CHL754
Library CH
(Link to library)
Clone ID CHL754
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10976-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHL754 (CHL754Q) /CSM/CH/CHL7-C/CHL754Q.Seq.d/
XXXXXXXXXXTACAAGATCAACAAGATATAAAAGAAAAGGAATTTCAATTTGAAAAACAA
CAATTATTAAGTCAAATTGATTCAATCACAACAAACATTCAAGAATATCAAGATAAATTC
AATAATTTACAACAAGAATTCAATACTCAACAAACTTTAAATCAACAAGAAACTCATAGA
TTAACTCAACAATTATATCAAATAAATACAGATTATAATGAAAAACAAACTCAATTACAA
TCGGAAATTAAAGATAATCAAACTATAAATGAACAATTAAATAAACAATTATCAGAAAAA
GATAAAGAAATTGAAAAACTTTCAAATCAACAAGAACAACAACAAGATGAAAAAATTAAT
AATCTTTTATTAGAAATTAAAGAAAAAGATTGTTTAATTGAAAGAATTAATCAACAACTT
TTAGAAAATATTGATTTAAATTCAAAATATCAACAATTACTTTTAGAATTTGAAAATTTT
AAATTAAATTCATCAAAAGAAAAAGAAAATCAATTAAATGAATTACAAAGTAAACAAGAT
GAAAGATTTAATCAATTAAATGATGAAAAACTTGAAAAAGAAAAACAATTACAATCAATT
GAAGATGAATTCAATCAATATAAACAACAACAATTAAGCTCAAATTCAAATAT
sequence update 2002. 9.10
Translated Amino Acid sequence
---QDQQDIKEKEFQFEKQQLLSQIDSITTNIQEYQDKFNNLQQEFNTQQTLNQQETHRL
TQQLYQINTDYNEKQTQLQSEIKDNQTINEQLNKQLSEKDKEIEKLSNQQEQQQDEKINN
LLLEIKEKDCLIERINQQLLENIDLNSKYQQLLLEFENFKLNSSKEKENQLNELQSKQDE
RFNQLNDEKLEKEKQLQSIEDEFNQYKQQQLSSNSN


Translated Amino Acid sequence (All Frames)
Frame A:
---trstrykrkgisi*kttiiksn*fnhnkhsrisr*iq*fttriqystnfkstrns*i
nstiisnkyrl**ktnsitign*r*snyk*tik*tiirkr*rn*ktfkstrtttr*kn**
sfirn*rkrlfn*kn*sttfrky*fkfkistitfri*kf*ikfikrkrksik*itk*tr*
ki*sik**kt*krktitin*r*iqsi*tttiklkfky


Frame B:
---QDQQDIKEKEFQFEKQQLLSQIDSITTNIQEYQDKFNNLQQEFNTQQTLNQQETHRL
TQQLYQINTDYNEKQTQLQSEIKDNQTINEQLNKQLSEKDKEIEKLSNQQEQQQDEKINN
LLLEIKEKDCLIERINQQLLENIDLNSKYQQLLLEFENFKLNSSKEKENQLNELQSKQDE
RFNQLNDEKLEKEKQLQSIEDEFNQYKQQQLSSNSN


Frame C:
---kinki*kkrnfnlknnny*vkliqsqqtfknikinsiiynknsilnkl*inkklid*
lnnyik*iqiimknklnynrklkiikl*mnn*innyqkkikklknfqinknnnkmkklii
fy*klkkkiv*lkelinnf*kili*iqninnyf*nlkiln*ihqkkkkin*mnykvnkmk
dlin*mmknlkkknnynqlkmnsininnnn*aqiqi


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHL754 (CHL754Q) /CSM/CH/CHL7-C/CHL754Q.Seq.d/ 932 0.0
SHC133 (SHC133Q) /CSM/SH/SHC1-B/SHC133Q.Seq.d/ 924 0.0
AHM218 (AHM218Q) /CSM/AH/AHM2-A/AHM218Q.Seq.d/ 920 0.0
AHI213 (AHI213Q) /CSM/AH/AHI2-A/AHI213Q.Seq.d/ 918 0.0
CHL191 (CHL191Q) /CSM/CH/CHL1-D/CHL191Q.Seq.d/ 908 0.0
AHI717 (AHI717Q) /CSM/AH/AHI7-A/AHI717Q.Seq.d/ 898 0.0
CHQ637 (CHQ637Q) /CSM/CH/CHQ6-B/CHQ637Q.Seq.d/ 841 0.0
AHF304 (AHF304Q) /CSM/AH/AHF3-A/AHF304Q.Seq.d/ 833 0.0
AHJ209 (AHJ209Q) /CSM/AH/AHJ2-A/AHJ209Q.Seq.d/ 821 0.0
AHG872 (AHG872Q) /CSM/AH/AHG8-C/AHG872Q.Seq.d/ 809 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF057019|AF057019.1 Dictyostelium discoideum interaptin (abpD) gene, complete cds. 932 0.0 6
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 34 1e-18 29
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 36 1e-15 30
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 42 1e-14 15
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 38 5e-14 27
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome. 42 1e-12 31
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 40 2e-12 18
CP000013|CP000013.1 Borrelia garinii PBi, complete genome. 34 2e-12 27
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome. 44 2e-12 27
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 40 4e-12 25
dna update 2005. 3.23
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B... 418 e-116
AM422018_415(AM422018|pid:none) Candidatus Phytoplasma australie... 89 1e-16
AM422018_797(AM422018|pid:none) Candidatus Phytoplasma australie... 88 2e-16
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p... 82 1e-14
CP001291_4282(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 76 7e-13
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat... 76 9e-13
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes... 75 1e-12
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028... 74 4e-12
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes... 73 8e-12
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co... 73 8e-12
protein update 2009. 5.19
PSORT

psg: 0.75 gvh: 0.32 alm: 0.61 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for CHL754 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHL754Z
3' end seq.
>CHL754Z.Seq
NNNNNNNNNNTACAAGATCAACAAGATATAAAAGAAAAGGAATTTCAATTTGAAAAACAA
CAATTATTAAGTCAAATTGATTCAATCACAACAAACATTCAAGAATATCAAGATAAATTC
AATAATTTACAACAAGAATTCAATACTCAACAAACTTTAAATCAACAAGAAACTCATAGA
TTAACTCAACAATTATATCAAATAAATACAGATTATAATGAAAAACAAACTCAATTACAA
TCGGAAATTAAAGATAATCAAACTATAAATGAACAATTAAATAAACAATTATCAGAAAAA
GATAAAGAAATTGAAAAACTTTCAAATCAACAAGAACAACAACAAGATGAAAAAATTAAT
AATCTTTTATTAGAAATTAAAGAAAAAGATTGTTTAATTGAAAGAATTAATCAACAACTT
TTAGAAAATATTGATTTAAATTCAAAATATCAACAATTACTTTTAGAATTTGAAAATTTT
AAATTAAATTCATCAAAAGAAAAAGAAAATCAATTAAATGAATTACAAAGTAAACAAGAT
GAAAGATTTAATCAATTAAATGATGAAAAACTTGAAAAAGAAAAACAATTACAATCAATT
GAAGATGAATTCAATCAATATAAACAACAACAATTAAGCTCAAATTCAAATAT
Length of 3' end seq. 653
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -