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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM140
Library CH
(Link to library)
Clone ID CHM140
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16333-1
Original site URL
Representative seq. ID CHM140P
(Link to Original site)
Representative DNA sequence 
>CHM140 (CHM140Q) /CSM/CH/CHM1-B/CHM140Q.Seq.d/
AATAATAAAAATAATAAAAAAAATAAATATTAATAAATATTATTTAAAAATTTTATTTAT
AGCAAAATAACTAATATATTGTAAAATAATTTTAGAATATTTAAAAAATATTCATATAAT
AATAAATAAAAATGAAAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTTTTTTAA
TTTTATGTTTTGCAAAACCATCTCTTTCAGATGACCCTTTAACAACTTCAACAACAACAA
CAACAGCAACTGCACTACCAACGACATCGGCAGCATCAACAGCAAAGGTAACAACAACAA
CCACAACTACAGGATCACCAGCATCAACCACAACTACAGGAGCACCAACATCAACTACAG
GAGCATCAACATCAACTACAGGAGCACCATCATCATCATCTTCATCGAATGAAACAACTC
CAACTGCAACACCAACTAAAAAACCTGTAACACCAACACCATCATCAACATCATCATCAT
CATCATCATCTGAAGTAACATCATCCTCATCCGAATCATCAGCTGGTGAACATCCATGTG
CAACTGATGTTTTTGATAGTATGAGTAATTCTGGTAATTTXXXXXXXXXXGGATGATCTT
TACTTTTCAAATGGTACGGTTTGTATGGAANAGTCATCGGAATATCCATACTATCAACTT
GGTCAATTATTAAATGGTGCTTCCGATCAGTATAACNCTGGTAATGTAAATTTCAAATCC
GTTAGTAAACTTTTTANAGGTTTTCCAACTATCGAGTATCAATTATACAATAATTACAAA
GCAATCATNTCAATGATGAATGGTACAATCGATACATNTCAATATGATNTTTTGAGATTG
AATTTNTTNTTCCTTCATGATCAATNTTATAATAATCCAAATCCAAGTATTGACTNTAGT
GAAGTTGCAAACTCTTTCTTTTTANATNTTCAAATTTGTATTACCGTTCAAGTGGTTGGT
AATTTACCTTGTGTTGGTTTATCNCCANACTTGGGTGGTCAAGTTCCAAATGCAGTATGG
GTTGAACTTTTAATTCCNTTCTCTGATNTTCAAGTTTATCCAAATGCTNTTATCAGTAGT
ATCNCTTTCCAAACTCAAGTACAAGATCACCAAGGTGTTTTNTTTATTGGTGATATTTCT
GCTGGTAATTTTGTACCNCCATATAAAGTACTANAGGATGGTTCAAACGCTTTCAAATTA
TTATCAAATATTTATTTATTATTATTAATTTTTATAATTTCNTTATTATTTATCTAAACA
AAAAAAAAACAAATAAATAAAAAACATATA
sequence update 2002.10.25
Translated Amino Acid sequence 
**k**kk*ilinii*kfyl*qnn*yivk*f*ni*kifi***IKMKEYKKIILYSFLVFLI
LCFAKPSLSDDPLTTSTTTTTATALPTTSAASTAKVTTTTTTTGSPASTTTTGAPTSTTG
ASTSTTGAPSSSSSSNETTPTATPTKKPVTPTPSSTSSSSSSSEVTSSSSESSAGEHPCA
TDVFDSMSNSGN---

---DDLYFSNGTVCMEXSSEYPYYQLGQLLNGASDQYNXGNVNFKSVSKLFXGFPTIEYQ
LYNNYKAIXSMMNGTIDTXQYDXLRLNXXFLHDQXYNNPNPSIDXSEVANSFFLXXQICI
TVQVVGNLPCVGLSPXLGGQVPNAVWVELLIPFSDXQVYPNAXISSIXFQTQVQDHQGVX
FIGDISAGNFVPPYKVLXDGSNAFKLLSNIYLLLLIFIISLLFI*tkkkqinkkhi
Translated Amino Acid sequence (All Frames) 
Frame A:
nnknnkknky**ilfknfiyskitnil*nnfrifkkysynnk*k*knikklyyivf*ff*
fyvlqnhlfqmtl*qlqqqqqqqlhyqrhrqhqqqr*qqqpqlqdhqhqpqlqehqhqlq
ehqhqlqehhhhhlhrmkqlqlqhqlknl*hqhhhqhhhhhhhlk*hhphpnhqlvnihv
qlmfliv*vilvi---

---g*sllfkwyglygxvigisilstwsiikwcfrsv*xw*ckfqir**tfxrfsnyrvs
iiq*lqsnhxndewynryxsi*xfeiefxxps*sxl**sksky*l**scklflfxxsnly
yrssgw*ftlcwfixxlgwssskcsmg*tfnsxl*xsslskcxyq*yxfpnsstrsprcf
xyw*yfcw*fctxi*stxgwfkrfqiiikylfiiinfynfxiiylnkkktnk*kty

