CHL558
Library CH
(Link to library)
Clone ID CHL558
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16248-1
Original site URL
Representative seq. ID CHL558P
(Link to Original site)
Representative DNA sequence
>CHL558 (CHL558Q) /CSM/CH/CHL5-C/CHL558Q.Seq.d/
AAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAA
AGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATGGA
AACTGTCAAGAATTTAGAAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCTGA
TGCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAG
TTGTACCATTGATGAAATCGGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGT
CAACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGA
TGCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAATGT
TTATGTTGCCGACGCTTCANGTAXXXXXXXXXXAAACCAACAAAGGTAAATAAATAATAA
ATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAAAGATTTCACTGTTGATGAA
AATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATGGAAACTGTCAAGAATTTAGAA
GCCAAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTA
AATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATC
GGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATT
TTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATAC
TTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAATGTTTATGTTGCCGACGCTTCA
GGTACCAGAGTTGGCGGTTTCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAAC
AAGATTGTTGATTCTGATGAATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCATGT
GAAAGTGTTCGTGCTCGTTGGGCTTACAAAGTTCCAGGTTCAATNATTCAAAATCTTTTG
GGTATGAAACATGGTGCTCCAAACAAACATCACATTATCCTCATNAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence
kvnk**IKMLTFKQLKETEKDFTVDENKFRVAPSNETLMETVKNLEAKNHRVSVVENEAD
ALNLLLNEIPKGSEVMCASSCTIDEIGFKKIYFSDDSPFVNVHKKILALPADKQADARKD
ALTSQYFLSSVTAISKTGNVYVADASX---

---KPTKVNK**ikmltfkqlketekdftvdenkfrvapsnetlmetvknleaknhrvsv
veneadalnlllneipkgsevmcassctideigfkkiyfsddspfvnvhkkilalpadkq
adarkdaltsqyflssvtaisktgnvyvadasgtrvggftaaknliivsgynkivdsdel
avqrteqfclpcesvrarwaykvpgsxiqnllgmkhgapnkhhiilxk


Translated Amino Acid sequence (All Frames)
Frame A:
kgk*iin*dvniqtikrnrkrfhc**k*iqsctkq*nlngncqefrsqepqsfsr*k*s*
cfkfiik*npkrf*shvr*qlyh**nrfqenlfq**fsirqrs*kdfsfts**ts*cs*r
cfnltilfiicncnlqnwkclccrrfx---

---KPTKVNK**ikmltfkqlketekdftvdenkfrvapsnetlmetvknleaknhrvsv
veneadalnlllneipkgsevmcassctideigfkkiyfsddspfvnvhkkilalpadkq
adarkdaltsqyflssvtaisktgnvyvadasgtrvggftaaknliivsgynkivdsdel
avqrteqfclpcesvrarwaykvpgsxiqnllgmkhgapnkhhiilxk

Frame B:
kvnk**IKMLTFKQLKETEKDFTVDENKFRVAPSNETLMETVKNLEAKNHRVSVVENEAD
ALNLLLNEIPKGSEVMCASSCTIDEIGFKKIYFSDDSPFVNVHKKILALPADKQADARKD
ALTSQYFLSSVTAISKTGNVYVADASX---

---nqqr*innklrc*hsnn*kkpkkisllmkinselhqamkp*wklsri*kprttefqs
lkmklml*iyy*mksqkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqlink
lmlvkml*phntfyhl*lqspklemfmlptlqvpelavslllki*ssflvitrllilmn*
pskelnnsvyhvkvfvlvgltkfqvqxfkifwv*nmvlqtnitlssxk

Frame C:
r*innklrc*hsnn*kkpkkisllmkinselhqamkp*wklsri*kprttefqslkmklm
l*iyy*mksqkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqlinklmlvkm
l*phntfyhl*lqspklemfmlptlxv---

