NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM171
Library CH
(Link to library)
Clone ID CHM171
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16475-1|Contig-U16524-1
Original site URL
Representative seq. ID CHM171P
(Link to Original site)
Representative DNA sequence 
>CHM171 (CHM171Q) /CSM/CH/CHM1-C/CHM171Q.Seq.d/
TTGGCCTACTGGAATTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAA
TATATATAAATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAAT
TTTTTTGAGAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAACCCNA
AAAAAAAAANCCCNNNAAAAAAAXXXXXXXXXXTAGCTCAAGATTCTCATTGTGATGATG
GTAATCCCATGTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAA
GTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTT
TACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGT
GCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGT
TCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTC
GATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTTTGTGTAAACAATACT
GCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTT
TGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCT
GTTGTTTTAGGTGCTGCTATATTGTCNGGGTAANA
sequence update 2002.10.25
Translated Amino Acid sequence 
laywnfcmiiiiqiknilykyi*iyik*k***NKFNIIKNFFEKKKXKKKKKKKKPXKTX
KKKXXXK---

---AQDSHCDDGNPMY**clcrfs**yrq*pswsmhsnsnc*m*fg**myglqlylgrwl
*cnstclsklwcl*nwll*twfrl*ikg*slffrlvly*ssm*ckiwlhsir*kmcs***
*msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyckcccswcccfrccyiv
xvx
Translated Amino Acid sequence (All Frames) 
Frame A:
laywnfcmiiiiqiknilykyi*iyik*k***NKFNIIKNFFEKKKXKKKKKKKKPXKTX
KKKXXXK---

---*lkilivmmvipctdnacvasanstansqvgqctqtptakcdlgdkcmvysctlegg
cnatqrvcpnsgackigycepgfgcklkdrvcssdwycieaqcdakygciqfdrrcapdn
skcqegvcvnntaigkndgkcisedydpkpfvcqkaalvstaviasvvvvgavvlgaail
sg*

Frame B:
wptgifv*ll*fklkiyyiniykyilnknnnkinli**kiflrkkkxkkkkkkknpkkpx
kkxpxkk---

---ssrfsl**w*shvlimlvslqlivppiaklvnalklqllnviwvinvwftvvpwkvv
vmqlnvfvqtlvlvklvivnlvsvvn*riefvlpigivlklnvmqnmvafnsiedvllii
vnvkkvfv*tillsvkmmenvflkimiqnhlfvkkll*fqllllqvll*lvllf*vllyc
xgx

Frame C:
glleflydyynsn*kyii*iyiniy*ikiiik*i*ynkkff*ekkx*kkkkkkktxknpk
kkxpxkk---

---AQDSHCDDGNPMY**clcrfs**yrq*pswsmhsnsnc*m*fg**myglqlylgrwl
*cnstclsklwcl*nwll*twfrl*ikg*slffrlvly*ssm*ckiwlhsir*kmcs***
*msrrclckqycyr*k*wkmyf*rl*skticlskscfsfnccyckcccswcccfrccyiv
xvx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM171 (CHM171Q) /CSM/CH/CHM1-C/CHM171Q.Seq.d/                       1065   0.0
SFE223 (SFE223Q) /CSM/SF/SFE2-A/SFE223Q.Seq.d/                       1043   0.0
CHS193 (CHS193Q) /CSM/CH/CHS1-D/CHS193Q.Seq.d/                       1043   0.0
CHP865 (CHP865Q) /CSM/CH/CHP8-C/CHP865Q.Seq.d/                       1043   0.0
CHP822 (CHP822Q) /CSM/CH/CHP8-A/CHP822Q.Seq.d/                       1043   0.0
CHP160 (CHP160Q) /CSM/CH/CHP1-C/CHP160Q.Seq.d/                       1043   0.0
CHN587 (CHN587Q) /CSM/CH/CHN5-D/CHN587Q.Seq.d/                       1043   0.0
CHN512 (CHN512Q) /CSM/CH/CHN5-A/CHN512Q.Seq.d/                       1043   0.0
CHN337 (CHN337Q) /CSM/CH/CHN3-B/CHN337Q.Seq.d/                       1043   0.0
CHL311 (CHL311Q) /CSM/CH/CHL3-A/CHL311Q.Seq.d/                       1043   0.0
own update 2002.10. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    66   1e-06  1
CC075688|CC075688.1 CSU-K33r.25G4.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.25G4, DNA sequence.    50   0.059  1
CX053834|CX053834.1 UCRCS09_8E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8E08-I15-1-5.g, mRNA sequence.    50   0.059  1
CC946427|CC946427.1 BOIFV20TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIFV20, genomic survey sequence.    50   0.059  1
BH960705|BH960705.1 odd88f07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    50   0.059  1
AR549621|AR549621.1 Sequence 4752 from patent US 6747137.          46   0.26   2
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    38   0.31   4
AC109662|AC109662.7 Rattus norvegicus clone CH230-119C1, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42   0.78   3
AL287678|AL287678.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 105D19 of library G from Tetraodon nigroviridis.    38   0.80   2
AP005890|AP005890.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1029C06, WORKING DRAFT SEQUENCE, 1 ordered pieces.    46   0.92   1
dna update 2005. 4. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                318   6e-88
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   143   6e-33
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   130   3e-29
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   127   5e-28
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                118   2e-25
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 99   1e-19
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 87   5e-16
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    61   4e-08
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    59   2e-07
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    56   1e-06
protein update 2009. 4. 8
PSORT 

