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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHL532
Library CH
(Link to library)
Clone ID CHL532
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15680-1
Original site URL
Representative seq. ID CHL532P
(Link to Original site)
Representative DNA sequence 
>CHL532 (CHL532Q) /CSM/CH/CHL5-B/CHL532Q.Seq.d/
ATTTTTTATTTAATTTTTTTAATTAATCATAGTCAACAAAATGTGTAAATATAATGATCA
TAAATATTTAGTAGAAAAGGTAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAA
ATATGATTTACATTTAAAACCAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCAT
CACAGTTCAAGTAAAACAACCAACAAAAACCATAACTATACATTCAATTGAAATTGAAAT
TCAATCAGCTTCAATAAAATCATCATCATCATCTCAATCATCAAAATCAATTACATTTTA
TGAACCAGAAGAAGTTGTCATCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTG
TTTATCATTGGTATTTACTGGTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAA
GTATACTGTTAAAGGTGAAGATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGC
TCGTCGTTCTTTTCCATGTTTTGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTT
AACTGTCTCTGAATGTCATACCGCTATTTCAAATATGGAAGAAAAATCAATTACTCCAXX
XXXXXXXXGTAAATTGTTGAAACCATTATCACAACGTTTAGGCTTTGAAGTTAAATCAGG
TGAATCATCCTCTGACACTTTGTTAAGAAATAAAGTAAACTCTTATTTGGGTATTTTGGG
TGACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGAGCAATTCAAAGTCGACCAATC
TTCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCACTGTTGTAAAGAATGGTTCCGA
AGCTGAACAACAAGAAATTATCAATAGATACCTCGCTTCCAATGATATTGCAGAGAAATC
AAGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGCATTGGTATTGAAGGCTTTGGA
ATTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTATATGCTTTGGAGAGTCGGAAA
TGAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAACTTTAAATCAATCAATGAAAC
CTTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTTTGCTTTGTCCTCAAAAATGAC
TGATCAACAATTACAACAAGTTGAAGATTTCTTCAAACAAAATCCAGTTGCAATTGCTGA
TCGTTCAATTAAACAAGATTTAGAACAAATTAGAAATAATACAAAATGGTTTAATTCATT
TAATAAAGATTTATTAAATTGGATTAAAAAATAAATAATCTAATTTAATAAAGATTTATA
AATTTGGATTTTTATAAAAAATAAAATTTATTTAATTTTTATTATTTTTTTATTAAGTTT
TATAAATAATAAAATAAATTTCAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
ffi*ff*LIIVNKMCKYNDHKYLVEKVDRLVLPENVVPIKYDLHLKPNLKEFTFKGEETI
TVQVKQPTKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELSVGEYC
LSLVFTGLLNDKLKGFYRSKYTVKGEDRYLATTQFEATDARRSFPCFDEPAHKAVFNITL
TVSECHTAISNMEEKSITP---

---KLLKPLSQRLGFEVKSGESSSDTLLRNKVNSYLGILGDKEIVAEARKRFEQFKVDQS
SLPSDIRSSVLVTVVKNGSEAEQQEIINRYLASNDIAEKSSLLSVVCKSPSSALVLKALE
FSVSKDVRTCESYMLWRVGNEFKPVVWKYFTENFKSINETFNQNVLFAYMISFALSSKMT
DQQLQQVEDFFKQNPVAIADRSIKQDLEQIRNNTKWFNSFNKDLLNWIKK*ii*fnkdl*
iwifiknkiylifiifllsfinnkinfk
Translated Amino Acid sequence (All Frames) 
Frame A:
ifyliflinhsqqnv*i**s*ifsrkgr*igitrkcctn*i*ftfktkfkriyf*r*rdh
hssskttnknhnytfn*n*nsisfnkiiiiisiikinyil*trrschl*i*k*iisw*il
fiigiywfik*qikrflsfkvyc*r*rslfsnnsirshrcssffsmf**tss*ssfqyhf
ncl*msyryfkygrkinys---

