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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHL388
Library CH
(Link to library)
Clone ID CHL388
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16248-1
Original site URL
Representative seq. ID CHL388P
(Link to Original site)
Representative DNA sequence 
>CHL388 (CHL388Q) /CSM/CH/CHL3-D/CHL388Q.Seq.d/
AGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAAAG
ATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATGGAAA
CTGTCAAGAATTTAGAAGCCAAGAACCACAGAGCTTTCAGTCGTTGAAAATGAAGCTGAT
GCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGT
TGTACCATTGATGAAATCGGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGTC
AACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGAT
GCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAATGTT
TATGTTGCCGACGCTTCANGXXXXXXXXXXAAACCAACAAAGGTAAATAAATAATAAATT
AAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAAAGATTTCACTGTTGATGAAAAT
AAATTCAGAGTTGCACCAAGCAATGAAACCTTAATGGAAACTGTCAAGAATTTAGAAGCC
AAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTAAAT
GAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATCGGT
TTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATTTTA
GCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATACTTT
TTATCATCTGTAACTGCAATCTCCAAAACTGGAAATGTTTATGTTGCCGACGCTTCAGGT
ACCAGAGTTGGCGGTTTCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAACAAG
ATTGTTGATTCTGATGAATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCATGTGAA
AGTGTTCGTGCTCGTTGGGCTTACAAAGTTCCAGGTTCAATNATTCAAAATCTTTTGGGT
ATGAAACATGGTGCTCCAAACAAACATCACATTATCCTCATNAAAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
r*innklrc*hsnn*kkpkkisllmkinselhqamkp*wklsri*KPRTTELSVVENEAD
ALNLLLNEIPKGSEVMCASSCTIDEIGFKKIYFSDDSPFVNVHKKILALPADKQADARKD
ALTSQYFLSSVTAISKTGNVYVADAS---

---KPTKVNK**ikmltfkqlketekdftvdenkfrvapsnetlmetvknleaknhrvsv
veneadalnlllneipkgsevmcassctideigfkkiyfsddspfvnvhkkilalpadkq
adarkdaltsqyflssvtaisktgnvyvadasgtrvggftaaknliivsgynkivdsdel
avqrteqfclpcesvrarwaykvpgsxiqnllgmkhgapnkhhiilxk
Translated Amino Acid sequence (All Frames) 
Frame A:
r*innklrc*hsnn*kkpkkisllmkinselhqamkp*wklsri*KPRTTELSVVENEAD
ALNLLLNEIPKGSEVMCASSCTIDEIGFKKIYFSDDSPFVNVHKKILALPADKQADARKD
ALTSQYFLSSVTAISKTGNVYVADAS---

---KPTKVNK**ikmltfkqlketekdftvdenkfrvapsnetlmetvknleaknhrvsv
veneadalnlllneipkgsevmcassctideigfkkiyfsddspfvnvhkkilalpadkq
adarkdaltsqyflssvtaisktgnvyvadasgtrvggftaaknliivsgynkivdsdel
avqrteqfclpcesvrarwaykvpgsxiqnllgmkhgapnkhhiilxk

Frame B:
gk*iin*dvniqtikrnrkrfhc**k*iqsctkq*nlngncqefrsqepqsfqslkmklm
l*iyy*mksqkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqlinklmlvkm
l*phntfyhl*lqspklemfmlptlx---

---nqqr*innklrc*hsnn*kkpkkisllmkinselhqamkp*wklsri*kprttefqs
lkmklml*iyy*mksqkvlkscalavvplmksvsrkfisvmilhsstfikrf*lyqlink
lmlvkml*phntfyhl*lqspklemfmlptlqvpelavslllki*ssflvitrllilmn*
pskelnnsvyhvkvfvlvgltkfqvqxfkifwv*nmvlqtnitlssxk