Frame B:
iikiikkininkyylkilfiak*liyckiileylknihiiinkneri*knyii*ffsffn
fmfcktisfr*pfnnfnnnnnsncttndigsinskgnnnnhnyritsinhnyrstninyr
sininyrstiiiifie*nnsncntn*ktcntntiiniiiiiii*sniiliriisw*tsmc
n*cf**ye*fw*f---

---DDLYFSNGTVCMEXSSEYPYYQLGQLLNGASDQYNXGNVNFKSVSKLFXGFPTIEYQ
LYNNYKAIXSMMNGTIDTXQYDXLRLNXXFLHDQXYNNPNPSIDXSEVANSFFLXXQICI
TVQVVGNLPCVGLSPXLGGQVPNAVWVELLIPFSDXQVYPNAXISSIXFQTQVQDHQGVX
FIGDISAGNFVPPYKVLXDGSNAFKLLSNIYLLLLIFIISLLFI*tkkkqinkkhi

Frame C:
**k**kk*ilinii*kfyl*qnn*yivk*f*ni*kifi***IKMKEYKKIILYSFLVFLI
LCFAKPSLSDDPLTTSTTTTTATALPTTSAASTAKVTTTTTTTGSPASTTTTGAPTSTTG
ASTSTTGAPSSSSSSNETTPTATPTKKPVTPTPSSTSSSSSSSEVTSSSSESSAGEHPCA
TDVFDSMSNSGN---

---miftfqmvrfvwxshrnihtinlvny*mvlpisitlvm*isnplvnflxvfqlssin
ytiitkqsxq**mvqsihxnmxf*d*ixxsfminxiiiqiqvltxvklqtlsfxxfkfvl
pfkwlviylvlvyxxtwvvkfqmqyglnf*fxslxfkfiqmllsvvslsklkykitkvfx
llvifllvilyxhikyxrmvqtlsnyyqifiyyy*fl*fxyylskqkknk*ikni
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM140 (CHM140Q) /CSM/CH/CHM1-B/CHM140Q.Seq.d/                       1152   0.0
CHR283 (CHR283Q) /CSM/CH/CHR2-D/CHR283Q.Seq.d/                       1074   0.0
CHI503 (CHI503Q) /CSM/CH/CHI5-A/CHI503Q.Seq.d/                       1074   0.0
CHS395 (CHS395Q) /CSM/CH/CHS3-D/CHS395Q.Seq.d/                       1068   0.0
CHS330 (CHS330Q) /CSM/CH/CHS3-B/CHS330Q.Seq.d/                       1068   0.0
AHM266 (AHM266Q) /CSM/AH/AHM2-C/AHM266Q.Seq.d/                       1063   0.0
SHJ588 (SHJ588Q) /CSM/SH/SHJ5-D/SHJ588Q.Seq.d/                       1057   0.0
AHM661 (AHM661Q) /CSM/AH/AHM6-C/AHM661Q.Seq.d/                       1057   0.0
AHI234 (AHI234Q) /CSM/AH/AHI2-B/AHI234Q.Seq.d/                       1041   0.0
AHF324 (AHF324Q) /CSM/AH/AHF3-A/AHF324Q.Seq.d/                       1033   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    44   1e-05  8
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   2e-04  10
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    44   3e-04  10
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38   0.002  12
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    40   0.004  10
AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    36   0.006  8
AC126867|AC126867.4 Rattus norvegicus clone CH230-49B18, WORKING DRAFT SEQUENCE, 1 ordered piece.    54   0.006  1
AC095285|AC095285.5 Rattus norvegicus clone CH230-11A8, WORKING DRAFT SEQUENCE, 1 ordered piece.    54   0.006  1
AC023719|AC023719.4 Drosophila melanogaster X BAC RP98-4L24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence.    40   0.007  6
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   0.009  12
dna update 2005. 4. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001055_503(CP001055|pid:none) Elusimicrobium minutum Pei191, c...    35   5.5
protein update 2008.11. 3
PSORT 

