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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHM132
Library CH
(Link to library)
Clone ID CHM132
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16483-1
Original site URL
Representative seq. ID CHM132E
(Link to Original site)
Representative DNA sequence 
>CHM132 (CHM132Q) /CSM/CH/CHM1-B/CHM132Q.Seq.d/
AAGATAATTTTAAGTTTAATAGTATTTTTTGCAACAATTTCGTTAGTTGCAAATGCAAGT
GAATCATATTGGGCAATTAGAACTGATTTAAGAAAATGTGCATATCCTATGTGCGGTGGT
TATTTCGTTCGTGAAGTTGGTTCAAATAAATCAGAAGTTTATGTTAAGTCATTAAATCAA
ACAGTGAAGGGTGGAGGATCAACAGTTGATGAATCACTATATAAATTTGCACCATCATAT
ACGGTAGTTGTAAAAGGTGATATTAAAAAAGATGAGATTATAGTATCAAAAATCTTTAGA
CTATTACCAAAGCCAGATAAACCATTCAATTTCGATTNTGAATTGAATAATTTCTATATT
GTAGATTCAAAAGAAACCAATTCAAATATTGAAATTAAGAAATTAAATAGTAACAAATCA
GAGAAACTAAACTCAATTGAAAATAGTTACTCACAAGATGTATCGTTTGTTCCAATGGAT
TGGTTGGAATATAAGGTTACCACTGGTGAATCTGTGTTCACAGTTAGTGGAAGAATAGAT
TCAAATAAAACCGTCTCCATAGATTATATGTTTATTAGTTTACCTGATCCAAAATTATGT
CCAAAGGAATTAATTGCTGTTANATGTGCCAATGGNACAATTCCAACCTATACTATCGCT
GCAACTCGTTGTTTATCATTCAGTGGTTGTGNACATANAGGAATTTGTCCNTTGGTTGTT
CCAGGTTGTTNTGGTGGATACNCTTTAAAATNATATGNGTCAAAACCAAATGGTTGTCCN
CGTTATTATTGCATCCCATCATTTTTATCTTAATTTATTATTCCCCAATCAAAATTCAAA
AAATTAATTAAAAAAAAAAAATAAANAATTAAAAACCNTAAAAANTA
sequence update 2002.10.27
Translated Amino Acid sequence 
KIILSLIVFFATISLVANASESYWAIRTDLRKCAYPMCGGYFVREVGSNKSEVYVKSLNQ
TVKGGGSTVDESLYKFAPSYTVVVKGDIKKDEIIVSKIFRLLPKPDKPFNFDXELNNFYI
VDSKETNSNIEIKKLNSNKSEKLNSIENSYSQDVSFVPMDWLEYKVTTGESVFTVSGRID
SNKTVSIDYMFISLPDPKLCPKELIAVXCANGTIPTYTIAATRCLSFSGCXHXGICPLVV
PGCXGGYXLKXYXSKPNGCPRYYCIPSFLS*fiipqskfkklikkkk*xiknxkx
Translated Amino Acid sequence (All Frames) 
Frame A:
KIILSLIVFFATISLVANASESYWAIRTDLRKCAYPMCGGYFVREVGSNKSEVYVKSLNQ
TVKGGGSTVDESLYKFAPSYTVVVKGDIKKDEIIVSKIFRLLPKPDKPFNFDXELNNFYI
VDSKETNSNIEIKKLNSNKSEKLNSIENSYSQDVSFVPMDWLEYKVTTGESVFTVSGRID
SNKTVSIDYMFISLPDPKLCPKELIAVXCANGTIPTYTIAATRCLSFSGCXHXGICPLVV
PGCXGGYXLKXYXSKPNGCPRYYCIPSFLS*fiipqskfkklikkkk*xiknxkx


Frame B:
r*f*v**yflqqfr*lqmqvnhigqleli*envhilcavvisfvklvqinqkfmlsh*ik
q*rvedqqlmnhyinlhhhir*l*kvilkkmrl*yqksldyyqsqinhsisixn*iisil
*iqkkpiqilklrn*ivtnqrn*tqlkivthkmyrlfqwigwnirlplvnlcsqlvee*i
qikpsp*iicllvyliqnyvqrn*lllxvpmxqfqpilslqlvvyhsvvvxixefvxwlf
qvvxvdtl*nxmxqnqmvvxviiashhfylnllfpnqnskn*lkkknkxlktxkx


Frame C:
dnfkfnsifcnnfvsckck*iilgn*n*fkkmcisyvrwlfrs*swfk*irslc*viksn
segwrins**iti*ictiiygsckr*y*kr*dysiknl*titkar*tiqfrx*ie*flyc
rfkrnqfky*n*eik**qiretkln*k*lltrcivcsnglvgi*gyhw*icvhs*wknrf
k*nrlhrlyvy*ft*skimskginccxmcqwxnsnlyyrcnslfiiqwlxtxrnlsxgcs
rlxwwixfkxixvktkwlsxlllhpiifiliyyspikiqkin*kkkixn*kp*kx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM132 (CHM132Q) /CSM/CH/CHM1-B/CHM132Q.Seq.d/                       1594   0.0
SSA302 (SSA302Q) /CSM/SS/SSA3-A/SSA302Q.Seq.d/                       1572   0.0