Frame C:
vnk**ikmltfkqlketekdftvdenkfrvapsnetlmetvknleaknhrafsr*k*s*c
fkfiik*npkrf*shvr*qlyh**nrfqenlfq**fsirqrs*kdfsfts**ts*cs*rc
fnltilfiicncnlqnwkclccrrfx---

---tnkgk*iin*dvniqtikrnrkrfhc**k*iqsctkq*nlngncqefrsqepqsfsr
*k*s*cfkfiik*npkrf*shvr*qlyh**nrfqenlfq**fsirqrs*kdfsfts**ts
*cs*rcfnltilfiicncnlqnwkclccrrfryqswrfhcc*kfnhrfwl*qdc*f**is
rpkn*tilftm*kcscslglqssrfnxsksfgyetwcskqtshyphxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHL388 (CHL388Q) /CSM/CH/CHL3-D/CHL388Q.Seq.d/                       2157   0.0
SHF652 (SHF652Q) /CSM/SH/SHF6-C/SHF652Q.Seq.d/                       1330   0.0
CHL558 (CHL558Q) /CSM/CH/CHL5-C/CHL558Q.Seq.d/                       1330   0.0
CHG794 (CHG794Q) /CSM/CH/CHG7-D/CHG794Q.Seq.d/                       1320   0.0
VFE226 (VFE226Q) /CSM/VF/VFE2-B/VFE226Q.Seq.d/                       1316   0.0
CHM787 (CHM787Q) /CSM/CH/CHM7-D/CHM787Q.Seq.d/                       1316   0.0
CFK289 (CFK289Q) /CSM/CF/CFK2-D/CFK289Q.Seq.d/                       1316   0.0
SHK631 (SHK631Q) /CSM/SH/SHK6-B/SHK631Q.Seq.d/                       1310   0.0
CHL741 (CHL741Q) /CSM/CH/CHL7-B/CHL741Q.Seq.d/                       1308   0.0
CHK665 (CHK665Q) /CSM/CH/CHK6-C/CHK665Q.Seq.d/                       1300   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ310674|AJ310674.1 Dictyostelium discoideum 3B gene for prespore-specific protein 3B,.   698   0.0    3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   698   0.0    20
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   2e-07  18
AE017263|AE017263.1 Mesoplasma florum L1 complete genome.          32   3e-07  26
BA000026|BA000026.2 Mycoplasma penetrans HF-2 DNA, complete genome.    36   3e-07  30
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38   4e-06  11
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    38   7e-06  10
AC150703|AC150703.15 Medicago truncatula clone mth2-130k11, WORKING DRAFT SEQUENCE, 23 unordered pieces.    40   1e-05  9
BA000021|BA000021.3 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome.    38   1e-05  25
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    36   2e-05  20
dna update 2005. 3. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115605_5(AC115605|pid:none) Dictyostelium discoideum chromosom...   190   6e-47
AC115605_4(AC115605|pid:none) Dictyostelium discoideum chromosom...   189   1e-46
AY596296_161(AY596296|pid:none) Haloarcula marismortui ATCC 4304...   111   5e-23
AE015927_490(AE015927|pid:none) Clostridium tetani E88, complete...    68   6e-10
AM412317_887(AM412317|pid:none) Clostridium botulinum A str. ATC...    65   4e-09
CP001393_1815(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    64   1e-08
CP001393_2285(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    59   4e-07
BA000016_2602(BA000016|pid:none) Clostridium perfringens str. 13...    58   5e-07
CP000885_3236(CP000885|pid:none) Clostridium phytofermentans ISD...    56   2e-06
CP000246_2818(CP000246|pid:none) Clostridium perfringens ATCC 13...    55   3e-06
protein update 2009. 4. 8
PSORT 