 psg: 1.00  gvh: 0.82  alm: 0.19  top: 0.20  tms: 0.07  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 1.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 32.0 %: extracellular, including cell wall
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for CHM140 is pla
5' end seq. ID CHM140F
5' end seq. 
>CHM140F.Seq
AATAATAAAAATAATAAAAAAAATAAATATTAATAAATATTATTTAAAAATTTTATTTAT
AGCAAAATAACTAATATATTGTAAAATAATTTTAGAATATTTAAAAAATATTCATATAAT
AATAAATAAAAATGAAAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTTTTTTAA
TTTTATGTTTTGCAAAACCATCTCTTTCAGATGACCCTTTAACAACTTCAACAACAACAA
CAACAGCAACTGCACTACCAACGACATCGGCAGCATCAACAGCAAAGGTAACAACAACAA
CCACAACTACAGGATCACCAGCATCAACCACAACTACAGGAGCACCAACATCAACTACAG
GAGCATCAACATCAACTACAGGAGCACCATCATCATCATCTTCATCGAATGAAACAACTC
CAACTGCAACACCAACTAAAAAACCTGTAACACCAACACCATCATCAACATCATCATCAT
CATCATCATCTGAAGTAACATCATCCTCATCCGAATCATCAGCTGGTGAACATCCATGTG
CAACTGATGTTTTTGATAGTATGAGTAATTCTGGTAATTTNNNNNNNNNN
Length of 5' end seq. 590
3' end seq. ID CHM140Z
3' end seq. 
>CHM140Z.Seq
NNNNNNNNNNGGATGATCTTTACTTTTCAAATGGTACGGTTTGTATGGAANAGTCATCGG
AATATCCATACTATCAACTTGGTCAATTATTAAATGGTGCTTCCGATCAGTATAACNCTG
GTAATGTAAATTTCAAATCCGTTAGTAAACTTTTTANAGGTTTTCCAACTATCGAGTATC
AATTATACAATAATTACAAAGCAATCATNTCAATGATGAATGGTACAATCGATACATNTC
AATATGATNTTTTGAGATTGAATTTNTTNTTCCTTCATGATCAATNTTATAATAATCCAA
ATCCAAGTATTGACTNTAGTGAAGTTGCAAACTCTTTCTTTTTANATNTTCAAATTTGTA
TTACCGTTCAAGTGGTTGGTAATTTACCTTGTGTTGGTTTATCNCCANACTTGGGTGGTC
AAGTTCCAAATGCAGTATGGGTTGAACTTTTAATTCCNTTCTCTGATNTTCAAGTTTATC
CAAATGCTNTTATCAGTAGTATCNCTTTCCAAACTCAAGTACAAGATCACCAAGGTGTTT
TNTTTATTGGTGATATTTCTGCTGGTAATTTTGTACCNCCATATAAAGTACTANAGGATG
GTTCAAACGCTTTCAAATTATTATCAAATATTTATTTATTATTATTAATTTTTATAATTT
CNTTATTATTTATCTAAACAAAAAAAAAACAAATAAATAAAAAACATATA
Length of 3' end seq. 710
Connected seq. ID CHM140P
Connected seq. 
>CHM140P.Seq
AATAATAAAAATAATAAAAAAAATAAATATTAATAAATATTATTTAAAAATTTTATTTAT
AGCAAAATAACTAATATATTGTAAAATAATTTTAGAATATTTAAAAAATATTCATATAAT
AATAAATAAAAATGAAAGAATATAAAAAAATTATATTATATAGTTTTTTAGTTTTTTTAA
TTTTATGTTTTGCAAAACCATCTCTTTCAGATGACCCTTTAACAACTTCAACAACAACAA
CAACAGCAACTGCACTACCAACGACATCGGCAGCATCAACAGCAAAGGTAACAACAACAA
CCACAACTACAGGATCACCAGCATCAACCACAACTACAGGAGCACCAACATCAACTACAG
GAGCATCAACATCAACTACAGGAGCACCATCATCATCATCTTCATCGAATGAAACAACTC
CAACTGCAACACCAACTAAAAAACCTGTAACACCAACACCATCATCAACATCATCATCAT
CATCATCATCTGAAGTAACATCATCCTCATCCGAATCATCAGCTGGTGAACATCCATGTG
CAACTGATGTTTTTGATAGTATGAGTAATTCTGGTAATTT----------GGATGATCTT
TACTTTTCAAATGGTACGGTTTGTATGGAANAGTCATCGGAATATCCATACTATCAACTT
GGTCAATTATTAAATGGTGCTTCCGATCAGTATAACNCTGGTAATGTAAATTTCAAATCC
GTTAGTAAACTTTTTANAGGTTTTCCAACTATCGAGTATCAATTATACAATAATTACAAA
GCAATCATNTCAATGATGAATGGTACAATCGATACATNTCAATATGATNTTTTGAGATTG
AATTTNTTNTTCCTTCATGATCAATNTTATAATAATCCAAATCCAAGTATTGACTNTAGT
GAAGTTGCAAACTCTTTCTTTTTANATNTTCAAATTTGTATTACCGTTCAAGTGGTTGGT
AATTTACCTTGTGTTGGTTTATCNCCANACTTGGGTGGTCAAGTTCCAAATGCAGTATGG
GTTGAACTTTTAATTCCNTTCTCTGATNTTCAAGTTTATCCAAATGCTNTTATCAGTAGT
ATCNCTTTCCAAACTCAAGTACAAGATCACCAAGGTGTTTTNTTTATTGGTGATATTTCT
GCTGGTAATTTTGTACCNCCATATAAAGTACTANAGGATGGTTCAAACGCTTTCAAATTA
TTATCAAATATTTATTTATTATTATTAATTTTTATAATTTCNTTATTATTTATCTAAACA
AAAAAAAAACAAATAAATAAAAAACATATA
Length of connected seq. 1280
Full length Seq ID -
Full length Seq. -
Length of full length seq. -