SSJ364 (SSJ364Q) /CSM/SS/SSJ3-C/SSJ364Q.Seq.d/                       1402   0.0
SSF374 (SSF374Q) /CSM/SS/SSF3-D/SSF374Q.Seq.d/                       1227   0.0
SSI216 (SSI216Q) /CSM/SS/SSI2-A/SSI216Q.Seq.d/                       1178   0.0
SSL161 (SSL161Q) /CSM/SS/SSL1-C/SSL161Q.Seq.d/                       1154   0.0
SSD388 (SSD388Q) /CSM/SS/SSD3-D/SSD388Q.Seq.d/                       1138   0.0
SSM142 (SSM142Q) /CSM/SS/SSM1-B/SSM142Q.Seq.d/                       1126   0.0
SSH142 (SSH142Q) /CSM/SS/SSH1-B/SSH142Q.Seq.d/                       1092   0.0
SSD122 (SSD122Q) /CSM/SS/SSD1-A/SSD122Q.Seq.d/                       1061   0.0
own update 2002.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116921|AC116921.2 Dictyostelium discoideum chromosome 2 map 4624505-4657775 strain AX4, complete sequence.  1586   0.0    1
AC145258|AC145258.2 Felis catus clone RP86-315M6, WORKING DRAFT SEQUENCE, 4 ordered pieces.    52   0.018  1
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          32   0.068  20
AE006797|AE006797.1 Sulfolobus solfataricus section 156 of 272 of the complete genome.    50   0.069  1
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    38   0.14   8
M10126|M10126.1 Leishmania tarentolae kinetoplast pre-edited mitochondrial maxicircle DNA complete transcribed region and flanks.    38   0.21   4
BW255350|BW255350.1 Ciona intestinalis cDNA, clone:cicl035j16, 5' end, single read.    48   0.27   1
AB015472|AB015472.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1.    36   0.30   3
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence.    30   0.33   12
AP006710|AP006710.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT09H02, TM0593a.    34   0.35   6
dna update 2005. 4. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...   490   e-137
AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...    86   2e-15
AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...    71   5e-11
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...    55   3e-06
CP001037_1830(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    45   0.003
CP000934_2920(CP000934|pid:none) Cellvibrio japonicus Ueda107, c...    40   0.13
AM746676_6769(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    36   1.9
CP000282_3256(CP000282|pid:none) Saccharophagus degradans 2-40, ...    34   5.4
T16840(T16840)hypothetical protein T10E10.4 - Caenorhabditis ele...    34   7.1
EF083471_1(EF083471|pid:none) Picea sitchensis clone WS02716_L14...    34   7.1
protein update 2008.11. 9
PSORT 

 psg: 0.99  gvh: 0.70  alm: 0.39  top: 0.47  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: extracellular, including cell wall
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: nuclear

>> prediction for CHM132 is exc
5' end seq. ID CHM132F
5' end seq. 
