CHL705
Library CH
(Link to library)
Clone ID CHL705
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHL705P
(Link to Original site)
Representative DNA sequence
>CHL705 (CHL705Q) /CSM/CH/CHL7-A/CHL705Q.Seq.d/
GATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAAAATGNGGGTAA
AGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAAAATGTAGTTGTNCAATT
TGAAAATGTTGCAAATCAAGTTNTTGAAAAATTAAAAGTTGANCATCAAANACAANAATT
ATTAGGNGAAGTAAAACATGATTCATTAAAAAACTCTGCANCAAATTACATTNGGGGATT
ACTTGATAAAATTCAAAGTTNTTTNCCAAAANACAACAATAAAGTTTCAAAAGTTGAAAA
ANCATTTTCAAGNGGCCAAAATAATAATATCGGTAGCXXXXXXXXXXCCGAGGATATTCA
ATATCAATTAAATCATTTAAATCAACCATTCCCAAGATGACTATCATAATGATCAAACTG
AAGAATTAAAAGATGATGATTATAATTTTAATGATCAACAAATTAACAATGGTCAATTTG
AAAATAATGTTGAAGAATTTCCTGATTTAAATGATGCTAATGATAATTTTGAACAAGTTA
ACAACAACAACAACAACATCAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAA
AGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAG
TTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAG
TTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACT
CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG
ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGT
ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT
TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTT
CAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAAC
AACAAGTTCAAGCAACAAATGTNAACAACAAATCGTGAACAACTTAAAGTTATCAAAGAA
sequence update 2002.10.25
Translated Amino Acid sequence
ILSCIISTCXSNQISENXGKAINQKLNENIEKVENVVVQFENVANQVXEKLKVXHQXQXL
LGEVKHDSLKNSAXNYIXGLLDKIQSXXPKXNNKVSKVEKXFSXGQNNNIGS---

---RGYSISIKSFKSTIPKMTIIMIKLKN*kmmiiilminkltmvnlkimlknfli*mml
miilnklttttttsiiitittlklinqrkvlnklkll*rmkdfifkklkmlqrdymkkfi
ipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlk
mvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmki
nnnnkdnnkfkqqmxttnreqlkvike


Translated Amino Acid sequence (All Frames)
Frame A:
dfimyhfnmxi*snf*kxg*sn*skik*ky*ks*kcscxi*kcckssx*kiks*xsxtxi
irxskt*fikklcxklhxgit**nskxfxkxqq*sfks*kxifkxpk**yr*---

---prifnin*ii*inhsqddyhndqteelkdddynfndqqinngqfennveefpdlnda
ndnfeqvnnnnnninnnnnnnfkvdkskksaqqveialenerlylqevedaperlyeeih
nsnlnkavqeaeeierqqngngspavnshkivtqmgnvenneitneqdaieqaqhlqrie
ngedideyeaaqhevafldeneqdaaklqnemdqlellleeneeeqfsnknlqqlnenen
qqqqqgqqqvqatnvnnks*tt*syqr

Frame B:
ILSCIISTCXSNQISENXGKAINQKLNENIEKVENVVVQFENVANQVXEKLKVXHQXQXL
LGEVKHDSLKNSAXNYIXGLLDKIQSXXPKXNNKVSKVEKXFSXGQNNNIGS---

---RGYSISIKSFKSTIPKMTIIMIKLKN*kmmiiilminkltmvnlkimlknfli*mml
miilnklttttttsiiitittlklinqrkvlnklkll*rmkdfifkklkmlqrdymkkfi
ipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlk
mvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmki
nnnnkdnnkfkqqmxttnreqlkvike

Frame C:
fyhvsfqhvhlikflkmxvkqlikn*mkilkklkm*lxnlkmlqikxlkn*klxikxxny
*xk*nmih*ktlxqitxgdylikfkvxxqxttikfqklkxhfqxakiiisv---

---ediqyqlnhlnqpfpr*ls**sn*rikr**l*f**stn*qwsi*k*c*ris*fk*c*
**f*ts*qqqqqhq***q*ql*s**ikekcsts*ncfre*ktlssrs*rcsreti*rns*
fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*k
w*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ks
ttttrtttsssnkcxqqivnnlklsk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHA745 (SHA745Q) /CSM/SH/SHA7-B/SHA745Q.Seq.d/ 944 0.0
SHA660 (SHA660Q) /CSM/SH/SHA6-C/SHA660Q.Seq.d/ 944 0.0
SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/ 944 0.0
SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/ 944 0.0
CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/ 944 0.0
CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/ 944 0.0
CHP603 (CHP603Q) /CSM/CH/CHP6-A/CHP603Q.Seq.d/ 944 0.0
CHO814 (CHO814Q) /CSM/CH/CHO8-A/CHO814Q.Seq.d/ 944 0.0
CHO755 (CHO755Q) /CSM/CH/CHO7-C/CHO755Q.Seq.d/ 944 0.0
CHO654 (CHO654Q) /CSM/CH/CHO6-C/CHO654Q.Seq.d/ 944 0.0

