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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFG603
Library AF
(Link to library)
Clone ID AFG603
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15678-1
Original site URL
Representative seq. ID AFG603P
(Link to Original site)
Representative DNA sequence 
>AFG603 (AFG603Q) /CSM/AF/AFG6-A/AFG603Q.Seq.d/
TATAAATAACAAAAACAAAAATAACATAAAAAGAAAATGTCCGACGATGAAGATATGATG
TATGATGATGATGAATATTTTGATGATGATGAAGATCAAGATCAAAATGATAGTGAATCA
GAGGGTGTAGAAATTGAAAATCAATATTACAACTCAAAAGGTTTAATTGATGAATCAATT
CCAGATGCAATTAAAAGTTATGAAAAAGTTGTTGATTTAGAAAATGGTGAAAAGGGTGAA
TGGGGTTTCAAAGCATTGAAAAAGATAACAAAATTATATTTCCGTATTGGAGATTTCGAT
AATATGTTGGAAAGTTTTAAAAAATTCCTTCCATACACTAAATCATCGGCAAGTAGTAAT
TATATTGAAAAGGGTATCAATTCAGTTTTAGATATGGTTTCTTCAAGTAATACAATTGAA
TTAGATATGATTCAAAAAGTTTTCGATTTAACTTTAAAATCATTATTGGATACTAAAAAT
GAGAGAGTTTGGTTTAGAACAAATCTTAAATTAGCAAAATTATTATTTGAAAAAGCAGAA
TATGGTCGTTTAGCAAAGATTTTAAGAGATTTACATAAATCATGTGAATTAGAGGATGGT
ACTGATGATCAAAAGAAAGGTAGTCAATTGGTTGATATTTATGCTTTAGAGATTCAAATG
TATAXXXXXXXXXXAAACATTAGAACTCAAGTCCTTTTGAAACTTTTGNAACCATACACT
AGAATTAGAATTTCATTCATCTCTAAAGAATTGAATATTCCATCCAGTGATGTAGAGTCT
CTTTTAGTTTCTTTGATCCTTGATAATAAGATTAGAGGTTCAATTGATCAAGTNAATCAA
CAGTTAGNNCTTGATACTGCTAAATCTTCTGCTTATTGGAAATATACTTCAATTCATAAA
TGG
sequence update 2001. 6. 2
Translated Amino Acid sequence 
yk*qkqk*HKKKMSDDEDMMYDDDEYFDDDEDQDQNDSESEGVEIENQYYNSKGLIDESI
PDAIKSYEKVVDLENGEKGEWGFKALKKITKLYFRIGDFDNMLESFKKFLPYTKSSASSN
YIEKGINSVLDMVSSSNTIELDMIQKVFDLTLKSLLDTKNERVWFRTNLKLAKLLFEKAE
YGRLAKILRDLHKSCELEDGTDDQKKGSQLVDIYALEIQMY---

---NIRTQVLLKLLXPYTRIRISFISKELNIPSSDVESLLVSLILDNKIRGSIDQVNQQL
XLDTAKSSAYWKYTSIHKW
Translated Amino Acid sequence (All Frames) 
Frame A:
yk*qkqk*HKKKMSDDEDMMYDDDEYFDDDEDQDQNDSESEGVEIENQYYNSKGLIDESI
PDAIKSYEKVVDLENGEKGEWGFKALKKITKLYFRIGDFDNMLESFKKFLPYTKSSASSN
YIEKGINSVLDMVSSSNTIELDMIQKVFDLTLKSLLDTKNERVWFRTNLKLAKLLFEKAE
YGRLAKILRDLHKSCELEDGTDDQKKGSQLVDIYALEIQMY---

---kh*nsspfetfxtih*n*nfihl*rieysiq*crvsfsffdp***d*rfn*ssxstv
xx*yc*ifclleiyfns*m

Frame B:
innknknnikrkcptmki*cmmmmnilmmmkikikmivnqrv*klkinittqkv*lmnqf
qmqlkvmkklli*kmvkrvngvskh*kr*qnyisvleisiicwkvlknsfhtlnhrqvvi
ilkrvsiqf*iwflqviqln*i*fkkfsi*l*nhywilkmrefgleqiln*qnyylkkqn
mvv*qrf*eiyinhvn*rmvlmikrkvvnwlifml*rfkci---

