>CHM157 (CHM157Q) /CSM/CH/CHM1-C/CHM157Q.Seq.d/
XXXXXXXXXXAGAAAGCCCTCAATAAATTTGGTAAACCATGGAAATTAAATCCAAAAGAT
GGTGCTTTCTATGGTCCAAAGATTGATATTCACATCNCCGATTGTNTCAANANAAGTCAT
CAATGTGCCNCCATTCAATTAGATTTCCAATTACCAATTCGTTTCGATTTANAGTATCAA
TNTGATGATGCTGCCGAACTCAAAAANAGACCAGTTATCATTCATCGTGCTATNTTGGGT
TCCGTCGAAANAATGATGGCAATTTTAATNGAACATACCGGTGGTAAATGGCCATTATGG
GTNTCNCCACGTCAAGCTATNGTNGTCNCTGTCAATAAAACTCNCAATGAATACGGTCAA
AAGGTTTGTAAANAAATCTNTGATGCTGGTTTNTATTGTGATATCGATGATTCCGATAAA
ACTATNTNTAAAAAAGTTNGTGAAGCTCAACTTGCTCAATACAATTACATCTTGGTCGTT
GGTCAANAANAAATTAATGGTAACNCCGTCAATGTTNGTACTCGTGATAATGTCGTTANA
GGTTCTTTAACTGTTAANGACTTAATCTCTGAATTCAAACNATTAGTTAAAGAATTTAAA
TAAAATAAATTAAAAATTCTTCAATTATTATTATTTTTTTTTTTTACTAATAAATAATAA

---KALNKFGKPWKLNPKDGAFYGPKIDIHIXDCXXXSHQCAXIQLDFQLPIRFDLXYQX
DDAAELKXRPVIIHRAXLGSVEXMMAILXEHTGGKWPLWVSPRQAXVVXVNKTXNEYGQK
VCKXIXDAGXYCDIDDSDKTXXKKVXEAQLAQYNYILVVGQXXINGNXVNVXTRDNVVXG
SLTVXDLISEFKXLVKEFK*nklkilqlllfffftnk**

Frame A:
---espq*iw*tmeikskrwcflwskd*yshxrlxqxkssmcxhsirfpitnsfrfxvsx
**ccrtqkxtsyhsscyxgfrrxndgnfnxtyrw*maimgxxtssyxxxcq*nsq*irsk
gl*xnl*cwfxl*yr*fr*nyx*ksx*sstcsiqlhlgrwsxxn*w*xrqcxys**crxr
ffnc*xlnl*iqtis*ri*ik*iknssiiiifffy**ii


Frame B:
---KALNKFGKPWKLNPKDGAFYGPKIDIHIXDCXXXSHQCAXIQLDFQLPIRFDLXYQX
DDAAELKXRPVIIHRAXLGSVEXMMAILXEHTGGKWPLWVSPRQAXVVXVNKTXNEYGQK
VCKXIXDAGXYCDIDDSDKTXXKKVXEAQLAQYNYILVVGQXXINGNXVNVXTRDNVVXG
SLTVXDLISEFKXLVKEFK*nklkilqlllfffftnk**


Frame C:
---kpsinlvnhgn*iqkmvlsmvqrliftspivsxxvinvppfn*isnyqfvsixsinx
mmlpnskxdqlsfivlxwvpskx*wqf*xnipvvnghygxxhvklxxslsiklxmntvkr
fvxksxmlvxivismipiklxxkkxvklnllntitswslvxxklmvtpsmxvlvimslxv
l*llxt*slnsnx*lknlnkin*kffnyyyfffllinn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-BC09 (FC-BC09Q) /CSM/FC/FC-BC/FC-BC09Q.Seq.d/                     1057   0.0
CHM157 (CHM157Q) /CSM/CH/CHM1-C/CHM157Q.Seq.d/                       1057   0.0
FC-406 (FC-406Q) /CSM/CG/CG-FC/FC-406Q.Seq.d/                        1057   0.0
VHJ875 (VHJ875Q) /CSM/VH/VHJ8-D/VHJ875Q.Seq.d/                        987   0.0
CHL376 (CHL376Q) /CSM/CH/CHL3-D/CHL376Q.Seq.d/                        957   0.0
VHM741 (VHM741Q) /CSM/VH/VHM7-B/VHM741Q.Seq.d/                        906   0.0
FC-BJ20 (FC-BJ20Q) /CSM/FC/FC-BJ/FC-BJ20Q.Seq.d/                      656   0.0
CFH576 (CFH576Q) /CSM/CF/CFH5-D/CFH576Q.Seq.d/                         44   0.003
VHP894 (VHP894Q) /CSM/VH/VHP8-D/VHP894Q.Seq.d/                         42   0.011
VHO706 (VHO706Q) /CSM/VH/VHO7-A/VHO706Q.Seq.d/                         42   0.011