---vnc*nhyhnv*alklnqvnhpltlc*eik*tliwvfwvtkrlwprlerdlsnskstn
llylpisvqvf*sll*rmvpklnnkklsidtslpmilqrnqvycqlfanhhpvhwy*rlw
nslsqkmlelvnpicfgesemnlnq*fgnislktlnqsmkplikmfysli*slllcpqk*
linnynklkissnkiqlqllivqlnki*nkleiiqnglihlikiy*iglknk*snlikiy
kfgfl*kikfi*fllffy*vl*iik*is

Frame B:
ffi*ff*LIIVNKMCKYNDHKYLVEKVDRLVLPENVVPIKYDLHLKPNLKEFTFKGEETI
TVQVKQPTKTITIHSIEIEIQSASIKSSSSSQSSKSITFYEPEEVVIFEFENELSVGEYC
LSLVFTGLLNDKLKGFYRSKYTVKGEDRYLATTQFEATDARRSFPCFDEPAHKAVFNITL
TVSECHTAISNMEEKSITP---

---*ivetiittfrl*s*ir*iil*hfvkk*skllfgyfg*qrdcgrg*kei*aiqsrpi
fftfrypfkcfshcckewfrs*ttrnyq*iprfq*ycreikfivsclqitiqcigiegfg
ilclkrc*nl*ilyalesrk*i*tssleifh*kl*inq*nl*skcfirlydlfcfvlknd
*stitts*rflqtksscnc*sfn*trfrtn*k*ykmv*fi**rfikld*kinnli**rfi
nldfykk*nlfnfyyffikfyk**nkfq

Frame C:
flfnffn*s*stkcvnimiini**kr*idwyyqkmlyqlnmiyi*nqi*knlllkvkrps
qfk*nnqqkp*lyiqlklkfnqlq*nhhhhlnhqnqlhfmnqkklsslnlkmnyqlvniv
yhwyllvy*mtn*kvsivqsillkvkivi*qqlnskppmlvvlfhvlmnqlikqfsisl*
lslnviplfqiwkknqll---