---tnkgk*iin*dvniqtikrnrkrfhc**k*iqsctkq*nlngncqefrsqepqsfsr
*k*s*cfkfiik*npkrf*shvr*qlyh**nrfqenlfq**fsirqrs*kdfsfts**ts
*cs*rcfnltilfiicncnlqnwkclccrrfryqswrfhcc*kfnhrfwl*qdc*f**is
rpkn*tilftm*kcscslglqssrfnxsksfgyetwcskqtshyphxk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHL558 (CHL558Q) /CSM/CH/CHL5-C/CHL558Q.Seq.d/ 2163 0.0
SHF652 (SHF652Q) /CSM/SH/SHF6-C/SHF652Q.Seq.d/ 1330 0.0
CHL388 (CHL388Q) /CSM/CH/CHL3-D/CHL388Q.Seq.d/ 1330 0.0
CHG794 (CHG794Q) /CSM/CH/CHG7-D/CHG794Q.Seq.d/ 1320 0.0
VFE226 (VFE226Q) /CSM/VF/VFE2-B/VFE226Q.Seq.d/ 1316 0.0
CHM787 (CHM787Q) /CSM/CH/CHM7-D/CHM787Q.Seq.d/ 1316 0.0
CFK289 (CFK289Q) /CSM/CF/CFK2-D/CFK289Q.Seq.d/ 1316 0.0
SHK631 (SHK631Q) /CSM/SH/SHK6-B/SHK631Q.Seq.d/ 1310 0.0
CHL741 (CHL741Q) /CSM/CH/CHL7-B/CHL741Q.Seq.d/ 1308 0.0
CHK665 (CHK665Q) /CSM/CH/CHK6-C/CHK665Q.Seq.d/ 1300 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ310674|AJ310674.1 Dictyostelium discoideum 3B gene for prespore-specific protein 3B,. 698 0.0 2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 698 0.0 20
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 40 2e-07 18
AE017263|AE017263.1 Mesoplasma florum L1 complete genome. 32 3e-07 26
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome. 36 9e-07 29
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 38 4e-06 11
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 38 7e-06 10
BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome. 38 2e-05 25
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 36 2e-05 20
AY863212|AY863212.1 Rhizopus oryzae mitochondrion, complete genome. 36 2e-05 7
dna update 2005. 3.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115605_5(AC115605|pid:none) Dictyostelium discoideum chromosom... 190 7e-47
AC115605_4(AC115605|pid:none) Dictyostelium discoideum chromosom... 189 1e-46
AY596296_161(AY596296|pid:none) Haloarcula marismortui ATCC 4304... 111 5e-23
AE015927_490(AE015927|pid:none) Clostridium tetani E88, complete... 68 6e-10
AM412317_887(AM412317|pid:none) Clostridium botulinum A str. ATC... 65 4e-09
CP001393_1815(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 64 1e-08
CP001393_2285(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 59 4e-07
BA000016_2602(BA000016|pid:none) Clostridium perfringens str. 13... 58 5e-07
CP000885_3236(CP000885|pid:none) Clostridium phytofermentans ISD... 56 2e-06
CP000246_2818(CP000246|pid:none) Clostridium perfringens ATCC 13... 55 3e-06
protein update 2009. 4. 8
PSORT

psg: 0.48 gvh: 0.23 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for CHL558 is cyt

5' end seq. ID CHL558F
5' end seq.
>CHL558F.Seq
AAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAA
AGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATGGA
AACTGTCAAGAATTTAGAAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCTGA
TGCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAG
TTGTACCATTGATGAAATCGGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGT
CAACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGA
TGCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAATGT
TTATGTTGCCGACGCTTCANGTANNNNNNNNNN
Length of 5' end seq. 453
3' end seq. ID CHL558Z
3' end seq.
>CHL558Z.Seq
NNNNNNNNNNAAACCAACAAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACA
ATTAAAAGAAACCGAAAAAGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAG
CAATGAAACCTTAATGGAAACTGTCAAGAATTTAGAAGCCAAGAACCACAGAGTTTCAGT
CGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTCTGA
AGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATCGGTTTCAAGAAAATTTATTTCAG
TGATGATTCTCCATTCGTCAACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACA
AGCTGATGCTCGTAAAGATGCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAAT
CTCCAAAACTGGAAATGTTTATGTTGCCGACGCTTCAGGTACCAGAGTTGGCGGTTTCAC
TGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAACAAGATTGTTGATTCTGATGAATT
AGCCGTCCAAAGAACTGAACAATTCTGTTTACCATGTGAAAGTGTTCGTGCTCGTTGGGC
TTACAAAGTTCCAGGTTCAATNATTCAAAATCTTTTGGGTATGAAACATGGTGCTCCAAA
CAAACATCACATTATCCTCATNAAAAA
Length of 3' end seq. 687
Connected seq. ID CHL558P
Connected seq.
>CHL558P.Seq
AAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAA
AGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATGGA
AACTGTCAAGAATTTAGAAGCCAAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCTGA
TGCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAG
TTGTACCATTGATGAAATCGGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGT
CAACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGA
TGCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAATGT
TTATGTTGCCGACGCTTCANGTA----------AAACCAACAAAGGTAAATAAATAATAA
ATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAAAGATTTCACTGTTGATGAA
AATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATGGAAACTGTCAAGAATTTAGAA
GCCAAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTA
AATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATC
GGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATT
TTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATAC
TTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAATGTTTATGTTGCCGACGCTTCA
GGTACCAGAGTTGGCGGTTTCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAAC
AAGATTGTTGATTCTGATGAATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCATGT
GAAAGTGTTCGTGCTCGTTGGGCTTACAAAGTTCCAGGTTCAATNATTCAAAATCTTTTG
GGTATGAAACATGGTGCTCCAAACAAACATCACATTATCCTCATNAAAAA
Length of connected seq. 1120
Full length Seq ID -
Full length Seq. -
Length of full length seq. -