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***.   107   5e-44  8
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   107   5e-42  9
AX829856|AX829856.1 Sequence 576 from Patent WO03072602.           58   3e-17  3
AX818826|AX818826.1 Sequence 576 from Patent EP1338608.            58   3e-17  3
AR528066|AR528066.1 Sequence 369 from patent US 6723837.           58   3e-17  3
X02906|X02906.1 Yeast gene for threonyl-tRNA synthetase.           58   4e-17  3
M29237|M29237.1 D.discoideum cyclic AMP-inducible protein gene, complete cds.    64   2e-16  3
Z37997|Z37997.1 S.cerevisiae chromosome IX cosmid 9877.            58   2e-15  3
AL430245|AL430245.1 clone BA0AB036E07 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    52   5e-15  3
CV848878|CV848878.1 ID0AEE6DC10RM1 ID0AEE Acyrthosiphon pisum cDNA clone ID0AEE6DC10 5', mRNA sequence.    62   5e-14  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54J66) RecName: Full=Probable threonyl-tRNA synthetase 1, cyto...   283   4e-75
(Q0V9S0) RecName: Full=Probable threonyl-tRNA synthetase 2, cyto...   179   8e-44
(O04630) RecName: Full=Threonyl-tRNA synthetase, mitochondrial; ...   179   8e-44
T51624(T51624) threonine-tRNA ligase (EC 6.1.1.3) [imported] - A...   179   8e-44
Y14368_1(Y14368|pid:none) Oryza sativa mRNA for threonyl-tRNA sy...   176   5e-43
(Q9D0R2) RecName: Full=Threonyl-tRNA synthetase, cytoplasmic;   ...   171   1e-41
AK010256_1(AK010256|pid:none) Mus musculus ES cells cDNA, RIKEN ...   171   1e-41
(Q5XHY5) RecName: Full=Threonyl-tRNA synthetase, cytoplasmic;   ...   171   2e-41
AK153314_1(AK153314|pid:none) Mus musculus bone marrow macrophag...   171   2e-41
AY119534_1(AY119534|pid:none) Drosophila melanogaster GH20022 fu...   171   2e-41

 psg: 0.61  gvh: 0.48  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for CHM157 is cyt

>CHM157Z.Seq
NNNNNNNNNNAGAAAGCCCTCAATAAATTTGGTAAACCATGGAAATTAAATCCAAAAGAT
GGTGCTTTCTATGGTCCAAAGATTGATATTCACATCNCCGATTGTNTCAANANAAGTCAT
CAATGTGCCNCCATTCAATTAGATTTCCAATTACCAATTCGTTTCGATTTANAGTATCAA
TNTGATGATGCTGCCGAACTCAAAAANAGACCAGTTATCATTCATCGTGCTATNTTGGGT
TCCGTCGAAANAATGATGGCAATTTTAATNGAACATACCGGTGGTAAATGGCCATTATGG
GTNTCNCCACGTCAAGCTATNGTNGTCNCTGTCAATAAAACTCNCAATGAATACGGTCAA
AAGGTTTGTAAANAAATCTNTGATGCTGGTTTNTATTGTGATATCGATGATTCCGATAAA
ACTATNTNTAAAAAAGTTNGTGAAGCTCAACTTGCTCAATACAATTACATCTTGGTCGTT
GGTCAANAANAAATTAATGGTAACNCCGTCAATGTTNGTACTCGTGATAATGTCGTTANA
GGTTCTTTAACTGTTAANGACTTAATCTCTGAATTCAAACNATTAGTTAAAGAATTTAAA
TAAAATAAATTAAAAATTCTTCAATTATTATTATTTTTTTTTTTTACTAATAAATAATAA