>CHM119 (CHM119Q) /CSM/CH/CHM1-A/CHM119Q.Seq.d/
TTACTAATATATATTTTTTTAATTTAAAAAAATGTTAATAAATAAAATTTTATTTTTATT
TTTTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTTATACTTTATCTGTTAA
AGGAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAATTACTGAAATTTTGTT
AACTTCCCAAAAAATATTACCAGATTACTCAATTACATTCACTTGTGAAATTCCATCTGC
CAATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAATTAGCTGGAAAATTAAC
TCTAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCTATGATATTAAAGCCAA
TCAAATTCCACTACCATTACCAACTGANGTTAAATGGGAACCACCAACAATGGCTGGTAC
AGCTGCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATGTTACAACTCTTCCTXX
XXXXXXXX

y*yiff*FKKMLINKILFLFFILSLTIFNIVDAGYTLSVKGKKLIYTGANVDFKITEILL
TSQKILPDYSITFTCEIPSANSPVCTSMDMDFTKLAGKLTLRGANLKTPNIVIAYDIKAN
QIPLPLPTXVKWEPPTMAGTAALMTGDFLLFGEDVTTL---

Frame A:
lliyifli*knvnk*nfififysitnni*yc*cwlyfic*rkkvniywcqcrfqny*nfv
nfpknitrllnyihl*nsicq*pclyeygyglykiswkinskgskfknpkysncl*y*sq
snsttitn*x*mgttnngwyscsydwrfliiw*rcynss---


Frame B:
y*yiff*FKKMLINKILFLFFILSLTIFNIVDAGYTLSVKGKKLIYTGANVDFKITEILL
TSQKILPDYSITFTCEIPSANSPVCTSMDMDFTKLAGKLTLRGANLKTPNIVIAYDIKAN
QIPLPLPTXVKWEPPTMAGTAALMTGDFLLFGEDVTTL---


Frame C:
tniyffnlkkc**ikfyfyflfyh*qylillmlvilyllkeks*yilvpm*iskllkfc*
lpkkyyqitqlhslvkfhlpialfvrvwiwtlqn*len*l*geqi*kpqi**lpmilkpi
kfhyhyqlxlngnhqqwlvqlll*leisyylvkmlqlf---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB874 (SHB874Q) /CSM/SH/SHB8-D/SHB874Q.Seq.d/                        815   0.0
SHL869 (SHL869Q) /CSM/SH/SHL8-C/SHL869Q.Seq.d/                        815   0.0
SHL629 (SHL629Q) /CSM/SH/SHL6-B/SHL629Q.Seq.d/                        815   0.0
SHL434 (SHL434Q) /CSM/SH/SHL4-B/SHL434Q.Seq.d/                        815   0.0
SHL431 (SHL431Q) /CSM/SH/SHL4-B/SHL431Q.Seq.d/                        815   0.0
SHL371 (SHL371Q) /CSM/SH/SHL3-C/SHL371Q.Seq.d/                        815   0.0
SHL351 (SHL351Q) /CSM/SH/SHL3-C/SHL351Q.Seq.d/                        815   0.0
SHL288 (SHL288Q) /CSM/SH/SHL2-D/SHL288Q.Seq.d/                        815   0.0
SHL231 (SHL231Q) /CSM/SH/SHL2-B/SHL231Q.Seq.d/                        815   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL138716|AL138716.6 Human DNA sequence from clone CTA-KB521C9 on chromosome 6.    34   0.019  5
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   0.022  7
CR548612|CR548612.1 Paramecium tetraurelia macronuclear largest chromosome, complete sequence.    38   0.15   13
AC019082|AC019082.5 Homo sapiens chromosome 8 clone RP11-347C18, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   0.24   7
AL445583|AL445583.9 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-130J18.    40   0.34   8
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    32   0.54   9
AC139889|AC139889.4 Rattus norvegicus clone CH230-64J21, WORKING DRAFT SEQUENCE, 42 unordered pieces.    34   0.69   8
AC023573|AC023573.2 Homo sapiens chromosome 2 clone RP11-413E7 map 2, WORKING DRAFT SEQUENCE, 39 unordered pieces.    32   0.72   8
AC093928|AC093928.2 Homo sapiens chromosome 3 clone RP11-241K3, complete sequence.    36   0.81   6
AE014852|AE014852.2 Plasmodium falciparum 3D7 chromosome 12, section 9 of 9 of the complete sequence.    40   0.90   5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001055_10(CP001055|pid:none) Elusimicrobium minutum Pei191, co...    34   1.9
CP000356_376(CP000356|pid:none) Sphingopyxis alaskensis RB2256, ...    33   2.5
CP000685_1388(CP000685|pid:none) Flavobacterium johnsoniae UW101...    33   4.3
AY524943_1(AY524943|pid:none) Rhampholeon temporalis isolate 3 r...    32   7.4
DQ385413_1(DQ385413|pid:none) Phrynosoma modestum recombination ...    32   7.4
AY524942_1(AY524942|pid:none) Rhampholeon temporalis isolate 1 r...    32   9.6
EF107106_29(EF107106|pid:none) Uncultured marine bacterium HF130...    32   9.6

 psg: 1.02  gvh: 0.61  alm: 0.23  top: 0.40  tms: 0.07  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHM119 is end

>CHM119F.Seq
TTACTAATATATATTTTTTTAATTTAAAAAAATGTTAATAAATAAAATTTTATTTTTATT
TTTTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGTTATACTTTATCTGTTAA
AGGAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAAATTACTGAAATTTTGTT
AACTTCCCAAAAAATATTACCAGATTACTCAATTACATTCACTTGTGAAATTCCATCTGC
CAATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAATTAGCTGGAAAATTAAC
TCTAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCCTATGATATTAAAGCCAA
TCAAATTCCACTACCATTACCAACTGANGTTAAATGGGAACCACCAACAATGGCTGGTAC
AGCTGCTCTTATGACTGGAGATTTCTTATTATTTGGTGAAGATGTTACAACTCTTCCTNN
NNNNNNNN