 psg: 0.12  gvh: 0.18  alm: 0.82  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.60  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHM171 is nuc
5' end seq. ID CHM171F
5' end seq. 
>CHM171F.Seq
TTGGCCTACTGGAATTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAA
TATATATAAATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAAT
TTTTTTGAGAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAACCCNA
AAAAAAAAANCCCNNNAAAAAAANNNNNNNNNN
Length of 5' end seq. 213
3' end seq. ID CHM171Z
3' end seq. 
>CHM171Z.Seq
NNNNNNNNNNTAGCTCAAGATTCTCATTGTGATGATGGTAATCCCATGTACTGATAATGC
TTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAAGTTGGTCAATGCACTCAAACTCC
AACTGCTAAATGTGATTTGGGTGATAAATGTATGGTTTACAGTTGTACCTTGGAAGGTGG
TTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGTGCTTGTAAAATTGGTTATTGTGA
ACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGTTCTTCCGATTGGTATTGTATTGA
AGCTCAATGTGATGCAAAATATGGTTGCATTCAATTCGATAGAAGATGTGCTCCTGATAA
TAGTAAATGTCAAGAAGGTGTTTGTGTAAACAATACTGCTATCGGTAAAAATGATGGAAA
ATGTATTTCTGAAGATTATGATCCAAAACCATTTGTTTGTCAAAAAGCTGCTTTAGTTTC
AACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCTGTTGTTTTAGGTGCTGCTATATT
GTCNGGGTAANA
Length of 3' end seq. 552
Connected seq. ID CHM171P
Connected seq. 
>CHM171P.Seq
TTGGCCTACTGGAATTTTTGTATGATTATTATAATTCAAATTAAAAATATATTATATAAA
TATATATAAATATATATTAAATAAAAATAATAATAAAATAAATTTAATATAATAAAAAAT
TTTTTTGAGAAAAAAAAAANTAAAAAAAAAAAAAAAAAAAAAAAACCCNAAAAAACCCNA
AAAAAAAAANCCCNNNAAAAAAA----------TAGCTCAAGATTCTCATTGTGATGATG
GTAATCCCATGTACTGATAATGCTTGTGTCGCTTCAGCTAATAGTACCGCCAATAGCCAA
GTTGGTCAATGCACTCAAACTCCAACTGCTAAATGTGATTTGGGTGATAAATGTATGGTT
TACAGTTGTACCTTGGAAGGTGGTTGTAATGCAACTCAACGTGTTTGTCCAAACTCTGGT
GCTTGTAAAATTGGTTATTGTGAACCTGGTTTCGGTTGTAAATTAAAGGATAGAGTTTGT
TCTTCCGATTGGTATTGTATTGAAGCTCAATGTGATGCAAAATATGGTTGCATTCAATTC
GATAGAAGATGTGCTCCTGATAATAGTAAATGTCAAGAAGGTGTTTGTGTAAACAATACT
GCTATCGGTAAAAATGATGGAAAATGTATTTCTGAAGATTATGATCCAAAACCATTTGTT
TGTCAAAAAGCTGCTTTAGTTTCAACTGCTGTTATTGCAAGTGTTGTTGTAGTTGGTGCT
GTTGTTTTAGGTGCTGCTATATTGTCNGGGTAANA
Length of connected seq. 745
Full length Seq ID -
Full length Seq. -
Length of full length seq. -