NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM148
Library CH
(Link to library)
Clone ID CHM148
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15865-1
Original site URL
Representative seq. ID CHM148P
(Link to Original site)
Representative DNA sequence 
>CHM148 (CHM148Q) /CSM/CH/CHM1-B/CHM148Q.Seq.d/
TTATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTT
CAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAA
AAAAGCAGCAGAGGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAAT
AAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAG
CAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGG
TTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGG
TGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAACA
AAAATTAATTAAACAAAAACATTAAAAAAAAAAXXXXXXXXXXTTATTCATTATATTATT
AATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCAAATAAATTAAAAGAT
AGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAGGGTT
TAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATC
AATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCA
AACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTAC
CAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTG
CTTGGAAATTCTAGAAGGNAAAGAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
ihyiinlflknl*k*kllisnklkdrrk*liigikknllkkqqrv*rmprilhphmple*
mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*lwv
ylvyllgnsmkerntkrmnkn*LNKNIKKK---

---IHYIINLFLKNL*k*kllisnklkdrrk*liigikknllkkqqrv*rmprilhphmp
le*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*
lwvylvyllgnsrrxrn
Translated Amino Acid sequence (All Frames) 
Frame A:
lfiillicf*kiyknkny*fqin*kieend**lg*rktc*kssrgfkecqeyciliclwn
kcikrsikfkfqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwfpsfg
ciwficleil*rkeiqre*tkin*tktlkkk---

---lfiillicf*kiyknkny*fqin*kieend**lg*rktc*kssrgfkecqeycilic
lwnkcikrsikfkfqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwfp
sfgciwficleilegke

Frame B:
yslyy*fvfkkfikikiinfk*ikr*kkmtdnwdkeklakkaaeglknakntassyasgi
naskdqlnsnfknikenissnlnnakhtieenvhnaqrtgyppkvpapgsnkfigflalg
vfglfawkfyegkkykeneqklikqkh*kk---

---yslyy*fvfkkfikikiinfk*ikr*kkmtdnwdkeklakkaaeglknakntassya
sginaskdqlnsnfknikenissnlnnakhtieenvhnaqrtgyppkvpapgsnkfigfl
algvfglfawkf*kxkk

Frame C:
ihyiinlflknl*k*kllisnklkdrrk*liigikknllkkqqrv*rmprilhphmple*
mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*lwv
ylvyllgnsmkerntkrmnkn*LNKNIKKK---

---IHYIINLFLKNL*k*kllisnklkdrrk*liigikknllkkqqrv*rmprilhphmp
le*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*
lwvylvyllgnsrrxrn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM148 (CHM148Q) /CSM/CH/CHM1-B/CHM148Q.Seq.d/                        648   0.0
SSM768 (SSM768Q) /CSM/SS/SSM7-C/SSM768Q.Seq.d/                        618   e-176
SSM690 (SSM690Q) /CSM/SS/SSM6-D/SSM690Q.Seq.d/                        618   e-176
SSK829 (SSK829Q) /CSM/SS/SSK8-B/SSK829Q.Seq.d/                        618   e-176
SSJ861 (SSJ861Q) /CSM/SS/SSJ8-C/SSJ861Q.Seq.d/                        618   e-176
SSJ338 (SSJ338Q) /CSM/SS/SSJ3-B/SSJ338Q.Seq.d/                        618   e-176
SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/                        618   e-176
SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/                        618   e-176
SSH508 (SSH508Q) /CSM/SS/SSH5-A/SSH508Q.Seq.d/                        618   e-176
SSG891 (SSG891Q) /CSM/SS/SSG8-D/SSG891Q.Seq.d/                        618   e-176
own update 2002.10. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          32   0.003  20
AR300198|AR300198.1 Sequence 1 from patent US 6537773.             36   0.010  15
BD439871|BD439871.1 Nucleotide Sequence of the Mycoplasma Genitalium Genome , Fragments Thereof, and Uses Thereof.    36   0.010  15
AV234950|AV234950.1 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732401F15, 3' end partial sequence.    52   0.017  1
AC151709|AC151709.9 Medicago truncatula clone mth2-31g22, WORKING DRAFT SEQUENCE.    36   0.019  10
AR584244|AR584244.1 Sequence 1 from patent US 6797466.             38   0.028  24
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             38   0.028  24
CP000046|CP000046.1 Staphylococcus aureus subsp. aureus COL, complete genome.    34   0.036  27
CW430510|CW430510.1 fsbb001f144e01f0 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone fsbb001f144e01, genomic survey sequence.    40   0.058  2
CP000013|CP000013.1 Borrelia garinii PBi, complete genome.         36   0.13   18
dna update 2005. 4. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014188_347(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.0
(Q80WK7) RecName: Full=Equilibrative nucleoside transporter 3; A...    35   2.3
BC078678_1(BC078678|pid:none) Rattus norvegicus solute carrier f...    35   2.3
AL844507_56(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    35   3.0
AE017308_577(AE017308|pid:none) Mycoplasma mobile 163K complete ...    35   3.0
protein update 2009. 4. 8
PSORT 

 psg: 0.93  gvh: 0.27  alm: 0.30  top: 0.57  tms: 0.07  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.24  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHM148 is cyt
5' end seq. ID CHM148F
5' end seq. 
>CHM148F.Seq
TTATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTT
CAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAA
AAAAGCAGCAGAGGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAAT
AAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAG
CAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGG
TTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGG
TGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAACA
AAAATTAATTAAACAAAAACATTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 463
3' end seq. ID CHM148Z
3' end seq. 
>CHM148Z.Seq
NNNNNNNNNNTTATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAA
TTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAA
AACTTGCTAAAAAAGCAGCAGAGGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATG
CCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGA
ACATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTC
AAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCC
TAGCTTTGGGTGTATTTGGTTTATTTGCTTGGAAATTCTAGAAGGNAAAGAAAT
Length of 3' end seq. 414
Connected seq. ID CHM148P
Connected seq. 
>CHM148P.Seq
TTATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTT
CAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAA
AAAAGCAGCAGAGGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAAT
AAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAG
CAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGG
TTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGG
TGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAACA
AAAATTAATTAAACAAAAACATTAAAAAAAAAA----------TTATTCATTATATTATT
AATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCAAATAAATTAAAAGAT
AGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAGGGTT
TAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGATC
AATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGCCA
AACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGTAC
CAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGGGTGTATTTGGTTTATTTG
CTTGGAAATTCTAGAAGGNAAAGAAAT
Length of connected seq. 857
Full length Seq ID -
Full length Seq. -
Length of full length seq. -