---NIRTQVLLKLLXPYTRIRISFISKELNIPSSDVESLLVSLILDNKIRGSIDQVNQQL
XLDTAKSSAYWKYTSIHKW

Frame C:
*itktkit*kenvrr*rydv****if****rsrsk***irgcrn*ksilqlkrfn**ins
rcn*kl*ksc*frkw*kg*mgfqsiekdnkiifpywrfr*yvgkf*kipsih*iigk**l
y*kgyqfsfrygffk*yn*irydsksfrfnfkiiigy*k*eslv*nks*iskiii*ksri
wsfskdfkrft*im*irgwy**sker*sig*ylcfrdsnv---

---tlelksf*nfxnhtlelefhsslkn*ifhpvm*slf*fl*sliirlevqlikxins*
xlillnlllignilqfin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFG603 (AFG603Q) /CSM/AF/AFG6-A/AFG603Q.Seq.d/                       1524   0.0
VFC566 (VFC566Q) /CSM/VF/VFC5-C/VFC566Q.Seq.d/                       1088   0.0
VFE412 (VFE412Q) /CSM/VF/VFE4-A/VFE412Q.Seq.d/                       1039   0.0
VFB655 (VFB655Q) /CSM/VF/VFB6-C/VFB655Q.Seq.d/                       1037   0.0
VFE235 (VFE235Q) /CSM/VF/VFE2-B/VFE235Q.Seq.d/                       1033   0.0
SFK277 (SFK277Q) /CSM/SF/SFK2-D/SFK277Q.Seq.d/                       1033   0.0
AFG109 (AFG109Q) /CSM/AF/AFG1-A/AFG109Q.Seq.d/                       1029   0.0
AFE693 (AFE693Q) /CSM/AF/AFE6-D/AFE693Q.Seq.d/                       1029   0.0
AFA765 (AFA765Q) /CSM/AF/AFA7-C/AFA765Q.Seq.d/                       1003   0.0
SFH304 (SFH304Q) /CSM/SF/SFH3-A/SFH304Q.Seq.d/                        985   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BU877416|BU877416.1 V033G05 Populus flower cDNA library Populus balsamifera subsp.trichocarpa cDNA 5 prime, mRNA sequence.    40   2e-14  5
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    32   6e-09  19
CK101600|CK101600.1 F102P07.5pR Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA clone F102P07 5', mRNA sequence.    40   3e-07  3
BI746766|BI746766.1 rm31d12.y1 Meloidogyne arenaria egg pAMP1 v1 Chiapelli McCarter Meloidogyne arenaria cDNA 5' similar to TR:Q94899 Q94899 ALIEN PROTEIN ;, mRNA sequence.    48   4e-06  2
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   7e-06  11
CF207924|CF207924.1 CAB20002_IVa_Fa_G07 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20002_IVa_Fa_G07 5', mRNA sequence.    44   2e-04  2
AJ558788|AJ558788.1 Antirrhinum majus EST, clone 018_1_08_i07.     48   9e-04  2
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5.    32   0.001  15
BI138256|BI138256.1 F102P07Y Populus flower cDNA library Populus balsamifera subsp. trichocarpa cDNA, mRNA sequence.    40   0.001  2
AC006890|AC006890.1 Caenorhabditis elegans clone Y67D8x, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   0.001  14
dna update 2004. 3.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF144208_1(EF144208|pid:none) Populus trichocarpa clone PX0011_D...   196   7e-49
AP008207_1014(AP008207|pid:none) Oryza sativa (japonica cultivar...   192   2e-47
AP000815_2(AP000815|pid:none) Oryza sativa Japonica Group genomi...   192   2e-47
AC145330_16(AC145330|pid:none) Medicago truncatula clone mth2-17...   191   4e-47
U57758_1(U57758|pid:none) Drosophila melanogaster putative thyro...   190   6e-47
AF120268_1(AF120268|pid:none) Homo sapiens ALIEN (ALIEN) mRNA, c...   190   6e-47
AK222590_1(AK222590|pid:none) Homo sapiens mRNA for COP9 constit...   190   6e-47
AK146153_1(AK146153|pid:none) Mus musculus cDNA, RIKEN full-leng...   190   6e-47
(Q94899) RecName: Full=COP9 signalosome complex subunit 2;      ...   190   6e-47
L40388_1(L40388|pid:none) Homo sapiens thyroid receptor interact...   190   6e-47
protein update 2009. 4.21
PSORT 