 psg: 0.57  gvh: 0.33  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial

>> prediction for CHL388 is cyt
5' end seq. ID CHL388F
5' end seq. 
>CHL388F.Seq
AGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAAAG
ATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATGGAAA
CTGTCAAGAATTTAGAAGCCAAGAACCACAGAGCTTTCAGTCGTTGAAAATGAAGCTGAT
GCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGT
TGTACCATTGATGAAATCGGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGTC
AACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGAT
GCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAATGTT
TATGTTGCCGACGCTTCANGNNNNNNNNNN
Length of 5' end seq. 450
3' end seq. ID CHL388Z
3' end seq. 
>CHL388Z.Seq
NNNNNNNNNNAAACCAACAAAGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACA
ATTAAAAGAAACCGAAAAAGATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAG
CAATGAAACCTTAATGGAAACTGTCAAGAATTTAGAAGCCAAGAACCACAGAGTTTCAGT
CGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTCTGA
AGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATCGGTTTCAAGAAAATTTATTTCAG
TGATGATTCTCCATTCGTCAACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACA
AGCTGATGCTCGTAAAGATGCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAAT
CTCCAAAACTGGAAATGTTTATGTTGCCGACGCTTCAGGTACCAGAGTTGGCGGTTTCAC
TGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAACAAGATTGTTGATTCTGATGAATT
AGCCGTCCAAAGAACTGAACAATTCTGTTTACCATGTGAAAGTGTTCGTGCTCGTTGGGC
TTACAAAGTTCCAGGTTCAATNATTCAAAATCTTTTGGGTATGAAACATGGTGCTCCAAA
CAAACATCACATTATCCTCATNAAAAA
Length of 3' end seq. 687
Connected seq. ID CHL388P
Connected seq. 
>CHL388P.Seq
AGGTAAATAAATAATAAATTAAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAAAG
ATTTCACTGTTGATGAAAATAAATTCAGAGTTGCACCAAGCAATGAAACCTTAATGGAAA
CTGTCAAGAATTTAGAAGCCAAGAACCACAGAGCTTTCAGTCGTTGAAAATGAAGCTGAT
GCTTTAAATTTATTATTAAATGAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGT
TGTACCATTGATGAAATCGGTTTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGTC
AACGTTCATAAAAAGATTTTAGCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGAT
GCTTTAACCTCACAATACTTTTTATCATCTGTAACTGCAATCTCCAAAACTGGAAATGTT
TATGTTGCCGACGCTTCANG----------AAACCAACAAAGGTAAATAAATAATAAATT
AAGATGTTAACATTCAAACAATTAAAAGAAACCGAAAAAGATTTCACTGTTGATGAAAAT
AAATTCAGAGTTGCACCAAGCAATGAAACCTTAATGGAAACTGTCAAGAATTTAGAAGCC
AAGAACCACAGAGTTTCAGTCGTTGAAAATGAAGCTGATGCTTTAAATTTATTATTAAAT
GAAATCCCAAAAGGTTCTGAAGTCATGTGCGCTAGCAGTTGTACCATTGATGAAATCGGT
TTCAAGAAAATTTATTTCAGTGATGATTCTCCATTCGTCAACGTTCATAAAAAGATTTTA
GCTTTACCAGCTGATAAACAAGCTGATGCTCGTAAAGATGCTTTAACCTCACAATACTTT
TTATCATCTGTAACTGCAATCTCCAAAACTGGAAATGTTTATGTTGCCGACGCTTCAGGT
ACCAGAGTTGGCGGTTTCACTGCTGCTAAAAATTTAATCATCGTTTCTGGTTATAACAAG
ATTGTTGATTCTGATGAATTAGCCGTCCAAAGAACTGAACAATTCTGTTTACCATGTGAA
AGTGTTCGTGCTCGTTGGGCTTACAAAGTTCCAGGTTCAATNATTCAAAATCTTTTGGGT
ATGAAACATGGTGCTCCAAACAAACATCACATTATCCTCATNAAAAA
Length of connected seq. 1117
Full length Seq ID -
Full length Seq. -
Length of full length seq. -