKQQDE
QQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKD
EYEDKMKALEAVVNPIMSKLYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD*rnfseen
isik*is*kiis**nq*sfsyivh

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM178 (CHM178Q) /CSM/CH/CHM1-D/CHM178Q.Seq.d/                       2266   0.0
VHP236 (VHP236Q) /CSM/VH/VHP2-B/VHP236Q.Seq.d/                       1556   0.0
VHB518 (VHB518Q) /CSM/VH/VHB5-A/VHB518Q.Seq.d/                       1550   0.0
VHH614 (VHH614Q) /CSM/VH/VHH6-A/VHH614Q.Seq.d/                       1546   0.0
VHP437 (VHP437Q) /CSM/VH/VHP4-B/VHP437Q.Seq.d/                       1544   0.0
CHL728 (CHL728Q) /CSM/CH/CHL7-B/CHL728Q.Seq.d/                       1544   0.0
CHL177 (CHL177Q) /CSM/CH/CHL1-D/CHL177Q.Seq.d/                       1544   0.0
CHE689 (CHE689Q) /CSM/CH/CHE6-D/CHE689Q.Seq.d/                       1544   0.0
VHP224 (VHP224Q) /CSM/VH/VHP2-A/VHP224Q.Seq.d/                       1540   0.0
SFG805 (SFG805Q) /CSM/SF/SFG8-A/SFG805Q.Seq.d/                       1540   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70).  1558   0.0    1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,.  1550   0.0    1
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds.   141   e-111  7
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.   141   e-104  13
AF221541|AF221541.1 Cryptosporidium serpentis heat shock protein 70 (HSP70) gene, partial cds.   127   1e-90  9
M84652|M84652.1 Entamoeba heat shock protein (Hsp70) mRNA, complete cds.   155   3e-85  7
AY954892|AY954892.1 Cryptosporidium andersoni strain HenanZhzhca heat shock protein 70 gene, partial cds.   111   5e-82  9
AY954894|AY954894.1 Cryptosporidium andersoni strain bjcm heat shock protein 70 gene, partial cds.   105   3e-80  9
AX536934|AX536934.1 Sequence 535 from Patent WO02064766.          133   4e-80  7
A58313|A58313.1 Sequence 1 from Patent WO9636707.                 133   5e-80  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   392   e-107
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ...   392   e-107
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s...   289   2e-76
FB790108_1(FB790108|pid:none) Sequence 9381 from Patent WO200803...   288   2e-76
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2;     ...   288   3e-76
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc...   288   3e-76
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3;           288   4e-76
FB790112_1(FB790112|pid:none) Sequence 9385 from Patent WO200803...   287   5e-76
(P22953) RecName: Full=Heat shock cognate 70 kDa protein 1;     ...   287   6e-76
S46302(S46302;S41402;JA0169;S36623) dnaK-type molecular chaperon...   287   6e-76

 psg: 0.87  gvh: 0.35  alm: 0.46  top: 0.27  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHM178 is cyt

>CHM178F.Seq
AATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATTAAT
TTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCAC
ACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATTGAT
TTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATTGCA
AATGATCAAGGTAATANAACCACTCCATCTTATGTTGCATTTACTGATACANAACGTTTA
ATTGGTGATGCTGCAAANAATCAAGTTGCAATGAATCCAACCAATACAGTATTTGATGCT
AAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAACATTGG
CCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAAGGT
GAAACTAAAGTTTTCTCACNNNNNNNNNN

>CHM178Z.Seq
NNNNNNNNNNTTATTCCAAGAAATACAACAATTCCATGTAAGAAAACTCAAACCTTCTCT
ACATACTCTGATAATCAACCAGGTGTATTAATTCAAGTTTATGAAGGTGAACGTGCTATG
ACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGGTATTCCACCAGCACCAAGA
GGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTATCTTAAATGTATCA
GCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCAATGATAAAGGTCGT
CTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGAGAAATTCAAACAACAAGAT
GAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATTATGCATTCACTGTT
AAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTCAGATTCAGATAAATCAACT
ATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATCAAACCGCAGAAAAG
GATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATCCAATCATGAGTAAA
CTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTGGTATGTCAAATGAT
TCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGAATTTTTCAGAGGAA
AACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTAGTAAAATCAATAAAGCTTC
TCATATATAGTACACA

>CHM178P.Seq
AATTCAGTAGTTCAATTTAATTTATAATAATAATAATAGTATAAATATATAAAGATTAAT
TTTTTTGTATATAAATTTTTGTAAATAAATAAATAAATAATAATTTTTTTTTTAATTCAC
ACACATACATATAAATATTAAATAATTAAATATTAAAAAATGTCATCAATTGGTATTGAT
TTAGGTACAACATATTCATGTGTTGGTGTTTGGCAAAATGATCGTGTTGAAATTATTGCA
AATGATCAAGGTAATANAACCACTCCATCTTATGTTGCATTTACTGATACANAACGTTTA
ATTGGTGATGCTGCAAANAATCAAGTTGCAATGAATCCAACCAATACAGTATTTGATGCT
AAACGTTTAATTGGTCGTAAATTTAGTGACAAAGAAGTTCAAAGTGATATGAAACATTGG
CCATTCAAAGTTATTCCAAAGGATGGTGATAAGCCACATATTCAAGTTGAATTCAAAGGT
GAAACTAAAGTTTTCTCAC----------TTATTCCAAGAAATACAACAATTCCATGTAA
GAAAACTCAAACCTTCTCTACATACTCTGATAATCAACCAGGTGTATTAATTCAAGTTTA
TGAAGGTGAACGTGCTATGACCAAAGATAATAATTTATTGGGTAAATTTGAACTTTCTGG
TATTCCACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAA
TGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAAT
TACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAAAAAATGGTTGCTGATGCAGA
GAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGA
AAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGCCAAAATTTC
AGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATC
AAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGT
CAATCCAATCATGAGTAAACTCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCC
AGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTG
ACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATAATAAGTTA
GTAAAATCAATAAAGCTTCTCATATATAGTACACA