 psg: 0.75  gvh: 0.18  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for AFG603 is nuc
5' end seq. ID AFG603F
5' end seq. 
>AFG603F.Seq
TATAAATAACAAAAACAAAAATAACATAAAAAGAAAATGTCCGACGATGAAGATATGATG
TATGATGATGATGAATATTTTGATGATGATGAAGATCAAGATCAAAATGATAGTGAATCA
GAGGGTGTAGAAATTGAAAATCAATATTACAACTCAAAAGGTTTAATTGATGAATCAATT
CCAGATGCAATTAAAAGTTATGAAAAAGTTGTTGATTTAGAAAATGGTGAAAAGGGTGAA
TGGGGTTTCAAAGCATTGAAAAAGATAACAAAATTATATTTCCGTATTGGAGATTTCGAT
AATATGTTGGAAAGTTTTAAAAAATTCCTTCCATACACTAAATCATCGGCAAGTAGTAAT
TATATTGAAAAGGGTATCAATTCAGTTTTAGATATGGTTTCTTCAAGTAATACAATTGAA
TTAGATATGATTCAAAAAGTTTTCGATTTAACTTTAAAATCATTATTGGATACTAAAAAT
GAGAGAGTTTGGTTTAGAACAAATCTTAAATTAGCAAAATTATTATTTGAAAAAGCAGAA
TATGGTCGTTTAGCAAAGATTTTAAGAGATTTACATAAATCATGTGAATTAGAGGATGGT
ACTGATGATCAAAAGAAAGGTAGTCAATTGGTTGATATTTATGCTTTAGAGATTCAAATG
TATA----------
Length of 5' end seq. 664
3' end seq. ID AFG603Z
3' end seq. 
>AFG603Z.Seq
----------AAACATTAGAACTCAAGTCCTTTTGAAACTTTTGNAACCATACACTAGAA
TTAGAATTTCATTCATCTCTAAAGAATTGAATATTCCATCCAGTGATGTAGAGTCTCTTT
TAGTTTCTTTGATCCTTGATAATAAGATTAGAGGTTCAATTGATCAAGTNAATCAACAGT
TAGNNCTTGATACTGCTAAATCTTCTGCTTATTGGAAATATACTTCAATTCATAAATGG
Length of 3' end seq. 229
Connected seq. ID AFG603P
Connected seq. 
>AFG603P.Seq
TATAAATAACAAAAACAAAAATAACATAAAAAGAAAATGTCCGACGATGAAGATATGATG
TATGATGATGATGAATATTTTGATGATGATGAAGATCAAGATCAAAATGATAGTGAATCA
GAGGGTGTAGAAATTGAAAATCAATATTACAACTCAAAAGGTTTAATTGATGAATCAATT
CCAGATGCAATTAAAAGTTATGAAAAAGTTGTTGATTTAGAAAATGGTGAAAAGGGTGAA
TGGGGTTTCAAAGCATTGAAAAAGATAACAAAATTATATTTCCGTATTGGAGATTTCGAT
AATATGTTGGAAAGTTTTAAAAAATTCCTTCCATACACTAAATCATCGGCAAGTAGTAAT
TATATTGAAAAGGGTATCAATTCAGTTTTAGATATGGTTTCTTCAAGTAATACAATTGAA
TTAGATATGATTCAAAAAGTTTTCGATTTAACTTTAAAATCATTATTGGATACTAAAAAT
GAGAGAGTTTGGTTTAGAACAAATCTTAAATTAGCAAAATTATTATTTGAAAAAGCAGAA
TATGGTCGTTTAGCAAAGATTTTAAGAGATTTACATAAATCATGTGAATTAGAGGATGGT
ACTGATGATCAAAAGAAAGGTAGTCAATTGGTTGATATTTATGCTTTAGAGATTCAAATG
TATA----------AAACATTAGAACTCAAGTCCTTTTGAAACTTTTGNAACCATACACT
AGAATTAGAATTTCATTCATCTCTAAAGAATTGAATATTCCATCCAGTGATGTAGAGTCT
CTTTTAGTTTCTTTGATCCTTGATAATAAGATTAGAGGTTCAATTGATCAAGTNAATCAA
CAGTTAGNNCTTGATACTGCTAAATCTTCTGCTTATTGGAAATATACTTCAATTCATAAA
TGG
Length of connected seq. 893
Full length Seq ID -
Full length Seq. -
Length of full length seq. -