own update 2002.10. 2
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 944 0.0 8
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 3e-28 14
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 2e-09 21
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 40 1e-08 29
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome. 36 3e-07 35
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 40 1e-06 29
AE017308|AE017308.1 Mycoplasma mobile 163K complete genome. 34 2e-06 26
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 36 2e-06 19
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 38 4e-06 20
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12 section 7 of 9 of the complete sequence. 36 1e-05 16
dna update 2005. 3.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 349 2e-98
(Q23MT7) RecName: Full=Probable beta-tubulin polyglutamylase; ... 47 0.001
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes... 44 0.010
AL844504_88(AL844504|pid:none) Plasmodium falciparum strain 3D7,... 44 0.013
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik... 44 0.013
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso... 42 0.029
AL034558_21(AL034558|pid:none) Plasmodium falciparum MAL3P2, com... 42 0.038
CR855913_1(CR855913|pid:none) Paramecium tetraurelia macronuclea... 42 0.049
AE014187_536(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 41 0.065
AF063866_46(AF063866|pid:none) Melanoplus sanguinipes entomopoxv... 41 0.084
protein update 2009. 4. 8
PSORT

psg: 0.93 gvh: 0.55 alm: 0.49 top: 0.47 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
8.0 %: vacuolar
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for CHL705 is nuc

5' end seq. ID CHL705F
5' end seq.
>CHL705F.Seq
GATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAAAATGNGGGTAA
AGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAAAATGTAGTTGTNCAATT
TGAAAATGTTGCAAATCAAGTTNTTGAAAAATTAAAAGTTGANCATCAAANACAANAATT
ATTAGGNGAAGTAAAACATGATTCATTAAAAAACTCTGCANCAAATTACATTNGGGGATT
ACTTGATAAAATTCAAAGTTNTTTNCCAAAANACAACAATAAAGTTTCAAAAGTTGAAAA
ANCATTTTCAAGNGGCCAAAATAATAATATCGGTAGCNNNNNNNNNN
Length of 5' end seq. 347
3' end seq. ID CHL705Z
3' end seq.
>CHL705Z.Seq
NNNNNNNNNNCCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCCAAGA
TGACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGATCA
ACAAATTAACAATGGTCAATTTGAAAATAATGTTGAAGAATTTCCTGATTTAAATGATGC
TAATGATAATTTTGAACAAGTTAACAACAACAACAACAACATCAATAATAATAACAATAA
CAACTTTAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAA
TGAAAGACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCA
TAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGG
TAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAA
TAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGA
AAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGA
AAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGA
AGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAA
TCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTNAACAACAAATCGTG
AACAACTTAAAGTTATCAAAGAA
Length of 3' end seq. 803
Connected seq. ID CHL705P
Connected seq.
>CHL705P.Seq
GATTTTATCATGTATCATTTCAACATGTNCATCTAATCAAATTTCTGAAAATGNGGGTAA
AGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGAAAATGTAGTTGTNCAATT
TGAAAATGTTGCAAATCAAGTTNTTGAAAAATTAAAAGTTGANCATCAAANACAANAATT
ATTAGGNGAAGTAAAACATGATTCATTAAAAAACTCTGCANCAAATTACATTNGGGGATT
ACTTGATAAAATTCAAAGTTNTTTNCCAAAANACAACAATAAAGTTTCAAAAGTTGAAAA
ANCATTTTCAAGNGGCCAAAATAATAATATCGGTAGC----------CCGAGGATATTCA
ATATCAATTAAATCATTTAAATCAACCATTCCCAAGATGACTATCATAATGATCAAACTG
AAGAATTAAAAGATGATGATTATAATTTTAATGATCAACAAATTAACAATGGTCAATTTG
AAAATAATGTTGAAGAATTTCCTGATTTAAATGATGCTAATGATAATTTTGAACAAGTTA
ACAACAACAACAACAACATCAATAATAATAACAATAACAACTTTAAAGTTGATAAATCAA
AGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAG
TTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAG
TTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACT
CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG
ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGT
ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT
TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTT
CAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAAC
AACAAGTTCAAGCAACAAATGTNAACAACAAATCGTGAACAACTTAAAGTTATCAAAGAA
Length of connected seq. 1130
Full length Seq ID -
Full length Seq. -
Length of full length seq. -