>CHM132F.Seq
AAGATAATTTTAAGTTTAATAGTATTTTTTGCAACAATTTCGTTAGTTGCAAATGCAAGT
GAATCATATTGGGCAATTAGAACTGATTTAAGAAAATGTGCATATCCTATGTGCGGTGGT
TATTTCGTTCGTGAAGTTGGTTCAAATAAATCAGAAGTTTATGTTAAGTCATTAAATCAA
ACAGTGAAGGGTGGAGGATCAACAGTTGATGAATCACTATATAAATTTGCACCATCATAT
ACGGTAGTTGTAAAAGGTGATATTAAAAAAGATGAGATTATAGTATCAAAAATCTTTAGA
CTATTACCAAAGCCAGATAAACCATTCAATTTCGATTCTGAATTGAATAATTTCTATATT
GTAGATTCAAAAGAAACCAATTCAAATATTGAAATTAAGAAATTAAATAGTAACAAATCA
GAGAAACTAAACTCAATTGAAAATAGTTACTCACAAGATGTATCGTTTGTTCCAATGGAT
TGGTTGGAATATAAGGTTACCACTGGTGAATCTGTGTTCACAGTTAGTGGAAGAATAGAT
TCAAATAAAACCGTCTCCATAGATTATATGTTTATTAGTTTACCTGATCCNNNNNNNNNN
Length of 5' end seq. 600
3' end seq. ID CHM132Z
3' end seq. 
>CHM132Z.Seq
NNNNNNNNNNTACGGTAGTTGTAAAAGGTGATATTAAAAAAGATGAGATTATAGTATCAA
AAATNTTTAGACTATTACCAAAGCCAGATAAACCATTCAATTTCGATTTTGAATTGAATA
ATTTNTATATTGTANATTCAAAANAAACCNATTCAAATATTGAAATTAAGAAATTAAATA
GTAACNAATCANAGAAACTAAACTCAATTGAAAATAGTTACTCNCAANATGNATNGTTTG
TTCCAATGGATTGGTTGGAANATAAGGTTACCNCTGGNGAATCTGTGTTCNCAGTTAGTG
GAANAATANATTCAAATAAAACCGTNTCCATANATTATATGTTTATTAGTTTACCTGATC
CAAAATTATGTCCAAAGGAATTAATTGCTGTTANATGTGCCAATGGNACAATTCCAACCT
ATACTATCGCTGCAACTCGTTGTTTATCATTCAGTGGTTGTGNACATANAGGAATTTGTC
CNTTGGTTGTTCCAGGTTGTTNTGGTGGATACNCTTTAAAATNATATGNGTCAAAACCAA
ATGGTTGTCCNCGTTATTATTGCATCCCATCATTTTTATCTTAATTTATTATTCCCCAAT
CAAAATTCAAAAAATTAATTAAAAAAAAAAAATAAANAATTAAAAACCNTAAAAANTA
Length of 3' end seq. 658
Connected seq. ID CHM132P
Connected seq. 
>CHM132P.Seq
AAGATAATTTTAAGTTTAATAGTATTTTTTGCAACAATTTCGTTAGTTGCAAATGCAAGT
GAATCATATTGGGCAATTAGAACTGATTTAAGAAAATGTGCATATCCTATGTGCGGTGGT
TATTTCGTTCGTGAAGTTGGTTCAAATAAATCAGAAGTTTATGTTAAGTCATTAAATCAA
ACAGTGAAGGGTGGAGGATCAACAGTTGATGAATCACTATATAAATTTGCACCATCATAT
ACGGTAGTTGTAAAAGGTGATATTAAAAAAGATGAGATTATAGTATCAAAAATCTTTAGA
CTATTACCAAAGCCAGATAAACCATTCAATTTCGATTCTGAATTGAATAATTTCTATATT
GTAGATTCAAAAGAAACCAATTCAAATATTGAAATTAAGAAATTAAATAGTAACAAATCA
GAGAAACTAAACTCAATTGAAAATAGTTACTCACAAGATGTATCGTTTGTTCCAATGGAT
TGGTTGGAATATAAGGTTACCACTGGTGAATCTGTGTTCACAGTTAGTGGAAGAATAGAT
TCAAATAAAACCGTCTCCATAGATTATATGTTTATTAGTTTACCTGATCC----------
TACGGTAGTTGTAAAAGGTGATATTAAAAAAGATGAGATTATAGTATCAAAAATNTTTAG
ACTATTACCAAAGCCAGATAAACCATTCAATTTCGATTTTGAATTGAATAATTTNTATAT
TGTANATTCAAAANAAACCNATTCAAATATTGAAATTAAGAAATTAAATAGTAACNAATC
ANAGAAACTAAACTCAATTGAAAATAGTTACTCNCAANATGNATNGTTTGTTCCAATGGA
TTGGTTGGAANATAAGGTTACCNCTGGNGAATCTGTGTTCNCAGTTAGTGGAANAATANA
TTCAAATAAAACCGTNTCCATANATTATATGTTTATTAGTTTACCTGATCCAAAATTATG
TCCAAAGGAATTAATTGCTGTTANATGTGCCAATGGNACAATTCCAACCTATACTATCGC
TGCAACTCGTTGTTTATCATTCAGTGGTTGTGNACATANAGGAATTTGTCCNTTGGTTGT
TCCAGGTTGTTNTGGTGGATACNCTTTAAAATNATATGNGTCAAAACCAAATGGTTGTCC
NCGTTATTATTGCATCCCATCATTTTTATCTTAATTTATTATTCCCCAATCAAAATTCAA
AAAATTAATTAAAAAAAAAAAATAAANAATTAAAAACCNTAAAAANTA
Length of connected seq. 1238
Full length Seq ID CHM132E
Full length Seq. 
>CHM132E.Seq
AAGATAATTTTAAGTTTAATAGTATTTTTTGCAACAATTTCGTTAGTTGCAAATGCAAGT
GAATCATATTGGGCAATTAGAACTGATTTAAGAAAATGTGCATATCCTATGTGCGGTGGT
TATTTCGTTCGTGAAGTTGGTTCAAATAAATCAGAAGTTTATGTTAAGTCATTAAATCAA
ACAGTGAAGGGTGGAGGATCAACAGTTGATGAATCACTATATAAATTTGCACCATCATAT
ACGGTAGTTGTAAAAGGTGATATTAAAAAAGATGAGATTATAGTATCAAAAATCTTTAGA
CTATTACCAAAGCCAGATAAACCATTCAATTTCGATTNTGAATTGAATAATTTCTATATT
GTAGATTCAAAAGAAACCAATTCAAATATTGAAATTAAGAAATTAAATAGTAACAAATCA
GAGAAACTAAACTCAATTGAAAATAGTTACTCACAAGATGTATCGTTTGTTCCAATGGAT
TGGTTGGAATATAAGGTTACCACTGGTGAATCTGTGTTCACAGTTAGTGGAAGAATAGAT
TCAAATAAAACCGTCTCCATAGATTATATGTTTATTAGTTTACCTGATCCAAAATTATGT
CCAAAGGAATTAATTGCTGTTANATGTGCCAATGGNACAATTCCAACCTATACTATCGCT
GCAACTCGTTGTTTATCATTCAGTGGTTGTGNACATANAGGAATTTGTCCNTTGGTTGTT
CCAGGTTGTTNTGGTGGATACNCTTTAAAATNATATGNGTCAAAACCAAATGGTTGTCCN
CGTTATTATTGCATCCCATCATTTTTATCTTAATTTATTATTCCCCAATCAAAATTCAAA
AAATTAATTAAAAAAAAAAAATAAANAATTAAAAACCNTAAAAANTA
Length of full length seq. 887