---KLLKPLSQRLGFEVKSGESSSDTLLRNKVNSYLGILGDKEIVAEARKRFEQFKVDQS
SLPSDIRSSVLVTVVKNGSEAEQQEIINRYLASNDIAEKSSLLSVVCKSPSSALVLKALE
FSVSKDVRTCESYMLWRVGNEFKPVVWKYFTENFKSINETFNQNVLFAYMISFALSSKMT
DQQLQQVEDFFKQNPVAIADRSIKQDLEQIRNNTKWFNSFNKDLLNWIKK*ii*fnkdl*
iwifiknkiylifiifllsfinnkinfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL532 (CHL532Q) /CSM/CH/CHL5-B/CHL532Q.Seq.d/                       1812   0.0
VHO863 (VHO863Q) /CSM/VH/VHO8-C/VHO863Q.Seq.d/                       1243   0.0
VHO805 (VHO805Q) /CSM/VH/VHO8-A/VHO805Q.Seq.d/                       1243   0.0
VHN658 (VHN658Q) /CSM/VH/VHN6-C/VHN658Q.Seq.d/                       1243   0.0
VHN267 (VHN267Q) /CSM/VH/VHN2-C/VHN267Q.Seq.d/                       1243   0.0
VHJ865 (VHJ865Q) /CSM/VH/VHJ8-C/VHJ865Q.Seq.d/                       1243   0.0
VHJ465 (VHJ465Q) /CSM/VH/VHJ4-C/VHJ465Q.Seq.d/                       1243   0.0
VHJ255 (VHJ255Q) /CSM/VH/VHJ2-C/VHJ255Q.Seq.d/                       1243   0.0
VHB570 (VHB570Q) /CSM/VH/VHB5-C/VHB570Q.Seq.d/                       1243   0.0
SHD772 (SHD772Q) /CSM/SH/SHD7-C/SHD772Q.Seq.d/                       1243   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY631393|AY631393.1 Dictyostelium discoideum puromycin-sensitive aminopeptidase-like protein (psa) mRNA, partial cds.  1033   0.0    2
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    42   1e-08  12
CP000025|CP000025.1 Campylobacter jejuni RM1221, complete genome.    34   7e-07  36
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    36   2e-05  18
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   7e-05  29
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-04  23
B12580|B12580.1 F22I17-T7 IGF Arabidopsis thaliana genomic clone F22I17, DNA sequence.    44   2e-04  2
CW182327|CW182327.1 104_597_11164013_116_36659_019 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11164013, genomic survey sequence.    44   6e-04  2
CW145228|CW145228.1 104_537_11138357_148_34968_019 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11138357, genomic survey sequence.    44   6e-04  2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    32   8e-04  17
dna update 2005. 3.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY631393_1(AY631393|pid:none) Dictyostelium discoideum puromycin...   416   e-114
AE014296_282(AE014296|pid:none) Drosophila melanogaster chromoso...   136   2e-30
AF350242_1(AF350242|pid:none) Pichia angusta aminopeptidase gene...   136   2e-30
AE014296_281(AE014296|pid:none) Drosophila melanogaster chromoso...   136   2e-30
AF327435_1(AF327435|pid:none) Drosophila melanogaster puromycin-...   135   3e-30
(P55786) RecName: Full=Puromycin-sensitive aminopeptidase;      ...   128   4e-28
FM992688_411(FM992688|pid:none) Candida dubliniensis CD36 chromo...   127   1e-27
BC098978_1(BC098978|pid:none) Xenopus laevis hypothetical protei...   127   1e-27
A65888_1(A65888|pid:none) Sequence 1 from Patent WO9738114.  &Y0...   126   2e-27
AJ851657_1(AJ851657|pid:none) Gallus gallus mRNA for hypothetica...   126   2e-27
protein update 2009. 4. 8
PSORT 

