>CHL651 (CHL651Q) /CSM/CH/CHL6-C/CHL651Q.Seq.d/
XXXXXXXXXXANCAATCATNATCAACAANGGANGAAATGAAAAATAAATTCAAAGATTCN
NTTCTAANTCAAAGACAAGAATATANTGATATCTTTAATCAANTAAATGATTCAAAAAAA
GATAATTTANNATTAATTCAGGAATTAAATCAATTAAAAGGTNNAAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAACAGTAATAATACAAATAATAATAATAATAATAGTACGAATAATACAAATAGCAAT
ATAAAATCAAATTCATCACCAATTGTAAAATCAAATAATAATAATAGTAATAATAGTAGT
AATAGTAGCAGTAGTATTAATCATAATAGCTTTATAATAACACAAGAATCATTAAGTAAT
GGCGCTCAATCACCACATAATTTACAACCACA

---QSXSTXXEMKNKFKDSXLXQRQEYXDIFNQXNDSKKDNLXLIQELNQLKGXNNNNNN
NNNNNNNNNNNNNNNNNNNNNSNNTNNNNNNSTNNTNSNIKSNSSPIVKSNNNNSNNSSN
SSSSINHNSFIITQESLSNGAQSPHNLQP

Frame A:
---xixinxgxnek*iqrfxsxsktrix*yl*sxk*fkkr*fxinsgiksikrxk*****
*********************q**yk******ye*yk*qykikfitnckik*********
**q*y*s**lynntriik*wrsitt*fttt


Frame B:
---QSXSTXXEMKNKFKDSXLXQRQEYXDIFNQXNDSKKDNLXLIQELNQLKGXNNNNNN
NNNNNNNNNNNNNNNNNNNNNSNNTNNNNNNSTNNTNSNIKSNSSPIVKSNNNNSNNSSN
SSSSINHNSFIITQESLSNGAQSPHNLQP


Frame C:
---nhxqqxxk*kinskixf*xkdknixislix*miqkkiixx*frn*in*kvxiiiiii
iiiiiiiiiiiiiiiiiiiitviiqiiiiiivriiqiai*nqihhql*nqiiiiviivvi
vavvliiial**hknh*vmalnhhiiynh

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL651 (CHL651Q) /CSM/CH/CHL6-C/CHL651Q.Seq.d/                        153   3e-36
CHJ841 (CHJ841Q) /CSM/CH/CHJ8-B/CHJ841Q.Seq.d/                         38   0.11
VSE467 (VSE467Q) /CSM/VS/VSE4-C/VSE467Q.Seq.d/                         36   0.44
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/                36   0.44
SLE316 (SLE316Q) /CSM/SL/SLE3-A/SLE316Q.Seq.d/                         34   1.7
VSG310 (VSG310Q) /CSM/VS/VSG3-A/VSG310Q.Seq.d/                         32   6.9
VSF895 (VSF895Q) /CSM/VS/VSF8-D/VSF895Q.Seq.d/                         32   6.9
VSD368 (VSD368Q) /CSM/VS/VSD3-C/VSD368Q.Seq.d/                         32   6.9
VSC562 (VSC562Q) /CSM/VS/VSC5-C/VSC562Q.Seq.d/                         32   6.9
VHN873 (VHN873Q) /CSM/VH/VHN8-D/VHN873Q.Seq.d/                         32   6.9

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CN760508|CN760508.1 ID0AAA28CE10RM1 ApMS Acyrthosiphon pisum cDNA clone ID0AAA28CE105', mRNA sequence.    32   5.2    2
CN585277|CN585277.1 USDA-FP_128347 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP070_F07, mRNA sequence.    32   5.2    2
CN583755|CN583755.1 USDA-FP_126820 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP045_G04, mRNA sequence.    32   5.4    2
AC150614|AC150614.2 Callithrix jacchus clone CH259-445L5, WORKING DRAFT SEQUENCE, 8 ordered pieces.    42   8.3    1
AL355373|AL355373.4 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-351H22.    42   8.3    1
CR382296|CR382296.9 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-121H17.    42   8.3    1
AL121963|AL121963.10 Human DNA sequence from clone RP1-136O14 on chromosome 6q21-22.3  Contains a pseudogene similar to various (hypothetical) genes, the  COL10A1 gene for collagen type X alpha 1, a novel gene, the first  exon of the FRK gene for fyn-related kinase, ESTs, STSs, GSSs and a  putative CpG island.    42   8.3    1

 ***** No hits found ******

Lambda     K      H
   0.307    0.125    0.330

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 238,057,269

 psg: 0.50  gvh: 0.43  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for CHL651 is nuc

>CHL651Z.Seq
NNNNNNNNNNANCAATCATNATCAACAANGGANGAAATGAAAAATAAATTCAAAGATTCN
NTTCTAANTCAAAGACAAGAATATANTGATATCTTTAATCAANTAAATGATTCAAAAAAA
GATAATTTANNATTAATTCAGGAATTAAATCAATTAAAAGGTNNAAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAACAGTAATAATACAAATAATAATAATAATAATAGTACGAATAATACAAATAGCAAT
ATAAAATCAAATTCATCACCAATTGTAAAATCAAATAATAATAATAGTAATAATAGTAGT
AATAGTAGCAGTAGTATTAATCATAATAGCTTTATAATAACACAAGAATCATTAAGTAAT
GGCGCTCAATCACCACATAATTTACAACCACA