 psg: 0.53  gvh: 0.26  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHL532 is cyt
5' end seq. ID CHL532F
5' end seq. 
>CHL532F.Seq
ATTTTTTATTTAATTTTTTTAATTAATCATAGTCAACAAAATGTGTAAATATAATGATCA
TAAATATTTAGTAGAAAAGGTAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAA
ATATGATTTACATTTAAAACCAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCAT
CACAGTTCAAGTAAAACAACCAACAAAAACCATAACTATACATTCAATTGAAATTGAAAT
TCAATCAGCTTCAATAAAATCATCATCATCATCTCAATCATCAAAATCAATTACATTTTA
TGAACCAGAAGAAGTTGTCATCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTG
TTTATCATTGGTATTTACTGGTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAA
GTATACTGTTAAAGGTGAAGATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGC
TCGTCGTTCTTTTCCATGTTTTGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTT
AACTGTCTCTGAATGTCATACCGCTATTTCAAATATGGAAGAAAAATCAATTACTCCANN
NNNNNNNN
Length of 5' end seq. 608
3' end seq. ID CHL532Z
3' end seq. 
>CHL532Z.Seq
NNNNNNNNNNGTAAATTGTTGAAACCATTATCACAACGTTTAGGCTTTGAAGTTAAATCA
GGTGAATCATCCTCTGACACTTTGTTAAGAAATAAAGTAAACTCTTATTTGGGTATTTTG
GGTGACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGAGCAATTCAAAGTCGACCAA
TCTTCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCACTGTTGTAAAGAATGGTTCC
GAAGCTGAACAACAAGAAATTATCAATAGATACCTCGCTTCCAATGATATTGCAGAGAAA
TCAAGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGCATTGGTATTGAAGGCTTTG
GAATTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTATATGCTTTGGAGAGTCGGA
AATGAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAACTTTAAATCAATCAATGAA
ACCTTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTTTGCTTTGTCCTCAAAAATG
ACTGATCAACAATTACAACAAGTTGAAGATTTCTTCAAACAAAATCCAGTTGCAATTGCT
GATCGTTCAATTAAACAAGATTTAGAACAAATTAGAAATAATACAAAATGGTTTAATTCA
TTTAATAAAGATTTATTAAATTGGATTAAAAAATAAATAATCTAATTTAATAAAGATTTA
TAAATTTGGATTTTTATAAAAAATAAAATTTATTTAATTTTTATTATTTTTTTATTAAGT
TTTATAAATAATAAAATAAATTTCAAA
Length of 3' end seq. 807
Connected seq. ID CHL532P
Connected seq. 
>CHL532P.Seq
ATTTTTTATTTAATTTTTTTAATTAATCATAGTCAACAAAATGTGTAAATATAATGATCA
TAAATATTTAGTAGAAAAGGTAGATAGATTGGTATTACCAGAAAATGTTGTACCAATTAA
ATATGATTTACATTTAAAACCAAATTTAAAAGAATTTACTTTTAAAGGTGAAGAGACCAT
CACAGTTCAAGTAAAACAACCAACAAAAACCATAACTATACATTCAATTGAAATTGAAAT
TCAATCAGCTTCAATAAAATCATCATCATCATCTCAATCATCAAAATCAATTACATTTTA
TGAACCAGAAGAAGTTGTCATCTTTGAATTTGAAAATGAATTATCAGTTGGTGAATATTG
TTTATCATTGGTATTTACTGGTTTATTAAATGACAAATTAAAAGGTTTCTATCGTTCAAA
GTATACTGTTAAAGGTGAAGATCGTTATTTAGCAACAACTCAATTCGAAGCCACCGATGC
TCGTCGTTCTTTTCCATGTTTTGATGAACCAGCTCATAAAGCAGTTTTCAATATCACTTT
AACTGTCTCTGAATGTCATACCGCTATTTCAAATATGGAAGAAAAATCAATTACTCCA--
--------GTAAATTGTTGAAACCATTATCACAACGTTTAGGCTTTGAAGTTAAATCAGG
TGAATCATCCTCTGACACTTTGTTAAGAAATAAAGTAAACTCTTATTTGGGTATTTTGGG
TGACAAAGAGATTGTGGCCGAGGCTAGAAAGAGATTTGAGCAATTCAAAGTCGACCAATC
TTCTTTACCTTCCGATATCCGTTCAAGTGTTTTAGTCACTGTTGTAAAGAATGGTTCCGA
AGCTGAACAACAAGAAATTATCAATAGATACCTCGCTTCCAATGATATTGCAGAGAAATC
AAGTTTATTGTCAGTTGTTTGCAAATCACCATCCAGTGCATTGGTATTGAAGGCTTTGGA
ATTCTCTGTCTCAAAAGATGTTAGAACTTGTGAATCCTATATGCTTTGGAGAGTCGGAAA
TGAATTTAAACCAGTAGTTTGGAAATATTTCACTGAAAACTTTAAATCAATCAATGAAAC
CTTTAATCAAAATGTTTTATTCGCTTATATGATCTCTTTTGCTTTGTCCTCAAAAATGAC
TGATCAACAATTACAACAAGTTGAAGATTTCTTCAAACAAAATCCAGTTGCAATTGCTGA
TCGTTCAATTAAACAAGATTTAGAACAAATTAGAAATAATACAAAATGGTTTAATTCATT
TAATAAAGATTTATTAAATTGGATTAAAAAATAAATAATCTAATTTAATAAAGATTTATA
AATTTGGATTTTTATAAAAAATAAAATTTATTTAATTTTTATTATTTTTTTATTAAGTTT
TATAAATAATAAAATAAATTTCAAA
Length of connected seq. 1395
Full length Seq ID -
Full length Seq. -
Length of full length seq. -